Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31264 Brassica carinata HOM05D007520 ORTHO05D009417 4.9e-120 434.5 221 100.0
C07p32740 Brassica napus HOM05D007520 ORTHO05D009417 9.3e-103 377.1 205 93.7
A06p43940 Brassica napus HOM05D007520 ORTHO05D009417 5.1e-101 371.3 205 92.7
BolC7t43791H Brassica oleracea HOM05D007520 ORTHO05D009417 4.3e-100 368.2 209 90.9
BraA06t27270Z Brassica rapa HOM05D007520 ORTHO05D009417 2.6e-97 359.0 209 89.5
Thhalv10005705m.g Eutrema salsugineum HOM05D007520 ORTHO05D009417 1.1e-95 353.6 208 87.0
Sp2g13330 Schrenkiella parvula HOM05D007520 ORTHO05D009417 1.4e-95 353.2 208 85.6
CARHR144480 Cardamine hirsuta HOM05D007520 ORTHO05D009417 7.4e-92 340.9 208 83.2
AL5G11020 Arabidopsis lyrata HOM05D007520 ORTHO05D009417 1.1e-90 337.0 208 84.6
AT2G01905 Arabidopsis thaliana HOM05D007520 ORTHO05D009417 2.6e-89 332.4 208 83.2
Aa31LG2G8010 Aethionema arabicum HOM05D007520 ORTHO05D009417 9.3e-87 323.9 236 73.7
THA.LOC104824117 Tarenaya hassleriana HOM05D007520 ORTHO05D009417 4.3e-76 288.5 218 68.3
Actinidia11793 Actinidia chinensis HOM05D007520 ORTHO05D009417 3.5e-65 252.3 200 65.0
COL.COLO4_27582 Corchorus olitorius HOM05D007520 ORTHO05D009417 5.9e-65 251.5 200 63.0
QL03p039135 Quercus lobata HOM05D007520 ORTHO05D009417 1.0e-64 250.8 196 65.3
Ciclev10016556m.g Citrus clementina HOM05D007520 ORTHO05D009417 6.5e-64 248.1 214 62.1
Duzib268G1867 Durio zibethinus HOM05D007520 ORTHO05D009417 4.2e-63 245.4 201 61.7
Gorai.008G169800 Gossypium raimondii HOM05D007520 ORTHO05D009417 9.4e-63 244.2 207 60.9
Hma1.2p1_0095F.1_g047520 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 1.2e-62 243.8 199 63.8
TAR374G0082 Trochodendron aralioides HOM05D000504 ORTHO05D000403 6.1e-62 241.5 201 62.2
ECA246G0416 Erigeron canadensis HOM05D007520 ORTHO05D009417 4.4e-60 235.3 197 62.4
Sed0012329 Sechium edule HOM05D007520 ORTHO05D009417 1.7e-59 233.4 205 59.0
Nn4g24547 Nelumbo nucifera HOM05D007520 ORTHO05D009417 2.2e-59 233.0 204 59.3
MELO3C020056.2 Cucumis melo HOM05D007520 ORTHO05D009417 1.4e-58 230.3 199 59.3
CsaV3_5G012990 Cucumis sativus L. HOM05D007520 ORTHO05D009417 1.4e-58 230.3 199 58.8
TWI53G0076 Tripterygium wilfordii HOM05D007520 ORTHO05D009417 1.8e-58 229.9 201 59.7
Aqoxy5G01264 Aquilegia oxysepala HOM05D007520 ORTHO05D009417 2.4e-58 229.6 202 58.9
Prupe.1G338000 Prunus persica HOM05D007520 ORTHO05D009417 3.1e-58 229.2 202 58.4
TPR.G35527 Trifolium pratense HOM05D007520 ORTHO05D009417 7.0e-58 228.0 198 61.6
CANSAT78G2519 Cannabis sativa HOM05D007520 ORTHO05D009417 1.6e-57 226.9 203 60.6
Manes.17G089333 Manihot esculenta HOM05D007520 ORTHO05D009417 1.6e-57 226.9 220 56.8
Lj2g0009613 Lotus japonicus HOM05D007520 ORTHO05D009417 5.9e-57 224.9 194 61.3
Psat6g100600 Pisum sativum HOM05D007520 ORTHO05D009417 1.3e-56 223.8 198 60.6
Medtr1g038820 Medicago truncatula HOM05D007520 ORTHO05D009417 1.7e-56 223.4 203 58.1
MD13G1015700 Malus domestica HOM05D007520 ORTHO05D009417 2.9e-56 222.6 202 59.4
