Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 2122.8 1085 100.0
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 2037.3 1103 94.7
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 2037.3 1103 94.7
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 2035.0 1095 94.8
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 2034.2 1099 94.6
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 2026.1 1104 93.9
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 0.0e+00 1948.7 1095 90.9
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 0.0e+00 1923.3 1095 89.0
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 0.0e+00 1916.7 1095 89.1
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 0.0e+00 1878.2 1095 87.9
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 0.0e+00 1872.8 1096 88.1
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1862.0 1095 87.1
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1862.0 1081 88.3
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1855.1 1083 87.8
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1842.4 1102 85.8
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 0.0e+00 1834.3 1095 85.8
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 0.0e+00 1773.8 1118 82.1
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 0.0e+00 1667.9 1110 76.1
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 0.0e+00 1364.7 1116 64.2
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 0.0e+00 1359.0 1113 63.2
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 0.0e+00 1358.2 1122 63.6
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1357.4 1114 64.2
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 0.0e+00 1340.5 1127 63.5
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 0.0e+00 1337.0 1076 64.9
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 0.0e+00 1333.2 1105 63.7
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 0.0e+00 1331.2 1113 62.8
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 0.0e+00 1331.2 1106 62.8
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 0.0e+00 1323.9 1112 62.5
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1323.9 1098 63.4
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 0.0e+00 1323.5 1126 62.3
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 1322.4 1101 63.4
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 0.0e+00 1319.3 1117 63.3
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1318.9 1098 63.3
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 0.0e+00 1312.0 1172 59.1
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 0.0e+00 1309.3 1126 62.4
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 0.0e+00 1301.2 1108 61.4
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 0.0e+00 1300.0 1055 64.8
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1287.7 1117 60.9
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1285.8 1116 60.3
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 0.0e+00 1284.2 1112 61.1
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1282.7 1112 59.6
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1279.6 1111 60.6
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1275.4 1108 60.9
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 0.0e+00 1274.6 1111 59.6
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1273.1 1114 60.3
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 0.0e+00 1271.1 1114 60.9
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1270.0 1111 59.4
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1269.2 1111 59.5
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1268.8 1120 58.8
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 0.0e+00 1265.4 1173 58.6
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 0.0e+00 1265.0 1115 59.6
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 0.0e+00 1264.2 1126 58.7
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 0.0e+00 1263.4 1109 59.2
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1263.1 1114 60.2
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 0.0e+00 1259.6 1115 60.0
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 0.0e+00 1259.2 1107 60.0
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1258.8 1078 61.1
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 0.0e+00 1258.8 1107 60.1
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 0.0e+00 1255.7 1094 60.3
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1255.4 1095 60.5
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 0.0e+00 1255.0 1116 58.8
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 0.0e+00 1253.4 1077 60.0
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1253.0 1111 59.0
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 0.0e+00 1251.1 1085 60.1
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 0.0e+00 1251.1 1146 59.2
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 0.0e+00 1247.6 1126 60.4
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1246.1 1094 60.1
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1244.2 1107 59.1
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 0.0e+00 1243.4 1112 59.0
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1240.7 1085 60.4
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1238.8 1106 58.6
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1235.3 1072 59.8
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1232.6 1100 58.2
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 0.0e+00 1223.0 1115 58.1
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1221.1 1127 56.5
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1221.1 1127 56.4
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 0.0e+00 1217.6 1078 59.6
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 0.0e+00 1217.6 1119 57.8
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 0.0e+00 1215.7 1083 60.5
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 0.0e+00 1213.0 1108 59.0
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 0.0e+00 1208.0 1137 58.4
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 0.0e+00 1197.6 1121 56.6
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 0.0e+00 1197.6 1114 56.3
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1185.6 913 66.9
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1184.5 1117 56.0
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 0.0e+00 1183.7 1095 57.3
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 0.0e+00 1177.2 1102 57.3
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1176.0 1134 55.1
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 0.0e+00 1168.3 1196 53.8
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1161.0 1146 53.8
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 0.0e+00 1157.1 1099 56.0
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 0.0e+00 1153.7 959 63.2
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 0.0e+00 1152.9 997 63.0
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 0.0e+00 1146.3 1005 60.6
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 0.0e+00 1126.3 1093 54.4
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 0.0e+00 1111.7 950 61.9
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1096.3 940 62.7
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 0.0e+00 1088.2 840 64.6
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1081.2 1186 50.8
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 0.0e+00 1079.3 1144 52.1
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1077.0 1000 56.4
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 7.4e-312 1073.5 959 58.7
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 3.0e-311 1072.0 793 69.0
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 2.1e-309 1065.8 1095 53.3
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 2.3e-295 1019.2 1093 51.9
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 3.7e-293 1011.9 728 69.1
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 5.0e-282 974.9 894 58.2
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 1.3e-277 960.3 1110 48.8
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 1.0e-266 924.1 1006 51.5
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 3.0e-263 912.5 1100 46.6
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 3.2e-257 892.5 640 70.3
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 3.5e-251 872.5 1001 48.2
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 2.1e-248 863.2 1115 45.1
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 2.2e-237 826.6 798 55.0
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 1.8e-236 823.5 1071 43.8
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 2.6e-222 776.5 814 51.0
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 6.4e-189 665.6 956 42.3
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 1.1e-167 595.1 1082 37.7
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 1.6e-147 528.1 446 59.6
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 1.4e-146 525.0 1103 35.2
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 3.9e-146 523.5 411 65.2
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 5.2e-138 496.5 538 51.9
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 2.5e-116 424.5 334 61.7
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 2.4e-103 381.3 1177 27.7
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 1.1e-100 372.5 324 58.0
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 7.5e-97 359.8 280 75.0
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 9.9e-97 359.4 280 74.6
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 2.3e-93 348.2 280 74.3
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 3.0e-77 294.7 504 37.9
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 2.8e-75 288.1 237 62.9
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.6e-62 245.7 261 52.9
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 3.0e-61 241.5 353 42.2
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.8e-59 235.0 252 54.0
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 3.5e-54 218.0 209 57.4
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.1e-52 213.0 223 53.8
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 1.6e-46 192.6 361 37.1
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 3.6e-46 191.4 223 47.1
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 3.6e-46 191.4 223 47.1
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 3.6e-46 191.4 223 47.1
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 3.0e-45 188.3 223 46.6
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.9e-44 185.7 223 46.2
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 2.5e-44 185.3 230 49.6
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.5e-41 176.0 264 42.4
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 9.7e-36 156.8 1030 23.1
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.8e-35 155.2 223 41.7
Nn7g36110 Nelumbo nucifera HOM05D004846 ORTHO05D005630 1.9e-31 142.5 143 52.4
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 7.2e-31 140.6 429 29.4
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 6.1e-30 137.5 196 43.4
SEGI_31417 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 2.7e-22 112.1 97 62.9
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 2.3e-21 109.0 240 32.5
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 2.6e-20 105.5 300 29.7
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 4.8e-19 101.3 79 60.8
Eucgr.J00244 Eucalyptus grandis HOM05D004846 ORTHO05D005630 7.7e-17 94.0 126 44.4
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 1.5e-15 89.7 58 63.8
Dinv00598 Davidia involucrata HOM05D004846 ORTHO05D005630 4.7e-14 84.7 76 55.3
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 5.7e-12 77.8 99 45.5
Ca_14625_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 9.1e-10 70.5 72 48.6


User provided reference genes

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