Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 3579.3 1843 100.0
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 3364.7 1842 93.4
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 3363.5 1841 93.9
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 3363.5 1841 93.9
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 0.0e+00 3363.5 1841 93.9
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 0.0e+00 3362.0 1842 93.4
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 0.0e+00 3207.9 1845 89.3
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 0.0e+00 3076.2 1848 85.7
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 0.0e+00 3033.4 1846 84.4
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 0.0e+00 3030.7 1844 84.8
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 0.0e+00 2845.1 1688 87.0
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 0.0e+00 2785.0 1852 78.2
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 0.0e+00 2456.8 1851 69.1
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 0.0e+00 1971.4 1857 56.4
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 0.0e+00 1967.2 1867 56.0
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 0.0e+00 1956.0 1859 56.2
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 0.0e+00 1943.7 1859 56.3
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 0.0e+00 1917.1 1858 55.3
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1904.4 1862 54.9
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 0.0e+00 1898.6 1868 54.7
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 0.0e+00 1897.9 1862 54.2
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 0.0e+00 1888.2 1862 55.2
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 0.0e+00 1880.5 1857 54.4
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 1879.8 1854 54.5
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 0.0e+00 1865.1 1858 54.1
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 1859.7 1856 54.0
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 0.0e+00 1851.6 1943 53.0
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 0.0e+00 1845.5 1857 53.9
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 0.0e+00 1839.3 1858 53.1
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 0.0e+00 1793.9 1857 51.5
Gohir.D09G028100 Gossypium hirsutum HOM05D004010 ORTHO05D004995 0.0e+00 1783.8 1707 55.6
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 0.0e+00 1783.1 1862 51.7
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1770.0 1859 52.3
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 0.0e+00 1758.8 1855 50.5
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 0.0e+00 1758.8 1860 50.8
Glyma.19G004700 Glycine max HOM05D004010 ORTHO05D004995 0.0e+00 1755.7 1862 51.1
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1755.3 1859 52.1
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 0.0e+00 1744.2 1863 51.6
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1742.6 2011 49.5
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 0.0e+00 1741.5 1858 50.2
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1738.0 2050 48.8
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 0.0e+00 1736.9 1867 51.3
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1735.7 1860 51.7
VMungo0464G1595 Vigna mungo HOM05D004010 ORTHO05D004995 0.0e+00 1731.8 1875 50.1
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1727.6 1856 49.8
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 0.0e+00 1712.2 1862 50.6
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 0.0e+00 1699.1 1854 50.0
