Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31203 Brassica carinata HOM05D004479 ORTHO05D005597 1.8e-134 482.6 253 100.0
BraA06t27217Z Brassica rapa HOM05D004479 ORTHO05D005597 1.6e-98 363.2 255 78.0
BolC7t43874H Brassica oleracea HOM05D004479 ORTHO05D005597 8.7e-97 357.5 240 80.4
A06p43310 Brassica napus HOM05D004479 ORTHO05D005597 2.9e-92 342.4 271 70.5
BcaC06g34021 Brassica carinata HOM05D004479 ORTHO05D005597 1.2e-90 337.0 228 79.8
Sp2g14070 Schrenkiella parvula HOM05D004479 ORTHO05D005597 4.4e-80 302.0 231 70.6
C07p33640 Brassica napus HOM05D004479 ORTHO05D005597 8.2e-79 297.7 240 70.4
BcaB07g30687 Brassica carinata HOM05D004479 ORTHO05D005597 1.8e-78 296.6 231 68.0
BcaC04g21507 Brassica carinata HOM05D004479 ORTHO05D005597 2.4e-78 296.2 231 68.4
A09p24080 Brassica napus HOM05D004479 ORTHO05D005597 6.9e-78 294.7 231 68.4
C09p30960 Brassica napus HOM05D004479 ORTHO05D005597 6.9e-78 294.7 231 68.4
BolC9t55955H Brassica oleracea HOM05D004479 ORTHO05D005597 6.9e-78 294.7 231 68.4
BraA09t38008Z Brassica rapa HOM05D004479 ORTHO05D005597 6.9e-78 294.7 231 68.4
Carub.0005s0192 Capsella rubella HOM05D004479 ORTHO05D005597 7.7e-77 291.2 241 65.6
Aa31LG2G7330 Aethionema arabicum HOM05D004479 ORTHO05D005597 1.0e-76 290.8 234 66.2
AL5G12650 Arabidopsis lyrata HOM05D004479 ORTHO05D005597 2.2e-76 289.7 258 63.2
AT2G03070 Arabidopsis thaliana HOM05D004479 ORTHO05D005597 2.5e-75 286.2 254 62.6
CARHR213680 Cardamine hirsuta HOM05D004479 ORTHO05D005597 9.4e-75 284.3 231 66.7
Thhalv10004003m.g Eutrema salsugineum HOM05D004479 ORTHO05D005597 3.6e-74 282.3 231 65.8
THA.LOC104800314 Tarenaya hassleriana HOM05D004479 ORTHO05D005597 8.2e-71 271.2 214 66.8
arahy.Tifrunner.gnm1.ann1.SFLF9H Arachis hypogaea HOM05D004479 ORTHO05D005597 2.5e-67 259.6 230 62.6
Psat5g288040 Pisum sativum HOM05D004479 ORTHO05D005597 2.5e-67 259.6 213 63.8
Thecc.06G058800 Theobroma cacao HOM05D004479 ORTHO05D005597 4.2e-67 258.8 212 64.6
arahy.Tifrunner.gnm1.ann1.HYUF3S Arachis hypogaea HOM05D004479 ORTHO05D005597 9.4e-67 257.7 230 62.2
COL.COLO4_31168 Corchorus olitorius HOM05D004479 ORTHO05D005597 9.4e-67 257.7 212 64.2
Prupe.1G049400 Prunus persica HOM05D004479 ORTHO05D005597 1.2e-66 257.3 212 63.2
CANSAT78G0411 Cannabis sativa HOM05D004479 ORTHO05D005597 2.1e-66 256.5 223 61.9
Lj3g0018425 Lotus japonicus HOM05D004479 ORTHO05D005597 2.1e-66 256.5 215 61.9
PGR119G2289 Punica granatum HOM05D004479 ORTHO05D005597 2.1e-66 256.5 236 60.2
Medtr5g013930 Medicago truncatula HOM05D004479 ORTHO05D005597 2.7e-66 256.1 213 62.9
Ciclev10025265m.g Citrus clementina HOM05D004479 ORTHO05D005597 3.6e-66 255.8 212 64.2
Potri.010G253100 Populus trichocarpa HOM05D004479 ORTHO05D005597 3.6e-66 255.8 223 61.9
Duzib192G0061 Durio zibethinus HOM05D004479 ORTHO05D005597 8.0e-66 254.6 223 60.5
