Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g30982 Brassica carinata HOM05D005478 ORTHO05D006426 1.4e-93 346.3 180 100.0
BcaC06g33809 Brassica carinata HOM05D005478 ORTHO05D006426 3.4e-71 271.9 183 83.1
BolC7t44179H Brassica oleracea HOM05D005478 ORTHO05D006426 5.9e-71 271.2 183 82.5
A06p41110 Brassica napus HOM05D005478 ORTHO05D006426 1.3e-70 270.0 181 82.9
BraA06t27034Z Brassica rapa HOM05D005478 ORTHO05D006426 1.3e-70 270.0 181 82.9
C07p36630 Brassica napus HOM05D005478 ORTHO05D006426 1.1e-69 266.9 183 82.0
Sp2g16690 Schrenkiella parvula HOM05D005478 ORTHO05D006426 3.1e-64 248.8 185 73.0
AT3G27520 Arabidopsis thaliana HOM05D005478 ORTHO05D006426 7.2e-53 211.1 191 60.7
A09p03440 Brassica napus HOM05D005478 ORTHO05D006426 1.2e-52 210.3 178 66.3
BraA09t35982Z Brassica rapa HOM05D005478 ORTHO05D006426 2.7e-52 209.1 178 65.7
AL5G16940 Arabidopsis lyrata HOM05D005478 ORTHO05D006426 6.1e-52 208.0 191 61.3
BcaB04g19441 Brassica carinata HOM05D005478 ORTHO05D006426 3.0e-51 205.7 183 66.1
Carub.0005s0595 Capsella rubella HOM05D005478 ORTHO05D006426 1.5e-50 203.4 192 59.4
Thhalv10004961m.g Eutrema salsugineum HOM05D005478 ORTHO05D006426 9.7e-50 200.7 188 62.2
Aa31LG2G5140 Aethionema arabicum HOM05D005478 ORTHO05D006426 7.0e-48 194.5 196 57.7
CARHR148890 Cardamine hirsuta HOM05D005478 ORTHO05D006426 1.5e-45 186.8 174 58.6
THA.LOC104825319 Tarenaya hassleriana HOM05D005478 ORTHO05D006426 3.2e-45 185.7 179 57.0
BcaC04g23900 Brassica carinata HOM05D005478 ORTHO05D006426 1.6e-44 183.3 177 60.5
C09p03650 Brassica napus HOM05D005478 ORTHO05D006426 1.6e-44 183.3 177 60.5
BolC9t53284H Brassica oleracea HOM05D005478 ORTHO05D006426 3.6e-44 182.2 177 60.5
Thhalv10027961m.g Eutrema salsugineum HOM05D005478 ORTHO05D006426 2.9e-38 162.5 176 52.8
QL02p074001 Quercus lobata HOM05D005478 ORTHO05D006426 7.0e-32 141.4 177 48.0
Cpa.g.sc108.77 Carica papaya HOM05D005478 ORTHO05D006426 2.0e-31 139.8 183 47.0
Duzib160G0719 Durio zibethinus HOM05D005478 ORTHO05D006426 5.9e-31 138.3 180 43.3
GSVIVG01032384001 Vitis vinifera HOM05D005478 ORTHO05D006426 1.3e-30 137.1 179 47.5
COL.COLO4_30424 Corchorus olitorius HOM05D005478 ORTHO05D006426 1.7e-30 136.7 185 44.9
TWI56G0849 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 2.3e-30 136.3 179 44.7
Duzib235G1061 Durio zibethinus HOM05D005478 ORTHO05D006426 5.0e-30 135.2 180 46.1
Hma1.2p1_0818F.1_g223270 Hydrangea macrophylla HOM05D005478 ORTHO05D006426 6.5e-30 134.8 184 47.3
CiPaw.04G029700 Carya illinoinensis HOM05D005478 ORTHO05D006426 8.6e-30 134.4 185 46.5
Prupe.3G293900 Prunus persica HOM05D005478 ORTHO05D006426 7.2e-29 131.3 184 43.5
