Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31090 Brassica carinata HOM05D006855 ORTHO05D008695 3.4e-239 831.2 416 100.0
C07p35130 Brassica napus HOM05D006855 ORTHO05D008695 9.0e-208 726.9 415 90.6
BolC7t44041H Brassica oleracea HOM05D006855 ORTHO05D008695 7.6e-207 723.8 415 89.9
BcaC06g33927 Brassica carinata HOM05D006855 ORTHO05D008695 1.8e-203 712.6 415 88.4
BraA06t27139Z Brassica rapa HOM05D006855 ORTHO05D008695 2.8e-201 705.3 418 88.5
A06p42230 Brassica napus HOM05D006855 ORTHO05D008695 1.5e-199 699.5 418 87.8
Thhalv10004274m.g Eutrema salsugineum HOM05D006855 ORTHO05D008695 3.4e-199 698.4 430 84.2
Sp2g15320 Schrenkiella parvula HOM05D006855 ORTHO05D008695 2.9e-198 695.3 430 84.0
CARHR147120 Cardamine hirsuta HOM05D006855 ORTHO05D008695 5.5e-189 664.5 426 81.2
AL5G14830 Arabidopsis lyrata HOM05D006855 ORTHO05D008695 3.2e-181 638.6 426 79.6
Carub.0005s0400 Capsella rubella HOM05D006855 ORTHO05D008695 4.5e-175 618.2 436 76.6
Aa31LG2G6230 Aethionema arabicum HOM05D006855 ORTHO05D008695 7.2e-173 610.9 445 71.9
THA.LOC104825678 Tarenaya hassleriana HOM05D006855 ORTHO05D008695 2.5e-157 559.3 423 70.0
AT3G26115 Arabidopsis thaliana HOM05D006855 ORTHO05D008695 2.7e-143 512.7 361 77.3
TWI75G0344 Tripterygium wilfordii HOM05D006855 ORTHO05D008695 4.6e-135 485.3 420 60.0
Duzib248G0606 Durio zibethinus HOM05D006855 ORTHO05D008695 3.3e-133 479.2 430 57.7
Atru.chr11.2187 Acer truncatum HOM05D006855 ORTHO05D008695 1.2e-132 477.2 408 62.3
COL.COLO4_23530 Corchorus olitorius HOM05D006855 ORTHO05D008695 6.2e-132 474.9 407 59.7
Manes.12G019600 Manihot esculenta HOM05D006855 ORTHO05D008695 2.3e-131 473.0 404 60.4
Peaxi162Scf00050g00819 Petunia axillaris HOM05D006855 ORTHO05D008695 2.3e-131 473.0 397 61.7
Potri.010G051200 Populus trichocarpa HOM05D006855 ORTHO05D008695 4.0e-131 472.2 420 57.9
Thecc.02G266900 Theobroma cacao HOM05D006855 ORTHO05D008695 5.2e-131 471.9 433 57.0
Ciclev10031545m.g Citrus clementina HOM05D006855 ORTHO05D008695 1.2e-130 470.7 457 56.7
FAN17G2133 Fragaria x ananassa HOM05D006855 ORTHO05D008695 9.8e-130 467.6 421 58.7
FAN22G2334 Fragaria x ananassa HOM05D006855 ORTHO05D008695 3.7e-129 465.7 421 59.4
Gohir.D12G150600 Gossypium hirsutum HOM05D006855 ORTHO05D008695 3.7e-129 465.7 426 59.4
FAN12G0810 Fragaria x ananassa HOM05D006855 ORTHO05D008695 4.9e-129 465.3 421 58.4
Nitab4.5_0015117g0010 Nicotiana tabacum HOM05D006855 ORTHO05D008695 4.9e-129 465.3 423 58.6
TAR629G1507 Trochodendron aralioides HOM05D006855 ORTHO05D008695 2.4e-128 463.0 410 59.3
Eucgr.H02451 Eucalyptus grandis HOM05D006855 ORTHO05D008695 5.4e-128 461.8 432 58.3
RcHm_v2.0_Chr4g0432431 Rosa chinensis HOM05D006855 ORTHO05D008695 9.2e-128 461.1 408 59.3
Gorai.008G162100 Gossypium raimondii HOM05D006855 ORTHO05D008695 2.7e-127 459.5 426 58.5
Solyc01g008900.4 Solanum lycopersicum HOM05D006855 ORTHO05D008695 2.7e-127 459.5 397 60.2
Sopen01g004390 Solanum pennellii HOM05D006855 ORTHO05D008695 7.8e-127 458.0 397 59.9
CAN.G379.20 Capsicum annuum HOM05D006855 ORTHO05D008695 1.7e-126 456.8 402 58.7
MD13G1105700 Malus domestica HOM05D006855 ORTHO05D008695 1.7e-126 456.8 401 60.1