arahy.Tifrunner.gnm1.ann1.RL07R4 Arachis hypogaea HOM05D007520 ORTHO05D009417 5.0e-56 221.9 211 58.3
HanXRQChr12g0379401 Helianthus annuus HOM05D007520 ORTHO05D009417 2.5e-55 219.5 189 58.7
PSO017G5472 Papaver somniferum HOM05D007520 ORTHO05D009417 7.2e-55 218.0 208 54.3
CiPaw.06G058600 Carya illinoinensis HOM05D007520 ORTHO05D009417 9.4e-55 217.6 201 60.2
Migut.L00619 Erythranthe guttata HOM05D007520 ORTHO05D009417 9.4e-55 217.6 201 56.7
PGR042G3173 Punica granatum HOM05D007520 ORTHO05D009417 2.7e-54 216.1 200 58.5
VMungo0251G1805 Vigna mungo HOM05D007520 ORTHO05D009417 2.7e-54 216.1 194 58.8
RcHm_v2.0_Chr4g0433681 Rosa chinensis HOM05D007520 ORTHO05D009417 1.4e-53 213.8 201 56.2
PSO478G1043 Papaver somniferum HOM05D007520 ORTHO05D009417 1.8e-53 213.4 226 51.3
FvH4_4g26110 Fragaria vesca HOM05D007520 ORTHO05D009417 4.0e-53 212.2 200 55.5
Sopen04g032100 Solanum pennellii HOM05D007520 ORTHO05D009417 1.7e-51 206.8 201 57.2
PGSC0003DMG400041336 Solanum tuberosum HOM05D001905 ORTHO05D001820 1.7e-51 206.8 201 57.7
Solyc04g078500.1 Solanum lycopersicum HOM05D007520 ORTHO05D009417 2.8e-51 206.1 201 57.2
Phvul.003G001900 Phaseolus vulgaris HOM05D007520 ORTHO05D009417 3.7e-51 205.7 207 53.6
SGA_v2.0_scaffold172G39028 Striga asiatica HOM05D007520 ORTHO05D009417 1.1e-50 204.1 198 54.0
Atru.chr11.1007 Acer truncatum HOM05D007520 ORTHO05D009417 9.1e-50 201.1 177 60.5
Nitab4.5_0004339g0060 Nicotiana tabacum HOM05D007520 ORTHO05D009417 5.9e-49 198.4 203 56.7
CAN.G1812.4 Capsicum annuum HOM05D007520 ORTHO05D009417 7.7e-49 198.0 201 55.2
Nitab4.5_0010118g0020 Nicotiana tabacum HOM05D007520 ORTHO05D009417 2.2e-48 196.4 203 56.2
Carub.0005s0089 Capsella rubella HOM05D007520 ORTHO05D009417 2.9e-48 196.1 132 78.8
Thecc.02G303900 Theobroma cacao HOM05D007520 ORTHO05D009417 2.9e-48 196.1 146 67.8
Zm00001eb010100 Zea mays HOM05D007520 ORTHO05D009417 1.9e-47 193.4 214 44.4
Sc15g0004470 Simmondsia chinensis HOM05D007520 ORTHO05D009417 4.7e-46 188.7 201 48.8
Lalb_Chr10g0094861 Lupinus albus HOM05D007520 ORTHO05D009417 6.8e-45 184.9 184 56.5
Lsat_1_v5_gn_5_170921 Lactuca sativa HOM05D007520 ORTHO05D009417 8.3e-43 177.9 200 50.5
FAN12G3032 Fragaria x ananassa HOM05D007520 ORTHO05D009417 1.3e-40 170.6 151 59.6
FAN12G3090 Fragaria x ananassa HOM05D007520 ORTHO05D009417 1.3e-40 170.6 151 59.6
FAN17G2852 Fragaria x ananassa HOM05D007520 ORTHO05D009417 5.0e-40 168.7 163 56.4
EL10Ac1g01972 Beta vulgaris HOM05D007520 ORTHO05D009417 6.6e-40 168.3 202 48.0
Atru.BG.295.p Acer truncatum HOM05D007520 ORTHO05D009417 1.4e-37 160.6 130 64.6
Rhsim09G0085600 Rhododendron simsii HOM05D007520 ORTHO05D009417 4.4e-36 155.6 173 51.4
Ah.11g041100 Amaranthus hybridus HOM05D007520 ORTHO05D009417 7.5e-36 154.8 202 44.6
Carub.0005s0090 Capsella rubella HOM05D007520 ORTHO05D009417 3.7e-35 152.5 89 85.4
Glyma.14G224300 Glycine max HOM05D007520 ORTHO05D009417 4.1e-34 149.1 128 59.4
