Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 2.3e-63 245.4 122 100.0
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 2.1e-35 152.5 72 100.0
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 2.1e-35 152.5 72 100.0
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 4.7e-32 141.4 72 94.4
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 4.7e-32 141.4 72 94.4
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 4.7e-32 141.4 72 94.4
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 4.7e-32 141.4 72 94.4
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 4.7e-32 141.4 72 94.4
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 3.4e-30 135.2 72 88.9
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 4.9e-29 131.3 72 86.1
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 8.4e-29 130.6 72 87.5
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 4.2e-28 128.3 72 84.7
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 5.4e-28 127.9 72 84.7
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 5.4e-28 127.9 72 83.3
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 2.7e-27 125.6 72 81.9
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 3.5e-27 125.2 71 81.7
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 4.6e-27 124.8 72 81.9
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 6.0e-27 124.4 72 80.6
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 6.0e-27 124.4 72 80.6
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 1.0e-26 123.6 72 80.6
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 1.0e-26 123.6 72 80.6
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 6.6e-26 120.9 72 76.4
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 5.6e-25 117.9 72 81.9
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 4.8e-24 114.8 72 76.4
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 3.4e-22 108.6 72 69.4
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 9.9e-22 107.1 72 70.8
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 1.3e-21 106.7 72 68.1
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 1.1e-20 103.6 72 66.7
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 1.1e-20 103.6 72 66.7
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 1.4e-20 103.2 72 69.4
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 1.4e-20 103.2 72 69.4
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 1.4e-20 103.2 72 69.4
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 1.9e-20 102.8 72 68.1
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 2.4e-20 102.4 72 69.4
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 2.4e-20 102.4 72 66.7
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 4.2e-20 101.7 72 65.3
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 4.2e-20 101.7 72 68.1
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 4.2e-20 101.7 75 68.0
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 5.4e-20 101.3 71 67.6
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 5.4e-20 101.3 72 66.7
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 7.1e-20 100.9 72 66.7
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 7.1e-20 100.9 72 65.3
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 9.3e-20 100.5 72 66.7
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 1.2e-19 100.1 72 62.5
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 1.2e-19 100.1 72 66.7
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 1.6e-19 99.8 72 63.9
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 2.1e-19 99.4 72 65.3
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 2.1e-19 99.4 72 65.3
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 2.1e-19 99.4 72 65.3
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 2.1e-19 99.4 72 66.7
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 2.1e-19 99.4 72 65.3
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 2.7e-19 99.0 72 66.7
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 2.7e-19 99.0 72 61.1
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 3.5e-19 98.6 72 66.7
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 3.5e-19 98.6 72 62.5
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 4.6e-19 98.2 75 65.3
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 4.6e-19 98.2 75 65.3
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 4.6e-19 98.2 75 65.3
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 4.6e-19 98.2 72 66.7
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 6.0e-19 97.8 72 65.3
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 7.9e-19 97.4 72 62.5
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 7.9e-19 97.4 72 65.3
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 7.9e-19 97.4 72 65.3
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 7.9e-19 97.4 72 65.3
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 1.0e-18 97.1 72 65.3
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 1.0e-18 97.1 72 65.3
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.0e-18 97.1 72 66.7
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 1.0e-18 97.1 72 63.9
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 1.0e-18 97.1 72 63.9
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 1.0e-18 97.1 72 63.9
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 1.3e-18 96.7 72 65.3
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 1.3e-18 96.7 71 62.0
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 1.3e-18 96.7 72 65.3
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 1.7e-18 96.3 72 62.5
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.3e-18 95.9 72 63.9
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 2.3e-18 95.9 72 65.3
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 2.3e-18 95.9 72 61.1
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 2.3e-18 95.9 72 62.5
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 3.0e-18 95.5 72 65.3
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 3.0e-18 95.5 72 62.5
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 3.0e-18 95.5 72 61.1
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 5.1e-18 94.7 71 63.4
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 6.6e-18 94.4 72 62.5
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 6.6e-18 94.4 72 59.7
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 6.6e-18 94.4 72 65.3
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 8.7e-18 94.0 72 62.5
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 1.1e-17 93.6 72 62.5
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 1.1e-17 93.6 72 61.1
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 1.1e-17 93.6 72 65.3
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 1.1e-17 93.6 71 63.4
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 1.1e-17 93.6 72 61.1
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 1.5e-17 93.2 85 55.3
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 1.5e-17 93.2 72 62.5
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 1.9e-17 92.8 72 59.7
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 2.5e-17 92.4 72 59.7
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 2.5e-17 92.4 74 59.5
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 4.3e-17 91.7 72 58.3
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 4.3e-17 91.7 72 59.7
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 4.3e-17 91.7 72 58.3
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 4.3e-17 91.7 72 62.5
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 4.3e-17 91.7 72 63.9
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 5.6e-17 91.3 72 58.3
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 5.6e-17 91.3 74 63.5
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.3e-16 90.1 72 61.1
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 1.3e-16 90.1 72 61.1
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 1.3e-16 90.1 72 56.9
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 1.3e-16 90.1 74 63.5
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 1.3e-16 90.1 73 60.3
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 1.3e-16 90.1 72 62.5
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 1.6e-16 89.7 72 59.7
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.1e-16 89.4 72 59.7
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.1e-16 89.4 72 59.7
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 2.1e-16 89.4 60 68.3
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 2.8e-16 89.0 72 56.9
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 2.8e-16 89.0 72 59.7
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 3.6e-16 88.6 71 60.6
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 3.6e-16 88.6 71 60.6
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 3.6e-16 88.6 71 60.6
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 4.8e-16 88.2 72 56.9
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 4.8e-16 88.2 74 60.8
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 4.8e-16 88.2 74 62.2
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 4.8e-16 88.2 72 56.9
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 1.4e-15 86.7 72 59.7
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 1.8e-15 86.3 72 56.9
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 1.8e-15 86.3 73 60.3
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 2.4e-15 85.9 85 50.6
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 5.3e-15 84.7 72 55.6
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 6.9e-15 84.3 73 56.2
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 6.9e-15 84.3 73 54.8
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 6.9e-15 84.3 72 55.6
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 9.0e-15 84.0 73 57.5
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.2e-14 83.6 72 55.6
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.2e-14 83.6 72 55.6
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 1.5e-14 83.2 72 55.6
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 1.5e-14 83.2 65 60.0
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 1.5e-14 83.2 73 56.2
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 3.4e-14 82.0 73 56.2
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 4.5e-14 81.6 73 54.8
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 1.3e-13 80.1 69 56.5
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 1.7e-13 79.7 60 61.7
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 3.8e-13 78.6 84 51.2
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 4.9e-13 78.2 73 52.1
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 6.4e-13 77.8 72 50.0
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 4.2e-12 75.1 72 50.0
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 1.2e-11 73.6 69 47.8
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 6.0e-11 71.2 82 46.3
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 6.7e-10 67.8 69 50.7
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 1.5e-09 66.6 69 49.3
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 1.5e-09 66.6 82 45.1
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 7.4e-09 64.3 49 57.1
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 1.4e-07 60.1 82 40.2
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 1.0e-05 53.9 36 63.9


User provided reference genes

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