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 0.0e+00 1697.9 1865 50.5
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 0.0e+00 1692.2 1990 48.8
Phvul.004G009818 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1690.2 1859 49.7
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 0.0e+00 1689.5 1968 48.8
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1685.2 1889 48.6
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 0.0e+00 1675.6 1870 49.9
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 0.0e+00 1667.9 1860 49.5
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 0.0e+00 1660.2 1869 50.1
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 0.0e+00 1660.2 1860 49.2
TAR371G0622 Trochodendron aralioides HOM05D004010 ORTHO05D004995 0.0e+00 1629.0 1698 52.8
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 0.0e+00 1628.2 1869 48.2
PSO478G2834 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1625.1 1872 48.1
PSO017G0470 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1620.1 1874 47.8
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 0.0e+00 1616.3 1867 48.5
Psat1g055320 Pisum sativum HOM05D004010 ORTHO05D004995 0.0e+00 1592.0 1727 49.7
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 0.0e+00 1590.9 1856 47.7
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 0.0e+00 1590.1 1875 47.5
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 0.0e+00 1570.4 1877 46.8
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 0.0e+00 1557.3 1871 47.4
Ciclev10014033m.g Citrus clementina HOM05D004010 ORTHO05D004995 0.0e+00 1543.5 1522 54.0
Duzib187G0443 Durio zibethinus HOM05D004010 ORTHO05D004995 0.0e+00 1536.5 1856 47.6
CARHR149120 Cardamine hirsuta HOM05D004010 ORTHO05D004995 0.0e+00 1507.7 933 84.1
GSVIVG01032418001 Vitis vinifera HOM05D004010 ORTHO05D004995 0.0e+00 1497.3 1860 47.0
CSS0029677 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1490.7 1513 53.3
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 0.0e+00 1466.4 1965 43.7
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 0.0e+00 1454.5 1920 43.8
Sc03g0007550 Simmondsia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1448.7 1650 48.8
CSS0006564 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1446.8 1450 53.5
EL10Ac4g08587 Beta vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1442.2 1856 44.6
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1439.1 1892 44.4
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1407.5 1863 43.7
Peaxi162Scf00129g01535 Petunia axillaris HOM05D004010 ORTHO05D004995 0.0e+00 1357.8 1899 43.1
ATR1158G023 Amborella trichopoda HOM05D004010 ORTHO05D004995 0.0e+00 1302.3 1879 41.9
CAN.G473.4 Capsicum annuum HOM05D004010 ORTHO05D004995 0.0e+00 1268.1 1363 49.7
AUR62034752 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1209.9 2064 37.6
Cc07_g01800 Coffea canephora HOM05D004010 ORTHO05D004995 0.0e+00 1195.6 1354 48.4
Nitab4.5_0002682g0110 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1191.8 1899 39.1
PGSC0003DMG400012627 Solanum tuberosum HOM05D004010 ORTHO05D004995 0.0e+00 1165.2 1226 50.5
Oeu006813.1 Olea europaea HOM05D004010 ORTHO05D004995 0.0e+00 1148.3 1307 49.7
MBI10_g32033_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 0.0e+00 1147.5 1366 47.7
Os01g0169500 Oryza sativa ssp. japonica HOM05D004010 ORTHO05D004995 0.0e+00 1134.0 1850 37.9
Actinidia36110 Actinidia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1095.1 1186 51.9
Zm00001eb123050 Zea mays HOM05D004010 ORTHO05D004995 0.0e+00 1077.4 1870 37.8
COL.COLO4_29097 Corchorus olitorius HOM05D004010 ORTHO05D004995 9.9e-291 1004.6 970 55.6
Hund06718 Selenicereus undatus HOM05D004010 ORTHO05D004995 1.2e-232 811.6 1034 44.5