TWI09G1491 Tripterygium wilfordii HOM05D004479 ORTHO05D005597 8.0e-66 254.6 212 63.7
Ca_21726_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 1.4e-65 253.8 212 62.7
Sabra10G0196900 Salix brachista HOM05D004479 ORTHO05D005597 1.8e-65 253.4 223 61.0
Atru.chr1.2695 Acer truncatum HOM05D004479 ORTHO05D005597 4.0e-65 252.3 211 64.0
Phvul.005G185100 Phaseolus vulgaris HOM05D004479 ORTHO05D005597 5.2e-65 251.9 211 64.9
TPR.G5557 Trifolium pratense HOM05D004479 ORTHO05D005597 5.2e-65 251.9 212 62.3
Eucgr.J03177 Eucalyptus grandis HOM05D004479 ORTHO05D005597 8.8e-65 251.1 216 61.6
Gohir.A01G221776 Gossypium hirsutum HOM05D004479 ORTHO05D005597 8.8e-65 251.1 212 62.3
MD16G1227300 Malus domestica HOM05D004479 ORTHO05D005597 8.8e-65 251.1 212 61.8
Manes.06G177300 Manihot esculenta HOM05D004479 ORTHO05D005597 1.2e-64 250.8 241 58.5
ClCG07G014640 Citrullus lanatus HOM05D004479 ORTHO05D005597 4.4e-64 248.8 226 59.3
Nn7g37005 Nelumbo nucifera HOM05D004479 ORTHO05D005597 4.4e-64 248.8 225 58.2
Sed0022371 Sechium edule HOM05D004479 ORTHO05D005597 5.7e-64 248.4 212 62.7
Gorai.010G142700 Gossypium raimondii HOM05D004479 ORTHO05D005597 9.7e-64 247.7 212 61.8
MELO3C026710.2 Cucumis melo HOM05D004479 ORTHO05D005597 1.3e-63 247.3 223 60.1
SGA_v2.0_scaffold122G33268 Striga asiatica HOM05D004479 ORTHO05D005597 1.3e-63 247.3 244 54.5
Glyma.13G372700 Glycine max HOM05D004479 ORTHO05D005597 1.7e-63 246.9 225 59.6
VMungo1080G0276 Vigna mungo HOM05D004479 ORTHO05D005597 1.7e-63 246.9 211 64.0
CsaV3_3G030520 Cucumis sativus L. HOM05D004479 ORTHO05D005597 2.2e-63 246.5 223 60.1
MBI13_g01743_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 2.8e-63 246.1 216 58.3
MBI13_g34036_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 2.8e-63 246.1 216 58.3
RcHm_v2.0_Chr4g0395701 Rosa chinensis HOM05D004479 ORTHO05D005597 3.7e-63 245.7 208 61.1
GSVIVG01029540001 Vitis vinifera HOM05D004479 ORTHO05D005597 1.1e-62 244.2 216 60.2
Solyc03g123960.3 Solanum lycopersicum HOM05D004479 ORTHO05D005597 1.4e-62 243.8 216 60.2
Lj6C65T2 Lonicera japonica HOM05D004479 ORTHO05D005597 1.8e-62 243.4 217 59.9
PGSC0003DMG400009164 Solanum tuberosum HOM05D004479 ORTHO05D005597 1.8e-62 243.4 216 59.7
Peaxi162Scf00038g02656 Petunia axillaris HOM05D004479 ORTHO05D005597 2.4e-62 243.0 216 59.7
MSTRG.10879 Avicennia marina HOM05D004479 ORTHO05D005597 3.1e-62 242.7 245 54.7
CDE02G4004 Ceratophyllum demersum HOM05D004479 ORTHO05D005597 7.0e-62 241.5 224 57.6
Glyma.12G188300 Glycine max HOM05D004479 ORTHO05D005597 7.0e-62 241.5 209 62.2
CSS0019442 Camellia sinensis var. sinensis HOM05D004479 ORTHO05D005597 9.1e-62 241.1 216 58.8
Dinv09182 Davidia involucrata HOM05D004479 ORTHO05D005597 1.2e-61 240.7 225 58.2
Oeu049641.1 Olea europaea HOM05D004479 ORTHO05D005597 1.2e-61 240.7 237 54.0
