Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31184 Brassica carinata HOM05D002318 ORTHO05D008744 2.0e-189 665.6 333 100.0
BcaC06g34000 Brassica carinata HOM05D002318 ORTHO05D008744 4.1e-171 604.7 333 94.0
C07p33850 Brassica napus HOM05D002318 ORTHO05D008744 8.6e-169 597.0 335 93.7
BolC7t43899H Brassica oleracea HOM05D002318 ORTHO05D008744 2.5e-168 595.5 335 93.4
BraA06t27203Z Brassica rapa HOM05D002318 ORTHO05D008744 2.1e-167 592.4 335 93.1
Thhalv10004578m.g Eutrema salsugineum HOM05D002318 ORTHO05D008744 1.1e-166 590.1 333 91.3
Sp2g14310 Schrenkiella parvula HOM05D002318 ORTHO05D008744 2.6e-165 585.5 334 91.3
CARHR145730 Cardamine hirsuta HOM05D002318 ORTHO05D008744 9.5e-160 567.0 334 87.4
AT2G03390 Arabidopsis thaliana HOM05D002318 ORTHO05D008744 2.8e-159 565.5 333 87.4
AL5G13100 Arabidopsis lyrata HOM05D002318 ORTHO05D008744 1.4e-158 563.1 334 86.5
AL5G13140 Arabidopsis lyrata HOM05D002318 ORTHO05D008744 1.4e-158 563.1 334 86.5
Carub.0005s0236 Capsella rubella HOM05D002318 ORTHO05D008744 3.4e-157 558.5 334 85.3
Aa31LG2G7170 Aethionema arabicum HOM05D002318 ORTHO05D008744 5.3e-150 534.6 345 80.9
A06p43150 Brassica napus HOM05D002318 ORTHO05D008744 1.9e-136 489.6 288 91.3
THA.LOC104805183 Tarenaya hassleriana HOM05D002318 ORTHO05D008744 9.6e-136 487.3 336 77.4
Atru.chr11.1690 Acer truncatum HOM05D002318 ORTHO05D008744 5.5e-123 444.9 339 71.4
Cpa.g.sc1.87 Carica papaya HOM05D002318 ORTHO05D008744 1.5e-120 436.8 334 71.6
Psat2g128360 Pisum sativum HOM05D002318 ORTHO05D008744 9.7e-120 434.1 337 67.7
CiPaw.05G128000 Carya illinoinensis HOM05D002318 ORTHO05D008744 1.3e-119 433.7 340 69.7
TAR622G0636 Trochodendron aralioides HOM05D002318 ORTHO05D004713 6.3e-119 431.4 330 69.7
Sabra10G0122900 Salix brachista HOM05D002318 ORTHO05D008744 2.4e-118 429.5 337 69.1
Ciclev10032054m.g Citrus clementina HOM05D002318 ORTHO05D008744 9.0e-118 427.6 335 69.6
MD16G1064900 Malus domestica HOM05D002318 ORTHO05D008744 3.4e-117 425.6 338 68.6
Potri.010G161600 Populus trichocarpa HOM05D002318 ORTHO05D008744 3.4e-117 425.6 338 68.0
RcHm_v2.0_Chr4g0438871 Rosa chinensis HOM05D002318 ORTHO05D008744 4.5e-117 425.2 340 67.6
TPR.G22412 Trifolium pratense HOM05D002318 ORTHO05D008744 2.9e-116 422.5 344 64.8
Thecc.02G336500 Theobroma cacao HOM05D002318 ORTHO05D008744 5.0e-116 421.8 335 67.8
Cfa008908 Carpinus fangiana HOM05D002318 ORTHO05D008744 3.2e-115 419.1 338 67.5
Haze_11934 Corylus avellana HOM05D002318 ORTHO05D008744 3.2e-115 419.1 338 67.2
Aqoxy3G03551 Aquilegia oxysepala HOM05D002318 ORTHO05D008744 4.2e-115 418.7 335 67.8
COL.COLO4_27936 Corchorus olitorius HOM05D002318 ORTHO05D008744 5.5e-115 418.3 337 65.9
