Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31013 Brassica carinata HOM05D005888 ORTHO05D007791 5.5e-164 580.9 289 100.0
BcaC06g33851 Brassica carinata HOM05D005888 ORTHO05D007791 3.0e-141 505.4 288 89.2
A06p41440 Brassica napus HOM05D005888 ORTHO05D007791 2.5e-124 449.1 235 97.4
BolC7t44136H Brassica oleracea HOM05D005888 ORTHO05D007791 2.5e-124 449.1 235 97.4
C07p36200 Brassica napus HOM05D005888 ORTHO05D007791 7.3e-124 447.6 239 95.8
BraA06t27070Z Brassica rapa HOM05D005888 ORTHO05D007791 4.7e-123 444.9 235 96.2
AL5G16294 Arabidopsis lyrata HOM05D005888 ORTHO05D007791 1.2e-121 440.3 230 93.9
Thhalv10003965m.g Eutrema salsugineum HOM05D005888 ORTHO05D007791 2.6e-121 439.1 230 93.9
Carub.0005s0545 Capsella rubella HOM05D005888 ORTHO05D007791 4.4e-121 438.3 230 93.9
CARHR148380 Cardamine hirsuta HOM05D005888 ORTHO05D007791 4.4e-121 438.3 229 94.8
AT3G27180 Arabidopsis thaliana HOM05D005888 ORTHO05D007791 2.2e-120 436.0 230 93.9
Sp2g16300 Schrenkiella parvula HOM05D005888 ORTHO05D007791 6.4e-120 434.5 229 94.8
Aa31LG2G5450 Aethionema arabicum HOM05D005888 ORTHO05D007791 2.1e-102 376.3 226 84.1
THA.LOC104823976 Tarenaya hassleriana HOM05D005888 ORTHO05D007791 2.5e-95 352.8 226 78.3
RcHm_v2.0_Chr2g0175381 Rosa chinensis HOM05D005888 ORTHO05D007791 1.2e-86 323.9 226 70.8
FvH4_6g53250 Fragaria vesca HOM05D005888 ORTHO05D007791 3.6e-86 322.4 226 69.5
MD09G1012500 Malus domestica HOM05D005888 ORTHO05D007791 8.8e-85 317.8 225 68.0
Prupe.3G304500 Prunus persica HOM05D005888 ORTHO05D007791 1.1e-84 317.4 226 69.9
TWI36G1634 Tripterygium wilfordii HOM05D005888 ORTHO05D007791 2.5e-84 316.2 225 70.7
Manes.15G159600 Manihot esculenta HOM05D005888 ORTHO05D007791 5.7e-84 315.1 226 69.5
Ciclev10014957m.g Citrus clementina HOM05D005888 ORTHO05D007791 2.2e-83 313.2 227 68.3
CiPaw.03G054300 Carya illinoinensis HOM05D005888 ORTHO05D007791 2.8e-83 312.8 229 68.1
Dinv33348 Davidia involucrata HOM05D005888 ORTHO05D007791 2.4e-82 309.7 226 67.7
Potri.001G331900 Populus trichocarpa HOM05D005888 ORTHO05D007791 2.4e-82 309.7 226 67.7
Eucgr.J02331 Eucalyptus grandis HOM05D005888 ORTHO05D007791 5.3e-82 308.5 223 68.2
QL02p071659 Quercus lobata HOM05D005888 ORTHO05D007791 9.1e-82 307.8 225 68.4
TAR374G0091 Trochodendron aralioides HOM05D005888 ORTHO05D007791 9.1e-82 307.8 227 69.2
GSVIVG01033109001 Vitis vinifera HOM05D005888 ORTHO05D007791 9.1e-82 307.8 226 69.5
Lalb_Chr22g0360441 Lupinus albus HOM05D005888 ORTHO05D007791 1.2e-81 307.4 226 68.1
Nn4g22357 Nelumbo nucifera HOM05D005888 ORTHO05D007791 1.2e-81 307.4 226 67.3
Phvul.001G094800 Phaseolus vulgaris HOM05D005888 ORTHO05D007791 2.0e-81 306.6 226 67.7
CANSAT64G1138 Cannabis sativa HOM05D005888 ORTHO05D007791 4.5e-81 305.4 223 66.8
Thecc.04G034400 Theobroma cacao HOM05D005888 ORTHO05D007791 5.9e-81 305.1 229 66.4
FAN05G4989 Fragaria x ananassa HOM05D005888 ORTHO05D007791 7.7e-81 304.7 247 64.0
Duzib187G0894 Durio zibethinus HOM05D005888 ORTHO05D007791 1.0e-80 304.3 229 65.9
MELO3C014874.2 Cucumis melo HOM05D005888 ORTHO05D007791 1.3e-80 303.9 221 67.0
CsaV3_3G027150 Cucumis sativus L. HOM05D005888 ORTHO05D007791 1.3e-80 303.9 221 67.0
Peaxi162Scf00700g00115 Petunia axillaris HOM05D005888 ORTHO05D007791 2.2e-80 303.1 226 67.7
