Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31102 Brassica carinata HOM05D010938 ORTHO05D012292 9.3e-66 253.4 133 100.0
BolC7t44031H Brassica oleracea HOM05D010938 ORTHO05D012292 8.5e-59 230.3 132 89.4
BcaC06g33936 Brassica carinata HOM05D010938 ORTHO05D012292 2.5e-58 228.8 131 89.3
A06p42350 Brassica napus HOM05D010938 ORTHO05D012292 4.2e-58 228.0 132 87.9
BraA06t27150Z Brassica rapa HOM05D010938 ORTHO05D012292 4.2e-58 228.0 132 87.9
C07p34990 Brassica napus HOM05D010938 ORTHO05D012292 9.4e-58 226.9 132 87.9
BcaC03g17307 Brassica carinata HOM05D010938 ORTHO05D012292 4.8e-46 188.0 133 71.4
C02p52560 Brassica napus HOM05D010938 ORTHO05D012292 4.8e-46 188.0 133 71.4
BolC2t11331H Brassica oleracea HOM05D010938 ORTHO05D012292 8.2e-46 187.2 133 71.4
Thhalv10005072m.g Eutrema salsugineum HOM05D010938 ORTHO05D012292 4.1e-45 184.9 133 70.7
BraA02t08435Z Brassica rapa HOM05D010938 ORTHO05D012292 7.0e-45 184.1 133 69.9
Sp2g15170 Schrenkiella parvula HOM05D010938 ORTHO05D012292 7.0e-45 184.1 133 72.9
BcaB07g30246 Brassica carinata HOM05D010938 ORTHO05D012292 2.0e-44 182.6 133 68.4
A02p34200 Brassica napus HOM05D010938 ORTHO05D012292 5.9e-44 181.0 133 69.2
AL5G14590 Arabidopsis lyrata HOM05D010938 ORTHO05D012292 3.2e-42 175.3 133 66.9
CARHR146920 Cardamine hirsuta HOM05D010938 ORTHO05D012292 5.5e-42 174.5 134 69.4
AT3G25930 Arabidopsis thaliana HOM05D010938 ORTHO05D012292 2.1e-41 172.6 133 69.2
Aa31LG2G6390 Aethionema arabicum HOM05D010938 ORTHO05D012292 2.0e-39 166.0 132 61.4
Carub.0005s0379 Capsella rubella HOM05D010938 ORTHO05D012292 4.1e-37 158.3 129 64.3
THA.LOC104825697 Tarenaya hassleriana HOM05D000483 ORTHO05D012292 5.2e-32 141.4 134 54.5
THA.LOC104824028 Tarenaya hassleriana HOM05D000483 ORTHO05D012292 9.1e-29 130.6 132 52.3
Manes.14G103700 Manihot esculenta HOM05D000483 ORTHO05D012292 2.8e-22 109.0 134 41.8
QL01p041005 Quercus lobata HOM05D000483 ORTHO05D000158 1.8e-21 106.3 132 41.7
Dinv21071 Davidia involucrata HOM05D000483 ORTHO05D000158 2.4e-21 105.9 134 43.3
Dinv31627 Davidia involucrata HOM05D000483 ORTHO05D000158 3.1e-21 105.5 134 42.5
MD16G1041100 Malus domestica HOM05D000483 ORTHO05D000158 3.1e-21 105.5 132 40.9
Thecc.02G226600 Theobroma cacao HOM05D000483 ORTHO05D000158 1.2e-20 103.6 132 41.7
CANSAT01G3008 Cannabis sativa HOM05D000483 ORTHO05D000158 4.5e-20 101.7 125 44.8
TAR374G1235 Trochodendron aralioides HOM05D000483 ORTHO05D000158 3.3e-18 95.5 132 41.7
Duzib248G0562 Durio zibethinus HOM05D000483 ORTHO05D012292 1.6e-17 93.2 132 37.9