PGSC0003DMG400022710 Solanum tuberosum HOM05D006855 ORTHO05D008695 1.7e-126 456.8 422 58.3
Glyma.11G244400 Glycine max HOM05D006855 ORTHO05D008695 1.9e-125 453.4 432 57.6
GSVIVG01000584001 Vitis vinifera HOM05D006855 ORTHO05D008695 1.9e-125 453.4 423 57.7
Nn3g16630 Nelumbo nucifera HOM05D006855 ORTHO05D008695 3.3e-125 452.6 411 58.9
TPR.G5676 Trifolium pratense HOM05D006855 ORTHO05D008695 3.3e-125 452.6 404 58.4
FAN07G2733 Fragaria x ananassa HOM05D006855 ORTHO05D008695 4.3e-125 452.2 419 57.5
Dinv14753 Davidia involucrata HOM05D006855 ORTHO05D008695 5.6e-125 451.8 408 60.5
arahy.Tifrunner.gnm1.ann1.FYV5AX Arachis hypogaea HOM05D006855 ORTHO05D008695 7.3e-125 451.4 403 58.6
Lsat_1_v5_gn_8_153661 Lactuca sativa HOM05D006855 ORTHO05D008695 7.3e-125 451.4 389 59.4
HanXRQChr12g0371791 Helianthus annuus HOM05D006855 ORTHO05D008695 9.5e-125 451.1 420 57.1
CSS0002421 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 1.2e-124 450.7 399 59.9
Lalb_Chr11g0075551 Lupinus albus HOM05D006855 ORTHO05D008695 4.7e-124 448.7 435 55.6
Migut.K00633 Erythranthe guttata HOM05D006855 ORTHO05D008695 8.1e-124 448.0 407 59.5
Medtr3g086360 Medicago truncatula HOM05D006855 ORTHO05D008695 1.1e-123 447.6 407 57.5
Psat5g092640 Pisum sativum HOM05D006855 ORTHO05D008695 3.1e-123 446.0 404 57.2
Gohir.A12G146000 Gossypium hirsutum HOM05D006855 ORTHO05D008695 8.9e-123 444.5 419 58.5
CiPaw.05G176800 Carya illinoinensis HOM05D006855 ORTHO05D008695 1.5e-122 443.7 405 58.5
Ah.02g130370 Amaranthus hybridus HOM05D006855 ORTHO05D008695 5.8e-122 441.8 427 54.1
Aqoxy3G00656 Aquilegia oxysepala HOM05D006855 ORTHO05D008695 7.6e-122 441.4 404 57.9
Aqoxy3G01366 Aquilegia oxysepala HOM05D006855 ORTHO05D008695 7.6e-122 441.4 404 57.9
Cc11_g16140 Coffea canephora HOM05D006855 ORTHO05D008695 1.3e-121 440.7 409 56.7
Lj6g0028045 Lotus japonicus HOM05D006855 ORTHO05D008695 2.2e-121 439.9 397 58.4
Actinidia15119 Actinidia chinensis HOM05D006855 ORTHO05D008695 2.9e-121 439.5 409 58.2
Phvul.001G256400 Phaseolus vulgaris HOM05D006855 ORTHO05D008695 2.9e-121 439.5 400 59.5
MELO3C011916.2 Cucumis melo HOM05D006855 ORTHO05D008695 1.9e-120 436.8 423 55.8
Lj3A1062T101 Lonicera japonica HOM05D006855 ORTHO05D008695 7.1e-120 434.9 388 60.1
CsaV3_5G030740 Cucumis sativus L. HOM05D006855 ORTHO05D008695 2.1e-119 433.3 407 56.5
CANSAT01G1415 Cannabis sativa HOM05D006855 ORTHO05D008695 6.0e-119 431.8 411 56.9
MSTRG.548 Avicennia marina HOM05D006855 ORTHO05D008695 1.0e-118 431.0 416 55.3
PSO210G7557 Papaver somniferum HOM05D006855 ORTHO05D008695 1.0e-118 431.0 414 56.0
Sed0018660 Sechium edule HOM05D006855 ORTHO05D008695 1.0e-118 431.0 420 54.3
AUR62024216 Chenopodium quinoa HOM05D006855 ORTHO05D008695 1.3e-118 430.6 408 54.4
ECA233G5842 Erigeron canadensis HOM05D000068 ORTHO05D000084 2.5e-117 426.4 367 59.7
ClCG05G026110 Citrullus lanatus HOM05D006855 ORTHO05D008695 5.6e-117 425.2 422 54.3
PSO478G2928 Papaver somniferum HOM05D006855 ORTHO05D008695 2.8e-116 422.9 414 54.8
Prupe.1G240700 Prunus persica HOM05D006855 ORTHO05D008695 2.8e-116 422.9 340 64.4
PGR083G2447 Punica granatum HOM05D006855 ORTHO05D008695 1.1e-115 421.0 391 59.3