Aqoxy7G02788 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 4.5e-61 238.8 212 59.0
Cc04_g00200 Coffea canephora HOM05D004479 ORTHO05D005597 4.5e-61 238.8 225 58.2
TAR626G0959 Trochodendron aralioides HOM05D004479 ORTHO05D005597 4.5e-61 238.8 243 55.6
Migut.I01194 Erythranthe guttata HOM05D004479 ORTHO05D005597 1.0e-60 237.7 229 55.9
vmacro18747 Vaccinium macrocarpon HOM05D004479 ORTHO05D005597 1.0e-60 237.7 223 57.8
EL10Ac7g18162 Beta vulgaris HOM05D004479 ORTHO05D005597 1.3e-60 237.3 240 53.3
AUR62001343 Chenopodium quinoa HOM05D004479 ORTHO05D005597 1.3e-60 237.3 212 57.5
Hma1.2p1_1111F.1_g258400 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 1.3e-60 237.3 231 56.3
Nitab4.5_0004918g0010 Nicotiana tabacum HOM05D004479 ORTHO05D005597 1.3e-60 237.3 257 52.9
CAN.G790.12 Capsicum annuum HOM05D004479 ORTHO05D005597 2.2e-60 236.5 243 54.7
QL05p084035 Quercus lobata HOM05D004479 ORTHO05D005597 2.9e-60 236.1 231 54.5
FvH4_4g04880 Fragaria vesca HOM05D004479 ORTHO05D005597 3.8e-60 235.7 227 57.3
unitig_748.g8028 Utricularia gibba HOM05D004479 ORTHO05D005597 3.8e-60 235.7 216 58.3
Ah.15g094320 Amaranthus hybridus HOM05D004479 ORTHO05D005597 6.5e-60 235.0 244 53.7
Rhsim08G0249800 Rhododendron simsii HOM05D004479 ORTHO05D005597 6.5e-60 235.0 223 56.5
ECA234G3188 Erigeron canadensis HOM05D001810 ORTHO05D005662 8.5e-60 234.6 213 57.3
Sc12g0011150 Simmondsia chinensis HOM05D004479 ORTHO05D005597 8.5e-60 234.6 246 52.4
HanXRQChr12g0359691 Helianthus annuus HOM05D004479 ORTHO05D005597 5.5e-59 231.9 212 58.0
Nitab4.5_0005664g0060 Nicotiana tabacum HOM05D004479 ORTHO05D005597 5.5e-59 231.9 243 53.9
FAN22G0181 Fragaria x ananassa HOM05D004479 ORTHO05D005597 1.2e-58 230.7 255 52.9
Lsat_1_v5_gn_5_137281 Lactuca sativa HOM05D004479 ORTHO05D005597 4.7e-58 228.8 221 55.2
DCAR_030619 Daucus carota HOM05D004479 ORTHO05D005597 6.1e-58 228.4 241 51.9
Sopen03g041690 Solanum pennellii HOM05D004479 ORTHO05D005597 8.0e-58 228.0 252 52.0
FAN17G0751 Fragaria x ananassa HOM05D004479 ORTHO05D005597 1.0e-57 227.6 235 54.0
Nitab4.5_0002664g0040 Nicotiana tabacum HOM05D004479 ORTHO05D005597 1.0e-57 227.6 271 50.2
Actinidia21882 Actinidia chinensis HOM05D004479 ORTHO05D005597 1.8e-57 226.9 239 53.6
Cpa.g.sc1515.2 Carica papaya HOM05D004479 ORTHO05D005597 2.0e-56 223.4 197 61.4
SalBow6G0079 Salvia bowleyana HOM05D004479 ORTHO05D005597 1.7e-55 220.3 250 49.2
PSO063G0217 Papaver somniferum HOM05D004479 ORTHO05D005597 2.8e-55 219.5 243 51.9
PSO170G2367 Papaver somniferum HOM05D004479 ORTHO05D005597 6.3e-55 218.4 243 51.9
PSO384G0383 Papaver somniferum HOM05D004479 ORTHO05D005597 6.3e-55 218.4 243 51.9
Gohir.A06G118600 Gossypium hirsutum HOM05D004479 ORTHO05D005597 8.3e-55 218.0 212 56.1
Haze_16264 Corylus avellana HOM05D004479 ORTHO05D005597 1.4e-54 217.2 190 61.1