TWI79G0807 Tripterygium wilfordii HOM05D000483 ORTHO05D000158 3.6e-17 92.0 132 40.9
PGR102G3117 Punica granatum HOM05D000483 ORTHO05D000158 4.7e-17 91.7 139 41.7
Atru.chr4.1079 Acer truncatum HOM05D000483 ORTHO05D000158 1.4e-16 90.1 132 37.1
Rhsim09G0106700 Rhododendron simsii HOM05D000483 ORTHO05D000158 1.4e-16 90.1 134 37.3
TWI75G1531 Tripterygium wilfordii HOM05D000483 ORTHO05D000158 3.0e-16 89.0 132 38.6
Potri.010G123300 Populus trichocarpa HOM05D000483 ORTHO05D000158 6.8e-16 87.8 127 40.2
Sabra08G0092500 Salix brachista HOM05D000483 ORTHO05D000158 6.8e-16 87.8 132 37.9
vmacro10566 Vaccinium macrocarpon HOM05D000483 ORTHO05D000158 1.5e-15 86.7 134 35.1
Eucgr.B03009 Eucalyptus grandis HOM05D000483 ORTHO05D000158 3.4e-15 85.5 132 37.1
MBI16_g34838_MAGBIO Magnolia biondii HOM05D000483 ORTHO05D000158 5.7e-15 84.7 133 39.1
QL01p041086 Quercus lobata HOM05D000483 ORTHO05D000158 1.7e-14 83.2 132 33.3
HanXRQChr17g0567571 Helianthus annuus HOM05D000483 ORTHO05D000158 2.2e-14 82.8 132 39.4
MSTRG.7660 Avicennia marina HOM05D000483 ORTHO05D000158 2.8e-14 82.4 132 38.6
ClCG05G022610 Citrullus lanatus HOM05D000483 ORTHO05D000158 3.7e-14 82.0 133 36.8
Cc11_g09990 Coffea canephora HOM05D000483 ORTHO05D000158 4.9e-14 81.6 134 35.8
Haze_17498 Corylus avellana HOM05D000483 ORTHO05D000158 6.3e-14 81.3 132 34.8
Peaxi162Scf00596g00410 Petunia axillaris HOM05D000483 ORTHO05D000158 6.3e-14 81.3 138 37.0
Cfa018583 Carpinus fangiana HOM05D000483 ORTHO05D000158 8.3e-14 80.9 132 34.1
Eucgr.G02310 Eucalyptus grandis HOM05D000483 ORTHO05D000158 8.3e-14 80.9 133 33.1
Nn3g17874 Nelumbo nucifera HOM05D000483 ORTHO05D000158 1.4e-13 80.1 122 41.0
Nn4g23880 Nelumbo nucifera HOM05D000483 ORTHO05D000158 1.8e-13 79.7 131 36.6
unitig_8.g3436 Utricularia gibba HOM05D000483 ORTHO05D000158 1.8e-13 79.7 150 31.3
Sabra10G0093400 Salix brachista HOM05D000483 ORTHO05D000158 2.4e-13 79.3 132 32.6
ECA234G1173 Erigeron canadensis HOM05D000483 ORTHO05D000158 3.2e-13 79.0 132 38.6
Eucgr.B03008 Eucalyptus grandis HOM05D000483 ORTHO05D000158 3.2e-13 79.0 132 34.8
Potri.010G123400 Populus trichocarpa HOM05D000483 ORTHO05D000158 3.2e-13 79.0 132 31.8
RcHm_v2.0_Chr4g0434961 Rosa chinensis HOM05D000483 ORTHO05D000158 3.2e-13 79.0 122 39.3
Sed0025113 Sechium edule HOM05D000483 ORTHO05D000158 3.2e-13 79.0 136 33.1
CsaV3_5G034430 Cucumis sativus L. HOM05D000483 ORTHO05D000158 4.1e-13 78.6 132 33.3
SGA_v2.0_scaffold38G14944 Striga asiatica HOM05D000483 ORTHO05D000158 5.4e-13 78.2 132 37.9