FAN07G2980 Fragaria x ananassa HOM05D002318 ORTHO05D004713 1.2e-114 417.2 337 68.2
QL03p070830 Quercus lobata HOM05D002318 ORTHO05D008744 1.6e-114 416.8 337 68.0
CAN.G1340.13 Capsicum annuum HOM05D002318 ORTHO05D008744 4.6e-114 415.2 341 64.2
CANSAT54G0184 Cannabis sativa HOM05D002318 ORTHO05D008744 6.1e-114 414.8 272 76.1
VMungo1215G2584 Vigna mungo HOM05D002318 ORTHO05D008744 7.9e-114 414.5 335 65.4
PGSC0003DMG401028329 Solanum tuberosum HOM05D002318 ORTHO05D008744 1.4e-113 413.7 340 64.4
PGSC0003DMG402022110 Solanum tuberosum HOM05D002318 ORTHO05D008744 1.4e-113 413.7 340 64.4
Phvul.002G069400 Phaseolus vulgaris HOM05D002318 ORTHO05D008744 2.3e-113 412.9 344 65.1
Sopen05g007450 Solanum pennellii HOM05D002318 ORTHO05D008744 3.9e-113 412.1 340 64.1
Nitab4.5_0000334g0260 Nicotiana tabacum HOM05D002318 ORTHO05D008744 6.7e-113 411.4 340 64.7
Glyma.02G113500 Glycine max HOM05D002318 ORTHO05D008744 8.8e-113 411.0 343 64.4
MBI16_g06774_MAGBIO Magnolia biondii HOM05D002318 ORTHO05D008744 8.8e-113 411.0 337 67.7
HanXRQChr12g0362851 Helianthus annuus HOM05D002318 ORTHO05D008744 1.1e-112 410.6 321 64.8
Lj2g0021077 Lotus japonicus HOM05D002318 ORTHO05D008744 1.1e-112 410.6 342 62.6
PGR119G0925 Punica granatum HOM05D002318 ORTHO05D008744 1.1e-112 410.6 274 74.8
TWI75G0802 Tripterygium wilfordii HOM05D002318 ORTHO05D008744 1.1e-112 410.6 336 65.8
GSVIVG01012177001 Vitis vinifera HOM05D002318 ORTHO05D008744 1.1e-112 410.6 343 64.1
MELO3C011434.2 Cucumis melo HOM05D002318 ORTHO05D008744 3.3e-112 409.1 335 64.8
FAN22G0051 Fragaria x ananassa HOM05D002318 ORTHO05D008744 3.3e-112 409.1 337 67.1
Sc11g0002270 Simmondsia chinensis HOM05D002318 ORTHO05D008744 7.4e-112 407.9 272 73.9
Duzib268G0798 Durio zibethinus HOM05D002318 ORTHO05D008744 9.7e-112 407.5 336 65.5
Ca_04907_v3 Cicer arietinum L. HOM05D002318 ORTHO05D008744 3.7e-111 405.6 330 64.8
CsaV3_6G032440 Cucumis sativus L. HOM05D002318 ORTHO05D008744 6.3e-111 404.8 336 64.6
FAN17G2010 Fragaria x ananassa HOM05D002318 ORTHO05D008744 8.2e-111 404.4 348 65.5
Peaxi162Scf00314g00023 Petunia axillaris HOM05D002318 ORTHO05D008744 1.4e-110 403.7 377 59.2
Eucgr.G02464 Eucalyptus grandis HOM05D002318 ORTHO05D008744 1.8e-110 403.3 264 75.8
Lalb_Chr17g0340981 Lupinus albus HOM05D002318 ORTHO05D008744 1.8e-110 403.3 341 62.8
Lsat_1_v5_gn_8_48101 Lactuca sativa HOM05D002318 ORTHO05D004713 3.1e-110 402.5 324 63.0
Gorai.013G091200 Gossypium raimondii HOM05D002318 ORTHO05D008744 4.1e-110 402.1 336 64.0
Solyc05g012620.4 Solanum lycopersicum HOM05D002318 ORTHO05D008744 1.2e-109 400.6 272 73.5