Lju41A39T81 Lonicera japonica HOM05D004010 ORTHO05D004995 5.4e-228 796.2 836 51.8
Atru.chr6.2370 Acer truncatum HOM05D004010 ORTHO05D004995 3.7e-221 773.5 644 60.6
Cpa.g.sc108.59 Carica papaya HOM05D004010 ORTHO05D004995 6.3e-221 772.7 724 57.3
Mapoly0001s0420 Marchantia polymorpha HOM05D004010 ORTHO05D004995 2.6e-214 750.7 1937 30.7
Lju41A39G70 Lonicera japonica HOM05D004010 ORTHO05D004995 4.4e-198 696.8 936 45.0
Hund06717 Selenicereus undatus HOM05D004010 ORTHO05D004995 9.6e-177 625.9 845 44.3
Actinidia36109 Actinidia chinensis HOM05D004010 ORTHO05D004995 3.4e-174 617.5 643 51.6
Cpa.g.sc108.58 Carica papaya HOM05D004010 ORTHO05D004995 2.5e-169 601.3 1148 35.6
SMO361G0448 Selaginella moellendorffii HOM05D004010 ORTHO05D004995 1.4e-164 585.5 1838 28.0
Phvul.004G009761 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.1e-161 575.9 610 49.8
vmacro05456 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 2.1e-155 555.1 827 41.1
COL.COLO4_29096 Corchorus olitorius HOM05D004010 ORTHO05D004995 1.3e-152 545.8 528 56.2
CDE05G1248 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 1.4e-151 542.3 790 41.5
FAN05G3555 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.4e-151 542.3 589 50.9
Phvul.004G009161 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 6.1e-147 526.9 643 44.3
Phvul.004G009536 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.0e-138 498.0 523 50.1
Sopen00g011090 Solanum pennellii HOM05D004010 ORTHO05D004995 7.7e-118 430.3 418 54.3
Cc07_g01810 Coffea canephora HOM05D004010 ORTHO05D004995 1.2e-105 389.8 433 48.0
CDE05G2835 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 2.0e-105 389.0 632 37.7
Gohir.A09G028500 Gossypium hirsutum HOM05D004010 ORTHO05D004995 7.5e-105 387.1 455 48.1
Phvul.004G009118 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.1e-103 383.3 371 53.9
Phvul.007G113156 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 9.5e-100 370.2 341 56.9
Ciclev10017517m.g Citrus clementina HOM05D004010 ORTHO05D004995 4.4e-97 361.3 346 55.8
Prupe.3G290500 Prunus persica HOM05D004010 ORTHO05D004995 1.9e-95 355.9 430 48.4
Phvul.004G009109 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.9e-93 348.2 434 42.9
Oeu006812.1 Olea europaea HOM05D004010 ORTHO05D004995 5.0e-85 321.2 431 44.1
CSS0026540 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 6.4e-80 304.3 352 46.9
CDE05G1902 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 2.4e-79 302.4 337 49.0
Hma1.2p1_1291F.1_g273520 Hydrangea macrophylla HOM05D004010 ORTHO05D004995 7.1e-79 300.8 401 46.4
SEGI_19034 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 4.4e-73 281.6 614 32.1
SEGI_20333 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 3.5e-70 271.9 442 36.4
vmacro05455 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 9.0e-66 257.3 546 33.7
Atru.chr6.2368 Acer truncatum HOM05D004010 ORTHO05D004995 2.9e-64 252.3 215 60.5
Psat2g096200 Pisum sativum HOM05D004010 ORTHO05D004995 8.4e-64 250.8 269 48.0
BcaB05g24178 Brassica carinata HOM05D004010 ORTHO05D027244 1.2e-62 246.9 183 70.5
unitig_0.g541 Utricularia gibba HOM05D004010 ORTHO05D004995 4.3e-60 238.4 331 40.2
Atru.chr6.2275 Acer truncatum HOM05D004010 ORTHO05D004995 2.4e-58 232.6 194 61.9
Actinidia15573 Actinidia chinensis HOM05D004010 ORTHO05D004995 1.5e-57 229.9 256 48.0
Sopen00g012710 Solanum pennellii HOM05D004010 ORTHO05D004995 5.4e-55 221.5 253 45.1
CSS0021155 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 9.3e-55 220.7 226 53.1
CBR_g19445 Chara braunii HOM05D004010 ORTHO05D004995 1.8e-45 189.9 948 24.8
MBI10_g46391_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 3.9e-45 188.7 279 41.2