CDE08G1069 Ceratophyllum demersum HOM05D000483 ORTHO05D000158 9.2e-13 77.4 133 34.6
MELO3C012258.2 Cucumis melo HOM05D000483 ORTHO05D000158 9.2e-13 77.4 132 32.6
Dinv21070 Davidia involucrata HOM05D000483 ORTHO05D000158 9.2e-13 77.4 133 36.8
Duzib248G1407 Durio zibethinus HOM05D000483 ORTHO05D000158 9.2e-13 77.4 132 34.8
Nn3g17872 Nelumbo nucifera HOM05D000483 ORTHO05D000158 1.2e-12 77.0 122 36.9
Lj3A1013T43 Lonicera japonica HOM05D000483 ORTHO05D000158 1.6e-12 76.6 132 36.4
Potri.013G112300 Populus trichocarpa HOM05D000483 ORTHO05D000158 1.6e-12 76.6 126 36.5
Sabra13G0095400 Salix brachista HOM05D000483 ORTHO05D000158 1.6e-12 76.6 124 35.5
COL.COLO4_05075 Corchorus olitorius HOM05D000483 ORTHO05D000158 2.0e-12 76.3 134 36.6
Prupe.1G313000 Prunus persica HOM05D000483 ORTHO05D000158 2.0e-12 76.3 132 35.6
FAN22G0552 Fragaria x ananassa HOM05D000483 ORTHO05D000158 2.7e-12 75.9 122 37.7
Hma1.2p1_0061F.1_g033720 Hydrangea macrophylla HOM05D000483 ORTHO05D000158 3.5e-12 75.5 132 37.9
Nitab4.5_0021859g0010 Nicotiana tabacum HOM05D000483 ORTHO05D000158 3.5e-12 75.5 132 35.6
Thecc.02G226500 Theobroma cacao HOM05D000483 ORTHO05D000158 3.5e-12 75.5 132 34.1
Gohir.A04G097900 Gossypium hirsutum HOM05D000483 ORTHO05D000158 4.5e-12 75.1 132 34.8
Nitab4.5_0003715g0060 Nicotiana tabacum HOM05D000483 ORTHO05D000158 4.5e-12 75.1 132 34.1
TAR374G0636 Trochodendron aralioides HOM05D000483 ORTHO05D000158 5.9e-12 74.7 132 35.6
Oeu034230.1 Olea europaea HOM05D000483 ORTHO05D000158 7.8e-12 74.3 132 35.6
PGR102G1756 Punica granatum HOM05D000483 ORTHO05D000158 7.8e-12 74.3 132 32.6
Gohir.D04G137700 Gossypium hirsutum HOM05D000483 ORTHO05D000158 1.0e-11 73.9 132 34.1
Gorai.012G122100 Gossypium raimondii HOM05D000483 ORTHO05D000158 1.0e-11 73.9 132 34.1
Cfa015870 Carpinus fangiana HOM05D000483 ORTHO05D000158 1.3e-11 73.6 132 34.1
CDE09G0523 Ceratophyllum demersum HOM05D000483 ORTHO05D000158 2.3e-11 72.8 123 34.1
Sabra10G0093300 Salix brachista HOM05D000483 ORTHO05D000158 2.3e-11 72.8 122 35.2
MSTRG.7659 Avicennia marina HOM05D000483 ORTHO05D000158 2.9e-11 72.4 132 35.6
CiPaw.05G239100 Carya illinoinensis HOM05D000483 ORTHO05D000158 2.9e-11 72.4 133 37.6
FAN12G2162 Fragaria x ananassa HOM05D000483 ORTHO05D000158 2.9e-11 72.4 122 36.1
GSVIVG01011879001 Vitis vinifera HOM05D000483 ORTHO05D000158 3.9e-11 72.0 122 37.7
Peaxi162Scf00753g00437 Petunia axillaris HOM05D000483 ORTHO05D000158 5.0e-11 71.6 132 35.6