Gorai.011G091800 Gossypium raimondii HOM05D005888 ORTHO05D007791 3.8e-80 302.4 229 64.6
Glyma.16G057700 Glycine max HOM05D005888 ORTHO05D007791 1.1e-79 300.8 225 67.1
Actinidia36191 Actinidia chinensis HOM05D005888 ORTHO05D007791 1.9e-79 300.1 211 69.7
arahy.Tifrunner.gnm1.ann1.BEVL6N Arachis hypogaea HOM05D005888 ORTHO05D007791 1.9e-79 300.1 228 67.5
Atru.chr6.2546 Acer truncatum HOM05D005888 ORTHO05D007791 2.5e-79 299.7 222 66.7
Atru.chr6.2554 Acer truncatum HOM05D005888 ORTHO05D007791 2.5e-79 299.7 222 66.7
HanXRQChr14g0450691 Helianthus annuus HOM05D005888 ORTHO05D007791 3.2e-79 299.3 226 66.8
Gohir.A10G159400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 4.2e-79 298.9 229 64.6
Lj1g0026523 Lotus japonicus HOM05D005888 ORTHO05D007791 9.4e-79 297.7 225 66.2
Actinidia05914 Actinidia chinensis HOM05D005888 ORTHO05D007791 1.2e-78 297.4 219 67.1
CAN.G1751.4 Capsicum annuum HOM05D005888 ORTHO05D007791 1.2e-78 297.4 226 65.5
FAN02G1540 Fragaria x ananassa HOM05D005888 ORTHO05D007791 1.2e-78 297.4 240 62.5
Medtr7g029350 Medicago truncatula HOM05D005888 ORTHO05D007791 1.2e-78 297.4 227 67.0
Sed0023439 Sechium edule HOM05D005888 ORTHO05D007791 1.2e-78 297.4 212 67.9
arahy.Tifrunner.gnm1.ann1.269ICV Arachis hypogaea HOM05D005888 ORTHO05D007791 1.6e-78 297.0 228 67.1
Nitab4.5_0005161g0030 Nicotiana tabacum HOM05D005888 ORTHO05D007791 2.1e-78 296.6 226 64.6
Psat3g164600 Pisum sativum HOM05D005888 ORTHO05D007791 2.1e-78 296.6 227 65.6
Nitab4.5_0000559g0440 Nicotiana tabacum HOM05D005888 ORTHO05D007791 3.6e-78 295.8 226 64.2
Ah.11g046710 Amaranthus hybridus HOM05D005888 ORTHO05D007791 4.7e-78 295.4 226 63.7
Sc03g0006610 Simmondsia chinensis HOM05D005888 ORTHO05D007791 4.7e-78 295.4 226 63.7
Solyc03g005010.4 Solanum lycopersicum HOM05D005888 ORTHO05D007791 7.9e-78 294.7 226 65.0
Sopen03g001020 Solanum pennellii HOM05D005888 ORTHO05D007791 7.9e-78 294.7 226 65.0
PGR083G0577 Punica granatum HOM05D005888 ORTHO05D007791 1.4e-77 293.9 229 65.1
PSO063G1934 Papaver somniferum HOM05D005888 ORTHO05D007791 2.3e-77 293.1 211 66.4
PSO782G2046 Papaver somniferum HOM05D005888 ORTHO05D007791 2.3e-77 293.1 220 65.0
ECA238G1812 Erigeron canadensis HOM05D005888 ORTHO05D001226 6.7e-77 291.6 214 65.9
Aqoxy5G03414 Aquilegia oxysepala HOM05D005888 ORTHO05D007791 8.8e-77 291.2 226 64.2
TPR.G38314 Trifolium pratense HOM05D005888 ORTHO05D007791 2.6e-76 289.7 225 64.9
ClCG05G013410 Citrullus lanatus HOM05D005888 ORTHO05D007791 4.4e-76 288.9 228 64.5
Gohir.D10G084400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 4.4e-76 288.9 229 63.3
VMungo1383G0859 Vigna mungo HOM05D005888 ORTHO05D007791 7.4e-76 288.1 258 60.1
Cpa.g.sc171.27 Carica papaya HOM05D005888 ORTHO05D007791 9.7e-76 287.7 225 68.0
AUR62034780 Chenopodium quinoa HOM05D005888 ORTHO05D007791 1.3e-75 287.3 231 60.6
Hma1.2p1_0279F.1_g112640 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 2.2e-75 286.6 200 69.5
Hma1.2p1_0279F.1_g112650 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 2.2e-75 286.6 200 69.5
Lju41C52T2 Lonicera japonica HOM05D005888 ORTHO05D007791 2.2e-75 286.6 200 69.0
MSTRG.15566 Avicennia marina HOM05D005888 ORTHO05D007791 4.8e-75 285.4 225 64.0
DCAR_021782 Daucus carota HOM05D005888 ORTHO05D007791 1.1e-74 284.3 200 66.5