CiPaw.03G045600 Carya illinoinensis HOM05D005478 ORTHO05D006426 1.2e-28 130.6 182 46.2
THA.LOC104825211 Tarenaya hassleriana HOM05D005478 ORTHO05D006426 4.7e-28 128.6 135 57.0
TWI36G1604 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 4.7e-28 128.6 180 42.8
MSTRG.15534 Avicennia marina HOM05D005478 ORTHO05D006426 6.1e-28 128.3 176 46.6
Lalb_Chr22g0360721 Lupinus albus HOM05D005478 ORTHO05D006426 8.0e-28 127.9 180 47.8
Actinidia36124 Actinidia chinensis HOM05D005478 ORTHO05D006426 1.0e-27 127.5 187 45.5
VMungo0464G1533 Vigna mungo HOM05D005478 ORTHO05D006426 3.4e-26 122.5 180 42.2
Manes.17G111100 Manihot esculenta HOM05D005478 ORTHO05D006426 7.5e-26 121.3 184 43.5
TWI12G0237 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 9.8e-26 120.9 180 42.8
Actinidia18441 Actinidia chinensis HOM05D005478 ORTHO05D006426 3.7e-25 119.0 178 43.3
Ciclev10016916m.g Citrus clementina HOM05D005478 ORTHO05D006426 4.9e-25 118.6 180 41.7
Sabra16G0222600 Salix brachista HOM05D005478 ORTHO05D006426 8.3e-25 117.9 177 42.4
Cfa007338 Carpinus fangiana HOM05D005478 ORTHO05D006426 1.1e-24 117.5 184 41.3
MSTRG.3284 Avicennia marina HOM05D005478 ORTHO05D006426 2.4e-24 116.3 175 43.4
CANSAT64G0255 Cannabis sativa HOM05D005478 ORTHO05D006426 2.4e-24 116.3 181 40.9
Duzib192G0894 Durio zibethinus HOM05D005478 ORTHO05D006426 2.4e-24 116.3 179 41.3
Potri.001G343200 Populus trichocarpa HOM05D005478 ORTHO05D006426 4.1e-24 115.5 177 41.8
Gohir.A09G082300 Gossypium hirsutum HOM05D005478 ORTHO05D006426 5.4e-24 115.2 180 37.8
Medtr6g004420 Medicago truncatula HOM05D005478 ORTHO05D006426 9.2e-24 114.4 179 40.2
Thecc.06G091700 Theobroma cacao HOM05D005478 ORTHO05D006426 1.6e-23 113.6 183 38.3
MELO3C026588.2 Cucumis melo HOM05D005478 ORTHO05D006426 2.0e-23 113.2 184 37.0
Ca_04142_v3 Cicer arietinum L. HOM05D005478 ORTHO05D006426 2.7e-23 112.8 177 40.1
Rhsim10G0014600 Rhododendron simsii HOM05D005478 ORTHO05D006426 2.7e-23 112.8 177 42.4
Haze_14759 Corylus avellana HOM05D005478 ORTHO05D006426 3.5e-23 112.5 188 40.4
Sed0022021 Sechium edule HOM05D005478 ORTHO05D006426 3.5e-23 112.5 178 39.9
ClCG10G013780 Citrullus lanatus HOM05D005478 ORTHO05D006426 4.5e-23 112.1 181 40.3
CsaV3_3G042880 Cucumis sativus L. HOM05D005478 ORTHO05D006426 7.8e-23 111.3 185 38.9
Gohir.D09G082100 Gossypium hirsutum HOM05D005478 ORTHO05D006426 7.8e-23 111.3 180 38.3
Gorai.006G097900 Gossypium raimondii HOM05D005478 ORTHO05D006426 1.0e-22 110.9 177 38.4
Sc07g0003180 Simmondsia chinensis HOM05D005478 ORTHO05D006426 1.0e-22 110.9 178 43.3