Gohir.A13G079900 Gossypium hirsutum HOM05D002318 ORTHO05D008744 4.5e-109 398.7 336 63.7
FAN12G0082 Fragaria x ananassa HOM05D002318 ORTHO05D008744 2.5e-107 392.9 337 66.2
Hund05860 Selenicereus undatus HOM05D002318 ORTHO05D008744 7.2e-107 391.3 328 64.0
ATR0111G011 Amborella trichopoda HOM05D002318 ORTHO05D008744 3.6e-106 389.0 289 70.9
AUR62043182 Chenopodium quinoa HOM05D002318 ORTHO05D008744 4.7e-106 388.7 267 72.7
arahy.Tifrunner.gnm1.ann1.T0481B Arachis hypogaea HOM05D002318 ORTHO05D008744 3.0e-105 386.0 345 62.0
CSS0013540 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 3.9e-105 385.6 256 75.8
arahy.Tifrunner.gnm1.ann1.T5ZGHX Arachis hypogaea HOM05D002318 ORTHO05D008744 5.1e-105 385.2 339 62.5
Cc11_g12380 Coffea canephora HOM05D002318 ORTHO05D008744 8.8e-105 384.4 265 70.9
Oeu021096.1 Olea europaea HOM05D002318 ORTHO05D008744 3.3e-104 382.5 268 72.0
DCAR_027449 Daucus carota HOM05D002318 ORTHO05D008744 4.4e-104 382.1 336 64.0
ClCG08G010240 Citrullus lanatus HOM05D002318 ORTHO05D008744 9.7e-104 380.9 382 58.6
Actinidia19922 Actinidia chinensis HOM05D002318 ORTHO05D008744 2.4e-102 376.3 343 60.6
Migut.L01223 Erythranthe guttata HOM05D002318 ORTHO05D008744 4.1e-102 375.6 268 69.4
CDE04G0061 Ceratophyllum demersum HOM05D002318 ORTHO05D008744 9.1e-102 374.4 272 68.0
Ah.13g073950 Amaranthus hybridus HOM05D002318 ORTHO05D008744 2.6e-101 372.9 300 65.3
Rhsim12G0076700 Rhododendron simsii HOM05D002318 ORTHO05D008744 2.6e-101 372.9 279 68.5
Medtr5g043480 Medicago truncatula HOM05D002318 ORTHO05D008744 4.5e-101 372.1 338 60.7
EL10As3g23350 Beta vulgaris HOM05D002318 ORTHO05D008744 6.5e-100 368.2 308 62.0
ECA233G4874 Erigeron canadensis HOM05D002318 ORTHO05D008744 2.5e-99 366.3 295 64.1
Gohir.D13G079700 Gossypium hirsutum HOM05D002318 ORTHO05D008744 7.2e-99 364.8 336 60.1
vmacro01330 Vaccinium macrocarpon HOM05D002318 ORTHO05D008744 6.1e-98 361.7 301 62.1
Os08g0172200 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D008744 1.0e-97 360.9 266 68.0
Prupe.1G282000 Prunus persica HOM05D002318 ORTHO05D008744 2.3e-97 359.8 337 63.2
Manes.01G030400 Manihot esculenta HOM05D002318 ORTHO05D008744 1.7e-95 353.6 290 69.0
AUR62038089 Chenopodium quinoa HOM05D002318 ORTHO05D008744 5.3e-94 348.6 267 66.7
SEGI_16280 Sequoiadendron giganteum HOM05D002318 ORTHO05D008744 5.0e-92 342.0 272 63.6
SalBow2G2755 Salvia bowleyana HOM05D002318 ORTHO05D008744 2.1e-90 336.7 275 61.1
Nn3g17371 Nelumbo nucifera HOM05D002318 ORTHO05D008744 4.0e-89 332.4 298 63.1
unitig_22.g6902 Utricularia gibba HOM05D002318 ORTHO05D008744 2.0e-88 330.1 321 56.7
FvH4_4g30500 Fragaria vesca HOM05D002318 ORTHO05D008744 4.1e-86 322.4 280 67.1
