Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 1.3e-142 510.4 415 100.0
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 6.6e-110 401.7 415 74.0
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 6.6e-110 401.7 415 74.0
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 5.2e-107 392.1 418 72.2
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 1.2e-106 391.0 405 73.3
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 1.2e-106 391.0 418 72.0
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 8.4e-97 358.2 440 69.1
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 9.3e-96 354.8 424 65.6
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 1.5e-93 347.4 425 68.5
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 9.0e-91 338.2 414 65.0
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 1.6e-87 327.4 438 64.4
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 2.1e-84 317.0 419 62.5
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 4.0e-83 312.8 420 62.6
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 1.0e-81 308.1 420 62.1
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 1.4e-80 304.3 447 59.7
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 2.5e-80 303.5 396 67.2
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 5.5e-80 302.4 420 61.2
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 3.9e-78 296.2 413 65.6
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 5.1e-78 295.8 425 51.3
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 6.7e-78 295.4 433 55.7
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 7.6e-74 282.0 414 55.1
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 5.5e-72 275.8 467 54.8
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 7.4e-69 265.4 424 61.1
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 1.4e-59 234.6 391 43.5
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 8.5e-57 225.3 451 57.4
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 8.2e-52 208.8 224 59.8
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 3.1e-51 206.8 448 53.3
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 3.0e-38 163.7 444 32.7
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 3.0e-38 163.7 444 32.7
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 4.7e-31 139.8 441 37.6
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 3.0e-30 137.1 445 35.5
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 1.2e-29 135.2 451 30.8
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 6.3e-28 129.4 452 34.7
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 6.3e-28 129.4 449 33.6
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 8.3e-28 129.0 465 38.5
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 1.4e-27 128.3 474 35.0
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 5.4e-27 126.3 451 35.5
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 5.4e-27 126.3 436 39.4
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 9.2e-27 125.6 438 29.7
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 2.7e-26 124.0 438 29.9
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 2.7e-26 124.0 443 34.3
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 1.0e-25 122.1 440 39.5
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 3.3e-24 117.1 431 37.6
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 7.3e-24 115.9 441 29.7
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 7.3e-24 115.9 437 32.5
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 1.6e-23 114.8 450 31.6
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 1.6e-23 114.8 449 31.6
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 2.8e-23 114.0 451 32.2
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 2.3e-22 110.9 462 39.4
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 6.8e-22 109.4 426 31.9
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.2e-21 108.6 427 31.1
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.5e-21 108.2 452 32.3
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 2.6e-21 107.5 439 31.2
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 2.6e-21 107.5 430 39.5
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 2.6e-21 107.5 469 31.1
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 5.7e-21 106.3 450 32.0
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 7.5e-21 105.9 454 28.2
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.3e-20 105.1 465 31.6
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.7e-20 104.8 465 31.6
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 2.9e-20 104.0 447 32.4
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 2.9e-20 104.0 453 38.0
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 3.7e-20 103.6 430 39.1
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 4.9e-20 103.2 430 40.9
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 4.9e-20 103.2 436 29.6
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 8.3e-20 102.4 430 40.7
BcaC04g21425 Brassica carinata HOM05D004568 ORTHO05D005343 1.1e-19 102.1 105 56.2
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.1e-19 102.1 431 41.1
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.4e-19 101.7 411 28.2
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 3.2e-19 100.5 465 30.8
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 7.0e-19 99.4 430 40.5
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 7.0e-19 99.4 426 32.9
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 9.2e-19 99.0 419 30.8
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 9.2e-19 99.0 419 30.8
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 4.6e-18 96.7 439 31.4
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 5.9e-18 96.3 448 35.5
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 3.0e-17 94.0 404 37.1
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 3.9e-17 93.6 422 30.6
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 6.6e-17 92.8 449 28.1
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 2.5e-16 90.9 437 38.7
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 5.6e-16 89.7 450 32.7
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 2.8e-15 87.4 448 29.5
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.8e-15 87.4 412 27.4
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.8e-15 87.4 412 27.4
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 2.8e-15 87.4 244 34.8
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 6.2e-15 86.3 238 39.5
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 1.1e-14 85.5 452 31.9
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.4e-14 85.1 407 26.5
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 1.8e-14 84.7 442 36.7
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 2.3e-14 84.3 407 31.2
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 2.3e-14 84.3 238 45.4
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 3.1e-14 84.0 451 38.8
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 4.4e-13 80.1 230 40.0
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 1.7e-12 78.2 253 38.3
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 1.7e-12 78.2 242 33.9
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 2.9e-12 77.4 432 26.4
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 3.2e-11 73.9 238 34.0
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 3.2e-11 73.9 253 37.9
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 9.2e-11 72.4 236 38.1
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 1.2e-10 72.0 428 25.2
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 1.2e-10 72.0 236 38.1
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 1.6e-10 71.6 237 37.1
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 2.0e-10 71.2 248 33.9
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 3.5e-10 70.5 236 36.9
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 4.6e-10 70.1 95 46.3
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.3e-09 68.6 248 31.9
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 1.3e-09 68.6 327 27.5
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 2.3e-09 67.8 246 30.5
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 6.6e-09 66.2 159 42.8
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 6.6e-09 66.2 421 31.6
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 1.1e-08 65.5 253 37.2
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 1.1e-08 65.5 253 37.2
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 1.9e-08 64.7 237 29.1
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 3.3e-08 63.9 265 36.2
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 3.3e-08 63.9 272 27.6
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 4.3e-08 63.5 255 29.0
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 5.6e-08 63.2 404 25.2
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 5.6e-08 63.2 404 25.2
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 1.6e-07 61.6 429 28.0
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 3.6e-07 60.5 265 36.2
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 3.6e-07 60.5 259 39.8
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 4.7e-07 60.1 194 32.5
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 6.2e-07 59.7 414 31.2
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 1.1e-06 58.9 240 35.4
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 1.1e-06 58.9 428 27.8
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 1.8e-06 58.2 230 27.4
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 1.8e-06 58.2 230 27.4
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 3.1e-06 57.4 242 29.3
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 4.0e-06 57.0 263 28.9
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 5.2e-06 56.6 53 56.6


User provided reference genes

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