SalBow8G4957 Salvia bowleyana HOM05D000483 ORTHO05D000158 6.6e-11 71.2 132 35.6
GSVIVG01011877001 Vitis vinifera HOM05D000483 ORTHO05D000158 6.6e-11 71.2 122 37.7
CAN.G610.68 Capsicum annuum HOM05D000483 ORTHO05D000158 1.1e-10 70.5 132 34.1
Cc11_g09970 Coffea canephora HOM05D000483 ORTHO05D000158 1.1e-10 70.5 132 31.8
MD13G1040100 Malus domestica HOM05D000483 ORTHO05D000158 1.1e-10 70.5 122 36.1
TAR622G0685 Trochodendron aralioides HOM05D000483 ORTHO05D000158 1.1e-10 70.5 118 36.4
Actinidia13657 Actinidia chinensis HOM05D000483 ORTHO05D000158 1.5e-10 70.1 133 33.8
Potri.010G123200 Populus trichocarpa HOM05D000483 ORTHO05D000158 1.5e-10 70.1 122 34.4
unitig_22.g6868 Utricularia gibba HOM05D000483 ORTHO05D000158 1.5e-10 70.1 132 32.6
Manes.14G103900 Manihot esculenta HOM05D000483 ORTHO05D000158 3.3e-10 68.9 132 32.6
CAN.G610.71 Capsicum annuum HOM05D000483 ORTHO05D000158 5.6e-10 68.2 132 32.6
CANSAT01G0015 Cannabis sativa HOM05D000483 ORTHO05D000158 1.2e-09 67.0 134 32.8
Ciclev10017054m.g Citrus clementina HOM05D000483 ORTHO05D000158 1.2e-09 67.0 132 31.1
Actinidia38373 Actinidia chinensis HOM05D000483 ORTHO05D000158 2.8e-09 65.9 133 34.6
Aqoxy3G00269 Aquilegia oxysepala HOM05D000483 ORTHO05D000158 2.8e-09 65.9 132 31.1
Rhsim03G0142300 Rhododendron simsii HOM05D000483 ORTHO05D000158 1.0e-08 63.9 93 32.3
Actinidia14902 Actinidia chinensis HOM05D000483 ORTHO05D000158 1.4e-08 63.5 64 45.3
Cpa.g.sc65.41 Carica papaya HOM05D000483 ORTHO05D000158 1.8e-08 63.2 125 32.8
Atru.chr11.131 Acer truncatum HOM05D000483 ORTHO05D000158 1.5e-07 60.1 132 31.8
CSS0036608 Camellia sinensis var. sinensis HOM05D000483 ORTHO05D000158 4.4e-07 58.5 70 35.7
Nn3g17870 Nelumbo nucifera HOM05D000483 ORTHO05D000158 5.8e-07 58.2 69 42.0
QL01p040953 Quercus lobata HOM05D000483 ORTHO05D000158 7.5e-07 57.8 94 44.7
Hund25057 Selenicereus undatus HOM05D000483 ORTHO05D000158 7.5e-07 57.8 132 28.0
Lsat_1_v5_gn_4_15860 Lactuca sativa HOM05D000483 ORTHO05D000158 9.8e-07 57.4 122 32.8
Sabra08G0092600 Salix brachista HOM05D000483 ORTHO05D000158 1.7e-06 56.6 122 32.0
GSVIVG01011881001 Vitis vinifera HOM05D000483 ORTHO05D000158 2.2e-06 56.2 78 32.1
Cc11_g09980 Coffea canephora HOM05D000483 ORTHO05D000158 3.7e-06 55.5 145 30.3
CSS0024129 Camellia sinensis var. sinensis HOM05D000483 ORTHO05D000158 6.4e-06 54.7 67 37.3
Nn3g17875 Nelumbo nucifera HOM05D000483 ORTHO05D000158 6.4e-06 54.7 125 31.2


User provided reference genes

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