Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31044 Brassica carinata HOM05D006531 ORTHO05D007905 2.8e-288 994.6 495 100.0
C07p35780 Brassica napus HOM05D006531 ORTHO05D007905 2.3e-282 974.9 495 98.0
BolC7t44097H Brassica oleracea HOM05D006531 ORTHO05D007905 7.8e-275 949.9 495 95.6
BcaC06g33892 Brassica carinata HOM05D006531 ORTHO05D007905 5.4e-268 927.2 495 93.5
A06p41760 Brassica napus HOM05D006531 ORTHO05D007905 2.9e-261 904.8 497 92.0
BraA06t27096Z Brassica rapa HOM05D006531 ORTHO05D007905 2.9e-261 904.8 497 92.0
Thhalv10003992m.g Eutrema salsugineum HOM05D006531 ORTHO05D007905 2.6e-222 775.4 527 77.2
Sp2g15880 Schrenkiella parvula HOM05D006531 ORTHO05D007905 1.9e-220 769.2 520 77.7
AT3G26750 Arabidopsis thaliana HOM05D006531 ORTHO05D007905 1.8e-218 762.7 517 76.8
AL5G15610 Arabidopsis lyrata HOM05D006531 ORTHO05D007905 8.2e-216 753.8 511 76.5
CARHR147820 Cardamine hirsuta HOM05D006531 ORTHO05D007905 9.4e-212 740.3 504 75.2
Aa31LG2G5790 Aethionema arabicum HOM05D006531 ORTHO05D007905 6.8e-178 627.9 506 68.2
Carub.0005s0479 Capsella rubella HOM05D006531 ORTHO05D007905 1.8e-162 576.6 388 77.6
THA.LOC104819768 Tarenaya hassleriana HOM05D006531 ORTHO05D007905 2.2e-160 569.7 561 57.8
Cpa.g.sc89.75 Carica papaya HOM05D006531 ORTHO05D007905 1.8e-130 470.3 580 46.2
Gorai.007G200500 Gossypium raimondii HOM05D006531 ORTHO05D007905 3.0e-125 453.0 564 47.3
Gohir.D11G188400 Gossypium hirsutum HOM05D006531 ORTHO05D007905 3.9e-125 452.6 564 47.2
Duzib187G1823 Durio zibethinus HOM05D006531 ORTHO05D007905 1.5e-124 450.7 559 47.8
COL.COLO4_22012 Corchorus olitorius HOM05D006531 ORTHO05D007905 6.2e-123 445.3 555 47.2
Thecc.01G028000 Theobroma cacao HOM05D006531 ORTHO05D007905 6.2e-123 445.3 565 46.5
TWI53G1729 Tripterygium wilfordii HOM05D006531 ORTHO05D007905 5.8e-121 438.7 565 44.6
Ciclev10025250m.g Citrus clementina HOM05D006531 ORTHO05D007905 7.6e-121 438.3 561 44.9
Haze_03846 Corylus avellana HOM05D006531 ORTHO05D007905 7.6e-121 438.3 568 46.0
MD15G1254500 Malus domestica HOM05D006531 ORTHO05D007905 1.0e-117 427.9 562 46.8
GSVIVG01018883001 Vitis vinifera HOM05D006531 ORTHO05D007905 2.3e-117 426.8 509 47.9
Atru.chr3.665 Acer truncatum HOM05D006531 ORTHO05D007905 5.1e-117 425.6 581 44.4
Atru.BG.101.p Acer truncatum HOM05D006531 ORTHO05D007905 3.3e-116 422.9 501 48.5
CANSAT21G1927 Cannabis sativa HOM05D006531 ORTHO05D007905 3.3e-116 422.9 559 42.0
RcHm_v2.0_Chr2g0100811 Rosa chinensis HOM05D006531 ORTHO05D007905 7.4e-116 421.8 561 44.0