Migut.K01458 Erythranthe guttata HOM05D005888 ORTHO05D007791 3.1e-74 282.7 227 66.1
ATR0561G016 Amborella trichopoda HOM05D005888 ORTHO05D007791 7.0e-74 281.6 234 60.3
SalBow7G4553 Salvia bowleyana HOM05D005888 ORTHO05D007791 9.1e-74 281.2 226 64.2
FAN14G3555 Fragaria x ananassa HOM05D005888 ORTHO05D007791 7.7e-73 278.1 226 62.4
Rhsim10G0007200 Rhododendron simsii HOM05D005888 ORTHO05D007791 1.0e-72 277.7 239 60.3
vmacro05950 Vaccinium macrocarpon HOM05D005888 ORTHO05D007791 1.0e-72 277.7 211 64.0
Zm00001eb364480 Zea mays HOM05D005888 ORTHO05D007791 1.7e-72 276.9 226 58.8
Lsat_1_v5_gn_2_94140 Lactuca sativa HOM05D005888 ORTHO05D007791 2.9e-72 276.2 211 64.5
FAN05G3931 Fragaria x ananassa HOM05D005888 ORTHO05D007791 6.5e-72 275.0 232 61.6
PGSC0003DMG400013424 Solanum tuberosum HOM05D005888 ORTHO05D007791 2.5e-71 273.1 200 65.5
AUR62009505 Chenopodium quinoa HOM05D005888 ORTHO05D007791 4.2e-71 272.3 202 63.4
Haze_14860 Corylus avellana HOM05D005888 ORTHO05D007791 7.2e-71 271.6 228 61.8
Os01g0920300 Oryza sativa ssp. japonica HOM05D005888 ORTHO05D007791 2.7e-70 269.6 220 58.6
Sabra16G0212900 Salix brachista HOM05D005888 ORTHO05D007791 1.0e-69 267.7 240 59.2
Cc07_g00720 Coffea canephora HOM05D005888 ORTHO05D007791 5.2e-69 265.4 227 57.7
EL10Ac5g11325 Beta vulgaris HOM05D005888 ORTHO05D007791 7.4e-68 261.5 200 62.0
Cfa007240 Carpinus fangiana HOM05D005888 ORTHO05D007791 5.9e-65 251.9 186 66.7
HPP92_006968 Vanilla planifolia HOM05D005888 ORTHO05D007791 8.5e-64 248.1 202 61.4
CDE05G3258 Ceratophyllum demersum HOM05D005888 ORTHO05D007791 4.0e-61 239.2 232 53.9
COL.COLO4_17186 Corchorus olitorius HOM05D005888 ORTHO05D007791 8.8e-61 238.0 205 59.5
Oeu011755.2 Olea europaea HOM05D005888 ORTHO05D007791 9.7e-60 234.6 228 55.7
SMO364G0044 Selaginella moellendorffii HOM05D005888 ORTHO05D007791 1.8e-58 230.3 221 49.8
Mapoly0035s0136 Marchantia polymorpha HOM05D005888 ORTHO05D007791 4.1e-58 229.2 231 50.2
Pp3c10_19430 Physcomitrium patens HOM05D005888 ORTHO05D007791 3.8e-56 222.6 237 49.8
SGA_v2.0_scaffold47G17585 Striga asiatica HOM05D005888 ORTHO05D000781 4.7e-54 215.7 174 62.6
Ca_11801_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 8.0e-54 214.9 179 62.6
AUR62044347 Chenopodium quinoa HOM05D005888 ORTHO05D007791 7.3e-39 165.2 203 46.3
CBR_g38076 Chara braunii HOM05D005888 ORTHO05D007791 1.2e-33 147.9 178 43.3
Atru.chr6.2543 Acer truncatum HOM05D005888 ORTHO05D007791 2.0e-28 130.6 87 70.1
AagrBONN_evm.TU.Sc2ySwM_344.2002 Anthoceros agrestis HOM05D005888 ORTHO05D007791 3.4e-28 129.8 110 53.6
RcHm_v2.0_Chr7g0179331 Rosa chinensis HOM05D005888 ORTHO05D007791 1.5e-23 114.4 78 69.2
MCO16G034 Micromonas commoda HOM05D005888 ORTHO05D007791 1.2e-22 111.3 247 32.0
GSVIVG01006690001 Vitis vinifera HOM05D005888 ORTHO05D007791 2.7e-17 93.6 78 62.8
GSVIVG01033112001 Vitis vinifera HOM05D005888 ORTHO05D007791 3.9e-16 89.7 65 60.0
PRCOL_00001844 Prasinoderma coloniale HOM05D005888 ORTHO05D007791 7.6e-12 75.5 213 29.6
Cre13.g578012 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 4.2e-10 69.7 324 22.8
GSVIVG01033118001 Vitis vinifera HOM05D005888 ORTHO05D007791 5.4e-10 69.3 77 48.1


User provided reference genes

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