Hma1.2p1_0354F.1_g133650 Hydrangea macrophylla HOM05D002318 ORTHO05D008744 1.2e-85 320.9 291 60.5
Dinv34114 Davidia involucrata HOM05D002318 ORTHO05D008744 2.0e-85 320.1 281 65.1
Mapoly0001s0530 Marchantia polymorpha HOM05D002318 ORTHO05D008744 1.3e-84 317.4 248 62.1
Lj6C782T15 Lonicera japonica HOM05D002318 ORTHO05D008744 5.5e-83 312.0 232 68.1
Pp3c7_3960 Physcomitrium patens HOM05D002318 ORTHO05D008744 6.1e-82 308.5 252 59.5
Sed0004708 Sechium edule HOM05D002318 ORTHO05D008744 3.0e-81 306.2 278 62.9
SGA_v2.0_scaffold16G07752 Striga asiatica HOM05D002318 ORTHO05D008744 1.6e-77 293.9 273 56.4
AagrBONN_evm.TU.Sc2ySwM_117.1985 Anthoceros agrestis HOM05D002318 ORTHO05D008744 1.1e-75 287.7 243 56.4
Dinv16705 Davidia involucrata HOM05D002318 ORTHO05D004713 7.0e-70 268.5 222 67.6
PSO591G0040 Papaver somniferum HOM05D002318 ORTHO05D008744 6.6e-68 261.9 206 68.0
Actinidia31948 Actinidia chinensis HOM05D002318 ORTHO05D008744 2.6e-64 250.0 284 50.7
CBR_g27967 Chara braunii HOM05D002318 ORTHO05D008744 3.7e-63 246.1 259 49.4
SMO115G0105 Selaginella moellendorffii HOM05D002318 ORTHO05D008744 4.9e-63 245.7 217 56.2
Aa31sc734G30 Aethionema arabicum HOM05D002318 ORTHO05D008744 3.2e-62 243.0 202 69.8
FAN16G1553 Fragaria x ananassa HOM05D002318 ORTHO05D008744 2.0e-61 240.4 156 78.8
CSS0007300 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 9.2e-54 214.9 219 59.8
Glyma.01G055000 Glycine max HOM05D002318 ORTHO05D008744 3.5e-53 213.0 155 76.8
arahy.Tifrunner.gnm1.ann1.1U2S5X Arachis hypogaea HOM05D002318 ORTHO05D008744 3.9e-52 209.5 232 56.0
arahy.Tifrunner.gnm1.ann1.TF58FW Arachis hypogaea HOM05D002318 ORTHO05D008744 8.6e-52 208.4 232 56.0
CSS0032009 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 4.1e-46 189.5 233 47.2
Zm00001eb370310 Zea mays HOM05D002318 ORTHO05D008744 1.2e-45 188.0 214 51.4
Cre02.g113700 Chlamydomonas reinhardtii HOM05D002318 ORTHO05D008744 2.5e-43 180.3 278 39.6
PRCOL_00000845 Prasinoderma coloniale HOM05D002318 ORTHO05D008744 3.2e-38 163.3 254 35.8
CBR_g50304 Chara braunii HOM05D020303 ORTHO05D021299 9.6e-19 98.6 159 37.1
Glyma.01G054950 Glycine max HOM05D002318 ORTHO05D008744 6.2e-18 95.9 58 75.9
Os01g0764500 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D008744 4.2e-14 83.2 63 60.3
arahy.Tifrunner.gnm1.ann1.QV9UMR Arachis hypogaea HOM05D000001 ORTHO05D000003 2.1e-10 70.9 46 69.6
Lsat_1_v5_gn_5_151580 Lactuca sativa HOM05D002318 ORTHO05D008744 5.8e-08 62.8 98 39.8
Cfa025736 Carpinus fangiana HOM05D020303 ORTHO05D021299 2.5e-06 57.4 70 37.1


User provided reference genes

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