CsaV3_6G046680 Cucumis sativus L. HOM05D006531 ORTHO05D007905 1.6e-115 420.6 552 42.8
MELO3C007866.2 Cucumis melo HOM05D006531 ORTHO05D007905 8.2e-115 418.3 560 42.3
Dinv05610 Davidia involucrata HOM05D006531 ORTHO05D007905 1.4e-114 417.5 545 44.4
TAR628G0973 Trochodendron aralioides HOM05D006531 ORTHO05D007905 1.4e-114 417.5 590 42.2
FAN19G3073 Fragaria x ananassa HOM05D006531 ORTHO05D007905 2.0e-113 413.7 566 43.8
ClCG01G019940 Citrullus lanatus HOM05D006531 ORTHO05D008656 2.6e-113 413.3 585 41.0
FAN28G0612 Fragaria x ananassa HOM05D006531 ORTHO05D007905 3.4e-113 412.9 566 43.1
FAN23G2909 Fragaria x ananassa HOM05D006531 ORTHO05D007905 4.5e-113 412.5 565 43.0
Actinidia35619 Actinidia chinensis HOM05D006531 ORTHO05D007905 1.0e-112 411.4 577 43.7
FAN26G0669 Fragaria x ananassa HOM05D006531 ORTHO05D007905 1.0e-112 411.4 566 43.3
Potri.007G019733 Populus trichocarpa HOM05D006531 ORTHO05D007905 1.3e-112 411.0 584 42.6
Potri.007G019800 Populus trichocarpa HOM05D006531 ORTHO05D007905 6.5e-112 408.7 585 42.1
FvH4_1g12740 Fragaria vesca HOM05D006531 ORTHO05D007905 1.1e-111 407.9 570 43.5
QL06p035210 Quercus lobata HOM05D006531 ORTHO05D007905 2.5e-111 406.8 598 41.8
Lalb_Chr16g0391021 Lupinus albus HOM05D006531 ORTHO05D007905 9.3e-111 404.8 572 41.8
Prupe.7G159100 Prunus persica HOM05D006531 ORTHO05D007905 6.0e-110 402.1 506 45.7
Glyma.02G053000 Glycine max HOM05D006531 ORTHO05D007905 1.0e-109 401.4 578 41.7
EL10As8g23896 Beta vulgaris HOM05D006531 ORTHO05D007905 1.8e-109 400.6 542 42.6
Lsat_1_v5_gn_4_151921 Lactuca sativa HOM05D006531 ORTHO05D007905 6.7e-109 398.7 505 44.0
Sc07g0000880 Simmondsia chinensis HOM05D006531 ORTHO05D007905 3.3e-108 396.4 519 44.5
Gohir.D11G322533 Gossypium hirsutum HOM05D006531 ORTHO05D007905 4.3e-108 396.0 557 44.0
vmacro17801 Vaccinium macrocarpon HOM05D006531 ORTHO05D007905 5.7e-108 395.6 600 41.3
arahy.Tifrunner.gnm1.ann1.WDDE23 Arachis hypogaea HOM05D006531 ORTHO05D007905 9.7e-108 394.8 568 42.4
arahy.Tifrunner.gnm1.ann1.P54VLQ Arachis hypogaea HOM05D006531 ORTHO05D007905 2.8e-107 393.3 568 41.9
Sabra07G0016900 Salix brachista HOM05D006531 ORTHO05D007905 3.7e-107 392.9 520 44.0
Rhsim08G0121800 Rhododendron simsii HOM05D006531 ORTHO05D007905 3.4e-105 386.3 526 44.1
VMungo0251G0240 Vigna mungo HOM05D006531 ORTHO05D007905 1.7e-104 384.0 568 40.7
DCAR_001553 Daucus carota HOM05D006531 ORTHO05D007905 3.8e-104 382.9 566 41.0
AUR62007614 Chenopodium quinoa HOM05D006531 ORTHO05D007905 1.1e-103 381.3 554 41.5
Oeu056763.1 Olea europaea HOM05D006531 ORTHO05D007905 1.1e-103 381.3 578 41.7