Phvul.004G009701 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.3e-44 185.7 203 47.3
FAN05G1652 Fragaria x ananassa HOM05D004010 ORTHO05D004995 5.8e-41 174.9 236 44.9
CBR_g19447 Chara braunii HOM05D004010 ORTHO05D004995 1.0e-40 174.1 874 25.9
MBI10_g39276_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 1.9e-39 169.9 229 42.4
MBI10_g38112_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 9.3e-39 167.5 266 41.0
Atru.chr6.2281 Acer truncatum HOM05D004010 ORTHO05D004995 3.5e-38 165.6 142 57.0
Actinidia15574 Actinidia chinensis HOM05D004010 ORTHO05D004995 3.5e-38 165.6 250 41.6
FvH4_6g51551 Fragaria vesca HOM05D004010 ORTHO05D004995 1.5e-36 160.2 132 55.3
Atru.chr6.2371 Acer truncatum HOM05D004010 ORTHO05D004995 1.1e-34 154.1 149 52.3
RcHm_v2.0_Chr5g0081041 Rosa chinensis HOM05D004010 ORTHO05D004995 4.1e-34 152.1 188 44.7
CAN.G473.5 Capsicum annuum HOM05D004010 ORTHO05D004995 3.4e-33 149.1 137 58.4
Atru.chr6.2279 Acer truncatum HOM05D004010 ORTHO05D004995 5.0e-32 145.2 152 53.3
FAN14G2166 Fragaria x ananassa HOM05D004010 ORTHO05D004995 7.9e-30 137.9 126 57.1
FAN02G4182 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.4e-29 137.1 175 45.7
FvH4_6g51542 Fragaria vesca HOM05D004010 ORTHO05D004995 1.8e-29 136.7 170 45.3
Phvul.004G009127 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.3e-29 136.3 134 57.5
HPP92_004912 Vanilla planifolia HOM05D004010 ORTHO05D004995 6.7e-29 134.8 157 45.9
Ah.06g187170 Amaranthus hybridus HOM05D004010 ORTHO05D004995 4.8e-27 128.6 137 52.6
FAN14G1049 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.1e-26 127.5 225 38.2
Phvul.007G112678 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.4e-25 122.5 146 46.6
C05p30190 Brassica napus HOM05D015522 ORTHO05D027244 1.0e-24 120.9 132 58.3
C05p30200 Brassica napus HOM05D015522 ORTHO05D027244 3.8e-24 119.0 106 68.9
BcaB07g33347 Brassica carinata HOM05D004010 ORTHO05D004995 5.0e-24 118.6 63 90.5
FvH4_6g51560 Fragaria vesca HOM05D004010 ORTHO05D004995 5.0e-24 118.6 122 45.9
BcaC02g11087 Brassica carinata HOM05D004010 ORTHO05D006095 2.1e-22 113.2 165 44.8
FvH4_5g31861 Fragaria vesca HOM05D004010 ORTHO05D046033 7.9e-22 111.3 90 58.9
Phvul.004G008861 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.2e-19 103.2 104 50.0
SEGI_32252 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 2.8e-19 102.8 74 62.2
BolC5t31758H Brassica oleracea HOM05D015522 ORTHO05D031943 5.9e-17 95.1 117 54.7
C09p45130 Brassica napus HOM05D015522 ORTHO05D031943 8.5e-16 91.3 93 63.4
Atru.chr6.2280 Acer truncatum HOM05D004010 ORTHO05D004995 3.2e-15 89.4 101 48.5
BcaC04g20309 Brassica carinata HOM05D015522 ORTHO05D031943 3.2e-15 89.4 93 62.4
FvH4_6g51540 Fragaria vesca HOM05D004010 ORTHO05D004995 2.1e-14 86.7 93 45.2
HPP92_004913 Vanilla planifolia HOM05D004010 ORTHO05D004995 3.3e-12 79.3 82 52.4
Phvul.004G009000 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.7e-11 77.0 112 41.1
Atru.chr6.2369 Acer truncatum HOM05D004010 ORTHO05D004995 8.2e-11 74.7 127 38.6
TPR.G14087 Trifolium pratense HOM05D004010 ORTHO05D004995 8.2e-11 74.7 52 67.3
RcHm_v2.0_Chr4g0387881 Rosa chinensis HOM05D004010 ORTHO05D343204 1.1e-10 74.3 120 37.5
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 1.7e-08 67.0 49 59.2
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 1.7e-08 67.0 49 59.2
RcHm_v2.0_Chr3g0488481 Rosa chinensis HOM05D004010 ORTHO05D004995 3.8e-08 65.9 121 34.7
FvH4_6g51541 Fragaria vesca HOM05D004010 ORTHO05D004995 9.4e-07 61.2 53 66.0
Hma1.2p1_1397F.1_g280710 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 8.0e-06 58.2 52 50.0


User provided reference genes

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