HPP92_008247 Vanilla planifolia HOM05D004479 ORTHO05D005597 3.1e-54 216.1 216 53.7
Hund18609 Selenicereus undatus HOM05D004479 ORTHO05D005597 4.1e-54 215.7 240 49.6
Os03g0423800 Oryza sativa ssp. japonica HOM05D004479 ORTHO05D005597 5.4e-54 215.3 218 52.8
Zm00001eb320420 Zea mays HOM05D004479 ORTHO05D005597 1.2e-53 214.2 218 52.8
Hund18598 Selenicereus undatus HOM05D004479 ORTHO05D005597 1.0e-52 211.1 175 60.6
AUR62025661 Chenopodium quinoa HOM05D004479 ORTHO05D005597 5.0e-52 208.8 174 60.9
Dinv37783 Davidia involucrata HOM05D004479 ORTHO05D005597 1.9e-51 206.8 190 59.5
ATR0626G211 Amborella trichopoda HOM05D004479 ORTHO05D005597 4.2e-51 205.7 212 53.3
RcHm_v2.0_Chr4g0395721 Rosa chinensis HOM05D004479 ORTHO05D005597 9.5e-51 204.5 162 66.0
Cfa002151 Carpinus fangiana HOM05D004479 ORTHO05D005597 2.1e-50 203.4 167 65.3
Pp3c18_4030 Physcomitrium patens HOM05D004479 ORTHO05D005597 2.0e-45 186.8 227 44.1
Oeu062492.1 Olea europaea HOM05D004479 ORTHO05D005597 1.8e-38 163.7 227 41.4
SMO114G0145 Selaginella moellendorffii HOM05D004479 ORTHO05D005597 1.8e-38 163.7 218 42.2
Mapoly0029s0023 Marchantia polymorpha HOM05D004479 ORTHO05D005597 3.9e-36 156.0 223 39.0
AagrBONN_evm.TU.Sc2ySwM_117.1357 Anthoceros agrestis HOM05D004479 ORTHO05D005597 5.0e-36 155.6 211 41.7
AagrBONN_evm.TU.Sc2ySwM_117.2251 Anthoceros agrestis HOM05D004479 ORTHO05D005597 4.3e-35 152.5 210 41.0
Ca_04816_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 3.4e-32 142.9 212 41.0
CARHR145470 Cardamine hirsuta HOM05D004479 ORTHO05D005597 5.8e-32 142.1 110 69.1
CBR_g41305 Chara braunii HOM05D004479 ORTHO05D005597 3.7e-31 139.4 207 37.7
PSO836G0001 Papaver somniferum HOM05D004479 ORTHO05D005597 6.0e-29 132.1 160 51.2
SEGI_11469 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 3.0e-28 129.8 121 56.2
Gohir.D06G122500 Gossypium hirsutum HOM05D004479 ORTHO05D005597 4.7e-26 122.5 105 62.9
Psat1g118080 Pisum sativum HOM05D004479 ORTHO05D005597 2.7e-21 106.7 87 65.5
QL03p033126 Quercus lobata HOM05D004479 ORTHO05D005597 1.6e-13 80.9 69 60.9
Actinidia21652 Actinidia chinensis HOM05D004479 ORTHO05D005597 1.0e-12 78.2 65 52.3
SHI42601 Sapria himalayana HOM05D004479 ORTHO05D005597 4.0e-09 66.2 156 35.3
SHI42840 Sapria himalayana HOM05D004479 ORTHO05D005597 9.0e-09 65.1 134 35.8
SHI24407 Sapria himalayana HOM05D004479 ORTHO05D005597 1.2e-08 64.7 64 51.6
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 6.4e-07 58.9 39 71.8
C09p24010 Brassica napus HOM05D002960 ORTHO05D042139 6.4e-07 58.9 39 71.8
BolC9t55321H Brassica oleracea HOM05D002960 ORTHO05D042139 6.4e-07 58.9 39 71.8
Peaxi162Scf00038g02640 Petunia axillaris HOM05D004479 ORTHO05D029161 8.4e-07 58.5 89 41.6
SEGI_18721 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 1.1e-06 58.2 85 34.1


User provided reference genes

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