Migut.K01412 Erythranthe guttata HOM05D005478 ORTHO05D006426 1.3e-22 110.5 179 41.3
DCAR_011260 Daucus carota HOM05D005478 ORTHO05D006426 1.7e-22 110.2 179 41.9
Lsat_1_v5_gn_0_18280 Lactuca sativa HOM05D005478 ORTHO05D006426 1.7e-22 110.2 177 41.8
PGR142G0633 Punica granatum HOM05D005478 ORTHO05D006426 1.7e-22 110.2 186 38.2
Glyma.05G002400 Glycine max HOM05D005478 ORTHO05D006426 5.0e-22 108.6 173 42.8
MD09G1022900 Malus domestica HOM05D005478 ORTHO05D006426 5.0e-22 108.6 185 38.4
AUR62041940 Chenopodium quinoa HOM05D005478 ORTHO05D006426 8.6e-22 107.8 182 40.1
Atru.chr6.2431 Acer truncatum HOM05D005478 ORTHO05D006426 1.5e-21 107.1 180 40.0
AUR62028419 Chenopodium quinoa HOM05D005478 ORTHO05D006426 1.9e-21 106.7 182 39.6
SGA_v2.0_scaffold47G17517 Striga asiatica HOM05D005478 ORTHO05D006426 1.9e-21 106.7 183 39.9
FAN05G2721 Fragaria x ananassa HOM05D005478 ORTHO05D006426 5.6e-21 105.1 184 41.3
Actinidia05981 Actinidia chinensis HOM05D005478 ORTHO05D006426 7.3e-21 104.8 176 41.5
unitig_88.g27693 Utricularia gibba HOM05D000631 ORTHO05D000524 9.5e-21 104.4 180 35.6
FAN02G1690 Fragaria x ananassa HOM05D005478 ORTHO05D006426 1.2e-20 104.0 181 40.3
Hund15527 Selenicereus undatus HOM05D005478 ORTHO05D006426 2.1e-20 103.2 177 38.4
Oeu033728.1 Olea europaea HOM05D005478 ORTHO05D006426 3.6e-20 102.4 177 40.1
TAR371G0105 Trochodendron aralioides HOM05D005478 ORTHO05D006426 3.6e-20 102.4 181 38.7
arahy.Tifrunner.gnm1.ann1.47572L Arachis hypogaea HOM05D005478 ORTHO05D006426 6.1e-20 101.7 182 39.0
TPR.G31952 Trifolium pratense HOM05D005478 ORTHO05D006426 1.0e-19 100.9 183 40.4
Lalb_Chr24g0403571 Lupinus albus HOM05D005478 ORTHO05D006426 1.8e-19 100.1 184 39.1
FvH4_6g51790 Fragaria vesca HOM05D005478 ORTHO05D006426 2.3e-19 99.8 182 39.0
Eucgr.I01730 Eucalyptus grandis HOM05D005478 ORTHO05D006426 6.8e-19 98.2 181 37.0
FAN14G4849 Fragaria x ananassa HOM05D005478 ORTHO05D006426 8.9e-19 97.8 182 38.5
TAR629G3442 Trochodendron aralioides HOM05D005478 ORTHO05D006426 8.9e-19 97.8 173 35.8
ATR0824G160 Amborella trichopoda HOM05D005478 ORTHO05D006426 1.2e-18 97.4 179 33.5
RcHm_v2.0_Chr2g0173291 Rosa chinensis HOM05D005478 ORTHO05D006426 1.5e-18 97.1 137 43.8
FAN09G1593 Fragaria x ananassa HOM05D005478 ORTHO05D006426 2.0e-18 96.7 182 38.5
Psat1g053440 Pisum sativum HOM05D005478 ORTHO05D006426 2.0e-18 96.7 178 39.9
Sopen02g038220 Solanum pennellii HOM05D005478 ORTHO05D006426 3.4e-18 95.9 179 37.4
PGSC0003DMG400012636 Solanum tuberosum HOM05D005478 ORTHO05D006426 3.4e-18 95.9 179 35.8
Solyc02g093450.3 Solanum lycopersicum HOM05D005478 ORTHO05D006426 5.7e-18 95.1 179 37.4