VMungo1383G3215 Vigna mungo HOM05D000933 ORTHO05D000820 1.2e-114 417.5 392 58.7
ATR0796G133 Amborella trichopoda HOM05D006855 ORTHO05D008695 4.4e-114 415.6 410 54.6
SGA_v2.0_scaffold100G29585 Striga asiatica HOM05D006855 ORTHO05D008695 2.9e-113 412.9 404 54.2
SalBow2G0666 Salvia bowleyana HOM05D006855 ORTHO05D008695 1.1e-112 411.0 415 53.5
CDE02G0600 Ceratophyllum demersum HOM05D006855 ORTHO05D008695 1.9e-112 410.2 390 55.9
HPP92_023148 Vanilla planifolia HOM05D006855 ORTHO05D008695 3.2e-112 409.5 411 53.3
Haze_12292 Corylus avellana HOM05D006855 ORTHO05D008695 5.4e-112 408.7 496 49.6
EL10As2g23185 Beta vulgaris HOM05D006855 ORTHO05D008695 3.5e-111 406.0 435 51.0
AUR62005523 Chenopodium quinoa HOM05D006855 ORTHO05D008695 5.1e-110 402.1 377 54.9
Nitab4.5_0000718g0180 Nicotiana tabacum HOM05D006855 ORTHO05D008695 2.6e-106 389.8 395 55.2
unitig_699.g19941 Utricularia gibba HOM05D002671 ORTHO05D001380 1.6e-100 370.5 380 51.6
Zm00001eb155910 Zea mays HOM05D006855 ORTHO05D008695 1.4e-99 367.5 385 51.9
vmacro16160 Vaccinium macrocarpon HOM05D006855 ORTHO05D008695 1.9e-96 357.1 397 50.6
Mapoly0058s0079 Marchantia polymorpha HOM05D006855 ORTHO05D008695 2.4e-96 356.7 396 48.0
Pp3c22_21870 Physcomitrium patens HOM05D006855 ORTHO05D008695 2.6e-90 336.7 404 46.3
MBI19_g16323_MAGBIO Magnolia biondii HOM05D006855 ORTHO05D008695 4.9e-89 332.4 336 53.9
QL03p056156 Quercus lobata HOM05D006855 ORTHO05D008695 3.7e-84 316.2 298 59.1
Carub.0005s0511 Capsella rubella HOM05D006855 ORTHO05D008695 1.2e-82 311.2 237 72.6
Ca_25129_v3 Cicer arietinum L. HOM05D006855 ORTHO05D008695 5.9e-82 308.9 279 58.1
SMO203G0085 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 2.7e-79 300.1 323 48.6
Sc11g0000830 Simmondsia chinensis HOM05D006855 ORTHO05D008695 1.9e-77 293.9 295 54.9
CSS0027349 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 2.8e-76 290.0 386 44.3
SEGI_15055 Sequoiadendron giganteum HOM05D006855 ORTHO05D008695 4.2e-72 276.2 277 53.1
FvH4_4g25240 Fragaria vesca HOM05D006855 ORTHO05D008695 3.9e-70 269.6 243 58.0
Hund25410 Selenicereus undatus HOM05D006855 ORTHO05D008695 1.0e-65 255.0 287 53.7
SMO203G0059 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 2.8e-60 236.9 402 37.6
SMO327G0033 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 1.7e-57 227.6 289 43.9
Cre01.g031850 Chlamydomonas reinhardtii HOM05D006855 ORTHO05D008695 3.8e-57 226.5 421 34.9
Os01g0695600 Oryza sativa ssp. japonica HOM05D006855 ORTHO05D008695 1.2e-55 221.5 389 37.3
Cpa.g.sc33.79 Carica papaya HOM05D006855 ORTHO05D008695 9.7e-53 211.8 177 60.5
SEGI_08498 Sequoiadendron giganteum HOM05D006855 ORTHO05D008695 3.6e-47 193.4 173 54.9
arahy.Tifrunner.gnm1.ann1.74BAAJ Arachis hypogaea HOM05D006855 ORTHO05D008695 5.7e-45 186.0 205 50.7
SMO203G0223 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 2.3e-41 174.1 240 42.5
FAN14G3171 Fragaria x ananassa HOM05D006855 ORTHO05D008695 2.6e-37 160.6 144 58.3
FAN18G3688 Fragaria x ananassa HOM05D006855 ORTHO05D008695 5.7e-37 159.5 145 58.6
SMO327G0043 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 1.7e-36 157.9 253 39.9
QL03p056162 Quercus lobata HOM05D006855 ORTHO05D008695 1.8e-35 154.5 135 56.3