FAN22G1570 Fragaria x ananassa HOM05D000296 ORTHO05D000175 7.8e-33 144.8 134 59.0
Gohir.D12G157000 Gossypium hirsutum HOM05D007520 ORTHO05D009417 3.0e-32 142.9 203 42.9
Dinv08902 Davidia involucrata HOM05D007520 ORTHO05D009417 6.6e-32 141.7 131 61.8
Gohir.A12G153900 Gossypium hirsutum HOM05D007520 ORTHO05D009417 6.6e-32 141.7 201 42.8
ClCG11G001000 Citrullus lanatus HOM05D007520 ORTHO05D009417 6.2e-30 135.2 122 55.7
DCAR_002655 Daucus carota HOM05D007520 ORTHO05D009417 2.3e-29 133.3 141 53.9
GSVIVG01011595001 Vitis vinifera HOM05D007520 ORTHO05D009417 6.8e-29 131.7 89 68.5
CSS0024703 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 8.9e-29 131.3 132 55.3
Hma1.2p1_0095F.1_g047530 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 1.3e-27 127.5 227 41.0
SalBow4G2630 Salvia bowleyana HOM05D007520 ORTHO05D009417 4.9e-27 125.6 125 52.0
GSVIVG01011596001 Vitis vinifera HOM05D007520 ORTHO05D009417 4.9e-27 125.6 107 61.7
CSS0003025 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 1.9e-26 123.6 132 53.0
CSS0021820 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 3.2e-26 122.9 101 59.4
CSS0032687 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 3.2e-26 122.9 101 59.4
SalBow3G0394 Salvia bowleyana HOM05D007520 ORTHO05D009417 3.2e-26 122.9 115 54.8
Cc11_g05730 Coffea canephora HOM05D007520 ORTHO05D009417 7.0e-26 121.7 106 59.4
AUR62036879 Chenopodium quinoa HOM05D007520 ORTHO05D009417 1.2e-25 120.9 141 46.1
MSTRG.8107 Avicennia marina HOM05D007520 ORTHO05D009417 6.6e-24 115.2 113 56.6
Lj3A859T72 Lonicera japonica HOM05D007520 ORTHO05D009417 3.3e-23 112.8 131 51.9
PGSC0003DMG400013121 Solanum tuberosum HOM05D007520 ORTHO05D009417 2.1e-22 110.2 111 54.1
HPP92_016407 Vanilla planifolia HOM05D007520 ORTHO05D009417 1.5e-20 104.0 89 51.7
HPP92_016406 Vanilla planifolia HOM05D007520 ORTHO05D009417 1.9e-18 97.1 116 51.7
SalBow6G7185 Salvia bowleyana HOM05D007520 ORTHO05D009417 4.1e-18 95.9 96 52.1
Haze_10814 Corylus avellana HOM05D007520 ORTHO05D009417 4.6e-17 92.4 75 62.7
Mapoly0059s0009 Marchantia polymorpha HOM05D007520 ORTHO05D009417 1.3e-16 90.9 201 30.3
CSS0008274 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 8.6e-16 88.2 63 69.8
SalBow2G3493 Salvia bowleyana HOM05D007520 ORTHO05D009417 1.9e-15 87.0 88 51.1
Pp3c10_19450 Physcomitrium patens HOM05D007520 ORTHO05D009417 1.4e-13 80.9 181 28.2
CDE06G1244 Ceratophyllum demersum HOM05D007520 ORTHO05D009417 2.3e-13 80.1 81 48.1
Dinv08901 Davidia involucrata HOM05D007520 ORTHO05D009417 8.9e-13 78.2 47 74.5
Eucgr.B02652 Eucalyptus grandis HOM05D007520 ORTHO05D009417 7.1e-10 68.6 53 64.2
AUR62032185 Chenopodium quinoa HOM05D007520 ORTHO05D009417 5.6e-07 58.9 67 40.3
AUR62026615 Chenopodium quinoa HOM05D007520 ORTHO05D009417 7.3e-07 58.5 77 32.5
AUR62033544 Chenopodium quinoa HOM05D000122 ORTHO05D009417 1.2e-06 57.8 78 37.2


User provided reference genes

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