Migut.H02514 Erythranthe guttata HOM05D006531 ORTHO05D007905 1.4e-103 380.9 545 40.7
Ah.03g141200 Amaranthus hybridus HOM05D006531 ORTHO05D007905 1.9e-103 380.6 513 41.7
PGR102G2490 Punica granatum HOM05D006531 ORTHO05D007905 2.5e-103 380.2 539 42.3
AUR62004101 Chenopodium quinoa HOM05D006531 ORTHO05D007905 5.5e-103 379.0 552 41.7
Cc07_g10020 Coffea canephora HOM05D006531 ORTHO05D007905 1.2e-102 377.9 568 40.3
MSTRG.23258 Avicennia marina HOM05D006531 ORTHO05D007905 2.7e-102 376.7 564 40.1
Medtr8g076860 Medicago truncatula HOM05D006531 ORTHO05D007905 2.7e-102 376.7 566 39.0
Hund14004 Selenicereus undatus HOM05D006531 ORTHO05D007905 1.0e-101 374.8 550 42.0
Ca_22340_v3 Cicer arietinum L. HOM05D006531 ORTHO05D007905 2.3e-101 373.6 560 39.6
ECA232G0312 Erigeron canadensis HOM05D006531 ORTHO05D007905 3.0e-101 373.2 511 41.7
TPR.G21544 Trifolium pratense HOM05D006531 ORTHO05D007905 1.1e-100 371.3 562 39.9
Eucgr.J02379 Eucalyptus grandis HOM05D006531 ORTHO05D007905 1.9e-100 370.5 546 40.5
Psat4g096120 Pisum sativum HOM05D006531 ORTHO05D007905 7.4e-100 368.6 558 39.2
Lj4g0004916 Lotus japonicus HOM05D006531 ORTHO05D007905 3.7e-99 366.3 558 41.2
Aqoxy6G01185 Aquilegia oxysepala HOM05D006531 ORTHO05D007905 5.3e-98 362.5 605 37.7
PGSC0003DMG400022568 Solanum tuberosum HOM05D006531 ORTHO05D007905 5.3e-98 362.5 545 39.6
HanXRQChr09g0261281 Helianthus annuus HOM05D006531 ORTHO05D007905 9.1e-98 361.7 498 42.8
Sopen03g006510 Solanum pennellii HOM05D006531 ORTHO05D007905 3.4e-97 359.8 542 39.9
SalBow8G4669 Salvia bowleyana HOM05D006531 ORTHO05D007905 5.9e-97 359.0 558 39.8
PSO675G3692 Papaver somniferum HOM05D006531 ORTHO05D007905 1.0e-96 358.2 584 38.7
PSO541G5850 Papaver somniferum HOM05D006531 ORTHO05D007905 3.2e-95 353.2 591 38.7
Solyc03g033720.4 Solanum lycopersicum HOM05D006531 ORTHO05D007905 5.5e-95 352.4 539 39.3
CAN.G753.1 Capsicum annuum HOM05D006531 ORTHO05D007905 2.1e-94 350.5 543 40.7
Nitab4.5_0011360g0010 Nicotiana tabacum HOM05D006531 ORTHO05D007905 5.1e-93 345.9 570 37.2
CDE04G2389 Ceratophyllum demersum HOM05D006531 ORTHO05D007905 2.0e-92 344.0 589 36.7
Nitab4.5_0001289g0010 Nicotiana tabacum HOM05D006531 ORTHO05D007905 4.1e-90 336.3 596 36.1
Lj2C458T7 Lonicera japonica HOM05D006531 ORTHO05D007905 4.7e-86 322.8 431 44.5
ATR0585G072 Amborella trichopoda HOM05D006531 ORTHO05D007905 1.8e-85 320.9 533 36.6
Os02g0130900 Oryza sativa ssp. japonica HOM05D006531 ORTHO05D007905 1.4e-82 311.2 582 35.9
unitig_0.g471 Utricularia gibba HOM05D006531 ORTHO05D007905 1.4e-77 294.7 507 37.3