Phvul.004G004600 Phaseolus vulgaris HOM05D005478 ORTHO05D006426 7.5e-18 94.7 182 35.2
Glyma.19G002600 Glycine max HOM05D005478 ORTHO05D006426 9.8e-18 94.4 174 37.4
Peaxi162Scf00700g00430 Petunia axillaris HOM05D005478 ORTHO05D006426 2.2e-17 93.2 163 37.4
vmacro05877 Vaccinium macrocarpon HOM05D005478 ORTHO05D006426 3.7e-17 92.4 212 34.0
CSS0007505 Camellia sinensis var. sinensis HOM05D005478 ORTHO05D006426 4.9e-17 92.0 179 36.9
CDE09G0806 Ceratophyllum demersum HOM05D005478 ORTHO05D006426 6.4e-17 91.7 177 33.9
CDE02G4674 Ceratophyllum demersum HOM05D005478 ORTHO05D006426 8.3e-17 91.3 180 33.3
MD17G1022200 Malus domestica HOM05D005478 ORTHO05D006426 1.8e-16 90.1 184 34.2
HPP92_006182 Vanilla planifolia HOM05D005478 ORTHO05D006426 5.4e-16 88.6 179 36.3
arahy.Tifrunner.gnm1.ann1.WAXE9D Arachis hypogaea HOM05D005478 ORTHO05D006426 7.0e-16 88.2 208 35.1
Lj2g0025845 Lotus japonicus HOM05D005478 ORTHO05D006426 2.7e-15 86.3 174 35.1
Aqoxy5G03740 Aquilegia oxysepala HOM05D005478 ORTHO05D006426 2.3e-14 83.2 180 32.2
PSO478G1356 Papaver somniferum HOM05D005478 ORTHO05D006426 2.3e-14 83.2 182 33.5
Oeu048609.1 Olea europaea HOM05D005478 ORTHO05D006426 1.1e-13 80.9 178 36.5
PSO017G4510 Papaver somniferum HOM05D005478 ORTHO05D006426 3.3e-13 79.3 181 32.6
Nn3g16686 Nelumbo nucifera HOM05D005478 ORTHO05D006426 9.5e-13 77.8 173 32.9
HanXRQChr07g0199031 Helianthus annuus HOM05D005478 ORTHO05D006426 2.1e-12 76.6 182 31.3
HanXRQChr14g0451171 Helianthus annuus HOM05D005478 ORTHO05D006426 8.0e-12 74.7 178 33.1
vmacro18294 Vaccinium macrocarpon HOM05D005478 ORTHO05D006426 2.3e-11 73.2 226 31.0
SGA_v2.0_scaffold30G12408 Striga asiatica HOM05D005478 ORTHO05D006426 8.9e-11 71.2 183 32.2
Lsat_1_v5_gn_2_91160 Lactuca sativa HOM05D005478 ORTHO05D006426 1.2e-10 70.9 178 32.6
PSO063G0871 Papaver somniferum HOM05D005478 ORTHO05D006426 1.5e-10 70.5 172 30.8
MBI14_g36718_MAGBIO Magnolia biondii HOM05D005478 ORTHO05D006426 7.5e-10 68.2 182 33.5
PSO754G0087 Papaver somniferum HOM05D005478 ORTHO05D006426 1.3e-09 67.4 172 28.5
Ah.02g128220 Amaranthus hybridus HOM05D005478 ORTHO05D006426 2.2e-09 66.6 175 28.6
Aqoxy1G02464 Aquilegia oxysepala HOM05D005478 ORTHO05D006426 6.4e-09 65.1 162 30.2
ECA238G3024 Erigeron canadensis HOM05D005478 ORTHO05D006426 1.4e-08 63.9 181 28.7
SEGI_00200 Sequoiadendron giganteum HOM05D005478 ORTHO05D006426 2.4e-08 63.2 166 29.5
Gohir.D05G130900 Gossypium hirsutum HOM05D005478 ORTHO05D006426 2.0e-07 60.1 108 37.0
Os02g0595300 Oryza sativa ssp. japonica HOM05D005478 ORTHO05D006426 3.9e-06 55.8 178 27.0


User provided reference genes

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