FAN08G3042 Fragaria x ananassa HOM05D006855 ORTHO05D008695 1.6e-34 151.4 139 56.8
Sabra10G0018700 Salix brachista HOM05D000933 ORTHO05D000820 1.3e-25 121.7 114 56.1
FAN23G2199 Fragaria x ananassa HOM05D006855 ORTHO05D008695 1.5e-21 108.2 100 53.0
FAN15G2953 Fragaria x ananassa HOM05D006855 ORTHO05D008695 2.0e-21 107.8 100 53.0
MSTRG.23199 Avicennia marina HOM05D005071 ORTHO05D006069 1.7e-20 104.8 333 27.3
Sed0005435 Sechium edule HOM05D005071 ORTHO05D006069 6.4e-20 102.8 336 27.1
Lalb_Chr09g0330201 Lupinus albus HOM05D005071 ORTHO05D006069 4.1e-19 100.1 320 27.5
Potri.012G038900 Populus trichocarpa HOM05D005071 ORTHO05D006069 4.1e-19 100.1 334 26.6
PGR083G1095 Punica granatum HOM05D005071 ORTHO05D006069 7.8e-18 95.9 337 26.7
SGA_v2.0_scaffold25G10767 Striga asiatica HOM05D005071 ORTHO05D006069 7.8e-18 95.9 340 26.8
AT1G48420 Arabidopsis thaliana HOM05D005071 ORTHO05D006069 1.3e-17 95.1 336 24.1
Eucgr.H00596 Eucalyptus grandis HOM05D005071 ORTHO05D006069 1.3e-17 95.1 337 26.4
ECA233G3820 Erigeron canadensis HOM05D006855 ORTHO05D008695 8.6e-17 92.4 97 51.5
Migut.O00239 Erythranthe guttata HOM05D005071 ORTHO05D006069 1.1e-16 92.0 324 26.2
Thhalv10011539m.g Eutrema salsugineum HOM05D005071 ORTHO05D006069 1.1e-16 92.0 336 24.1
Sabra12G0027400 Salix brachista HOM05D005071 ORTHO05D006069 1.1e-16 92.0 350 25.7
Actinidia17702 Actinidia chinensis HOM05D005071 ORTHO05D006069 1.9e-16 91.3 335 25.4
arahy.Tifrunner.gnm1.ann1.ESBK1T Arachis hypogaea HOM05D005071 ORTHO05D006069 1.9e-16 91.3 347 25.4
arahy.Tifrunner.gnm1.ann1.ZJN9EZ Arachis hypogaea HOM05D005071 ORTHO05D006069 3.3e-16 90.5 337 25.5
SMO364G0181 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 7.3e-16 89.4 327 26.0
Lj5C165T19 Lonicera japonica HOM05D005071 ORTHO05D006069 1.2e-15 88.6 339 26.8
Thecc.03G069100 Theobroma cacao HOM05D005071 ORTHO05D006069 2.8e-15 87.4 339 24.8
Rhsim08G0124200 Rhododendron simsii HOM05D005071 ORTHO05D006069 4.7e-15 86.7 376 23.7
CSS0015338 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 1.1e-14 85.5 119 41.2
AUR62038575 Chenopodium quinoa HOM05D005071 ORTHO05D006069 1.8e-14 84.7 338 25.4
Oeu038408.4 Olea europaea HOM05D005071 ORTHO05D006069 1.8e-14 84.7 372 23.9
AUR62042043 Chenopodium quinoa HOM05D005071 ORTHO05D006069 2.3e-14 84.3 329 25.5
MCO03G464 Micromonas commoda HOM05D005071 ORTHO05D006069 4.4e-13 80.1 329 27.7
CSS0040008 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 4.9e-12 76.6 134 35.1
Aqoxy3G04132 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 1.9e-11 74.7 318 24.8
Sc24g0002660 Simmondsia chinensis HOM05D005071 ORTHO05D006069 7.1e-11 72.8 322 23.6
EL10Ac8g19579 Beta vulgaris HOM05D005071 ORTHO05D006069 7.8e-10 69.3 329 23.7
Cre07.g319320 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 1.0e-09 68.9 358 22.9
Cre07.g319400 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 1.0e-09 68.9 358 22.9
Pp3s30_410 Physcomitrium patens HOM05D005071 ORTHO05D006069 2.3e-09 67.8 324 23.1
MD06G1235700 Malus domestica HOM05D005071 ORTHO05D006069 2.5e-08 64.3 350 22.6


User provided reference genes

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