HPP92_011628 Vanilla planifolia HOM05D006531 ORTHO05D007905 3.1e-74 283.5 505 37.2
CiPaw.07G051400 Carya illinoinensis HOM05D006531 ORTHO05D007905 1.6e-73 281.2 407 42.0
Sed0004808 Sechium edule HOM05D006531 ORTHO05D007905 2.9e-72 276.9 393 40.5
Gohir.A11G181766 Gossypium hirsutum HOM05D006531 ORTHO05D007905 2.5e-71 273.9 394 42.9
Peaxi162Scf00010g00816 Petunia axillaris HOM05D006531 ORTHO05D007905 1.8e-69 267.7 547 34.2
Manes.02G098000 Manihot esculenta HOM05D006531 ORTHO05D007905 1.3e-67 261.5 411 38.9
SGA_v2.0_scaffold12G06335 Striga asiatica HOM05D006531 ORTHO05D007905 3.8e-64 250.0 366 41.0
MBI16_g36847_MAGBIO Magnolia biondii HOM05D006531 ORTHO05D007905 9.5e-63 245.4 443 37.0
Carub.0006s2991 Capsella rubella HOM05D006531 ORTHO05D007905 3.6e-62 243.4 361 44.6
Hma1.2p1_3019F.1_g331750 Hydrangea macrophylla HOM05D006531 ORTHO05D007905 3.0e-61 240.4 348 44.3
Phvul.003G257166 Phaseolus vulgaris HOM05D006531 ORTHO05D007905 1.7e-56 224.6 211 53.1
Zm00001eb209020 Zea mays HOM05D006531 ORTHO05D007905 1.8e-53 214.5 443 33.9
Phvul.003G257232 Phaseolus vulgaris HOM05D006531 ORTHO05D007905 8.9e-45 185.7 214 43.5
Mapoly0011s0081 Marchantia polymorpha HOM05D006531 ORTHO05D007905 7.5e-44 182.6 506 27.9
MBI14_g29302_MAGBIO Magnolia biondii HOM05D006531 ORTHO05D007905 9.5e-39 165.6 191 46.1
Nn5g29702 Nelumbo nucifera HOM05D006531 ORTHO05D007905 1.1e-31 142.1 160 46.2
CSS0007477 Camellia sinensis var. sinensis HOM05D006531 ORTHO05D007905 1.6e-30 138.3 134 53.0
AagrBONN_evm.TU.Sc2ySwM_368.1148 Anthoceros agrestis HOM05D006531 ORTHO05D007905 1.3e-27 128.6 408 25.2
Zm00001eb231290 Zea mays HOM05D006531 ORTHO05D007905 6.6e-24 116.3 384 25.3
Pp3c2_6980 Physcomitrium patens HOM05D006531 ORTHO05D007905 4.3e-23 113.6 284 30.3
TAR376G0395 Trochodendron aralioides HOM05D006531 ORTHO05D007905 3.6e-22 110.5 105 52.4
Lj2g0008134 Lotus japonicus HOM05D006531 ORTHO05D007905 6.9e-21 106.3 152 44.1
TAR376G0004 Trochodendron aralioides HOM05D006531 ORTHO05D007905 7.6e-20 102.8 163 39.9
vmacro23089 Vaccinium macrocarpon HOM05D006531 ORTHO05D007905 1.4e-18 98.6 134 45.5
SEGI_05601 Sequoiadendron giganteum HOM05D006531 ORTHO05D007905 1.8e-13 81.6 322 23.0
Sc07g0000850 Simmondsia chinensis HOM05D006531 ORTHO05D007905 3.8e-11 73.9 87 46.0
CDE06G1394 Ceratophyllum demersum HOM05D006531 ORTHO05D007905 1.1e-10 72.4 81 45.7
RcHm_v2.0_Chr4g0390451 Rosa chinensis HOM05D006531 ORTHO05D007905 2.8e-06 57.8 43 58.1


User provided reference genes

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