Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31169 Brassica carinata HOM05D016433 ORTHO05D011439 1.6e-32 142.1 70 100.0
BcaC06g31158 Brassica carinata HOM05D016433 ORTHO05D011439 8.2e-29 129.8 70 88.6
C07p34080 Brassica napus HOM05D016433 ORTHO05D011439 5.9e-27 123.6 66 87.9
BolC7t43922H Brassica oleracea HOM05D016433 ORTHO05D011439 5.9e-27 123.6 66 87.9
A06p42940 Brassica napus HOM05D016433 ORTHO05D011439 1.1e-25 119.4 66 84.8
Carub.0005s0286 Capsella rubella HOM05D016433 ORTHO05D011439 1.5e-19 99.0 69 66.7
Sp2g14540 Schrenkiella parvula HOM05D016433 ORTHO05D011439 1.5e-19 99.0 73 71.2
AL5G13510 Arabidopsis lyrata HOM05D016433 ORTHO05D011439 7.0e-12 73.6 47 74.5
QL11p007253 Quercus lobata HOM05D008924 ORTHO05D010909 5.9e-11 70.5 69 53.6
Sp7g02110 Schrenkiella parvula HOM05D010754 ORTHO05D011439 6.5e-10 67.0 70 48.6
BcaB05g23053 Brassica carinata HOM05D010754 ORTHO05D011439 8.5e-10 66.6 77 48.1
BcaB06g27407 Brassica carinata HOM05D010754 ORTHO05D011439 4.2e-09 64.3 71 46.5
CARHR262190 Cardamine hirsuta HOM05D010754 ORTHO05D011439 2.1e-08 62.0 75 44.0
C04p46500 Brassica napus HOM05D010754 ORTHO05D011439 6.1e-08 60.5 56 53.6
Manes.05G111400 Manihot esculenta HOM05D008924 ORTHO05D010909 8.0e-08 60.1 69 47.8
Prupe.1G291000 Prunus persica HOM05D008924 ORTHO05D010909 1.0e-07 59.7 56 55.4
BcaB06g27398 Brassica carinata HOM05D027175 ORTHO05D027554 2.3e-07 58.5 71 49.3
COL.COLO4_27839 Corchorus olitorius HOM05D008924 ORTHO05D010909 3.0e-07 58.2 65 50.8
Cfa008852 Carpinus fangiana HOM05D008924 ORTHO05D010909 1.2e-06 56.2 53 49.1
BcaC08g44438 Brassica carinata HOM05D010754 ORTHO05D011439 1.5e-06 55.8 75 45.3
C06p18810 Brassica napus HOM05D010754 ORTHO05D011439 1.5e-06 55.8 75 45.3
BolC6t37086H Brassica oleracea HOM05D010754 ORTHO05D011439 1.5e-06 55.8 75 45.3
RcHm_v2.0_Chr1g0340821 Rosa chinensis HOM05D008924 ORTHO05D010909 2.0e-06 55.5 69 47.8
Cfa021028 Carpinus fangiana HOM05D008924 ORTHO05D010909 2.6e-06 55.1 53 49.1
Hma1.2p1_0473F.1_g160160 Hydrangea macrophylla HOM05D008924 ORTHO05D010909 2.6e-06 55.1 79 45.6
Gohir.A12G159750 Gossypium hirsutum HOM05D008924 ORTHO05D010909 3.3e-06 54.7 71 46.5
Gorai.008G175600 Gossypium raimondii HOM05D008924 ORTHO05D010909 3.3e-06 54.7 61 54.1
Thecc.02G325400 Theobroma cacao HOM05D008924 ORTHO05D010909 3.3e-06 54.7 45 57.8
A07p20150 Brassica napus HOM05D010754 ORTHO05D011439 4.4e-06 54.3 75 44.0
MD11G1154600 Malus domestica HOM05D008924 ORTHO05D010909 4.4e-06 54.3 76 43.4
BraA07t29714Z Brassica rapa HOM05D010754 ORTHO05D011439 5.7e-06 53.9 75 44.0
C04p46440 Brassica napus HOM05D027175 ORTHO05D027554 7.5e-06 53.5 70 44.3
Gohir.D12G162950 Gossypium hirsutum HOM05D008924 ORTHO05D010909 7.5e-06 53.5 61 52.5
Potri.T170700 Populus trichocarpa HOM05D008924 ORTHO05D010909 7.5e-06 53.5 61 50.8
Eucgr.G02418 Eucalyptus grandis HOM05D008924 ORTHO05D010909 9.7e-06 53.1 60 50.0


User provided reference genes

Program Settings