Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 0.0e+00 1124.8 586 100.0
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 4.3e-256 887.9 616 78.4
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 1.3e-252 876.3 616 77.8
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 3.8e-252 874.8 621 77.1
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 3.2e-251 871.7 618 77.7
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 3.2e-251 871.7 618 77.7
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 2.7e-250 868.6 618 77.7
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 4.0e-246 854.7 617 76.7
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 4.2e-243 844.7 639 73.2
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 2.7e-226 788.9 619 71.6
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 1.5e-224 783.1 622 70.1
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 2.5e-224 782.3 627 70.0
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 8.2e-223 777.3 615 70.4
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 3.9e-217 758.4 626 68.7
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 1.5e-213 746.5 631 66.4
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 1.2e-181 640.6 625 56.5
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 3.7e-175 619.0 626 55.6
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 4.9e-175 618.6 631 55.3
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 8.3e-175 617.8 624 55.1
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 7.8e-173 611.3 625 55.5
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 2.3e-172 609.8 622 54.3
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 8.6e-172 607.8 628 54.9
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 2.5e-171 606.3 624 53.5
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 6.2e-170 601.7 626 52.7
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 8.0e-170 601.3 625 53.6
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 8.9e-169 597.8 635 52.0
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 1.2e-168 597.4 633 52.9
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 5.8e-168 595.1 625 53.6
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 6.4e-167 591.7 623 52.6
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 2.7e-165 586.3 626 51.4
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 3.5e-165 585.9 627 53.0
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 8.6e-164 581.3 619 52.5
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 4.3e-163 578.9 628 52.4
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 1.5e-160 570.5 623 51.5
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 3.4e-160 569.3 627 50.7
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 9.8e-160 567.8 620 51.1
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 2.4e-158 563.1 622 49.5
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 3.2e-158 562.8 620 51.1
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 3.2e-158 562.8 623 51.0
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 3.2e-158 562.8 620 49.7
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 9.2e-158 561.2 540 58.0
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 1.2e-157 560.8 626 50.6
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.6e-157 560.5 620 49.4
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 2.7e-157 559.7 620 49.4
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 3.5e-157 559.3 660 49.5
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 3.5e-157 559.3 614 50.8
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 6.6e-156 555.1 579 54.2
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 8.6e-156 554.7 622 50.2
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 1.9e-155 553.5 626 50.5
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 2.5e-155 553.1 608 52.1
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 3.3e-155 552.7 561 54.2
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 1.4e-153 547.4 612 50.0
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 4.0e-153 545.8 628 50.2
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 6.8e-153 545.0 621 49.1
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 2.6e-152 543.1 633 48.3
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 4.4e-152 542.3 621 49.3
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 7.6e-152 541.6 616 49.4
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 9.9e-152 541.2 621 49.8
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 3.8e-151 539.3 550 54.2
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 4.9e-151 538.9 556 53.4
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 6.4e-151 538.5 623 49.4
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 4.1e-150 535.8 619 49.1
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 4.1e-150 535.8 622 48.1
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 9.2e-150 534.6 627 48.5
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 2.1e-149 533.5 609 49.8
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 3.5e-149 532.7 665 47.5
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 4.6e-149 532.3 632 47.9
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 8.6e-148 528.1 625 49.0
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 7.3e-147 525.0 664 46.8
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 4.0e-145 519.2 513 55.8
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 8.9e-145 518.1 513 55.6
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 1.2e-144 517.7 576 50.5
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 5.8e-144 515.4 576 50.3
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 7.6e-144 515.0 614 47.7
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 2.9e-143 513.1 620 48.2
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 6.4e-143 511.9 571 50.8
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 1.9e-142 510.4 621 48.3
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 2.4e-142 510.0 627 47.2
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 3.5e-141 506.1 524 53.4
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 3.0e-140 503.1 623 46.5
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 4.3e-139 499.2 515 54.0
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 2.4e-137 493.4 618 44.7
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 4.9e-135 485.7 657 44.1
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 1.5e-131 474.2 613 46.8
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 4.3e-131 472.6 541 49.9
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 1.3e-130 471.1 623 44.8
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 4.0e-129 466.1 510 50.8
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 5.8e-128 462.2 548 49.3
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 7.6e-128 461.8 446 57.4
C07p37210 Brassica napus HOM05D004744 ORTHO05D005655 4.9e-127 459.1 509 59.5
BolC7t44231H Brassica oleracea HOM05D004744 ORTHO05D005655 4.9e-127 459.1 509 59.5
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 9.3e-126 454.9 464 53.0
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 4.6e-125 452.6 459 55.6
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 1.3e-124 451.1 622 41.8
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 2.2e-119 433.7 587 46.5
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 1.9e-118 430.6 657 41.6
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 8.7e-116 421.8 624 41.7
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 1.1e-105 388.3 620 40.8
BcaC06g33762 Brassica carinata HOM05D004744 ORTHO05D005655 9.1e-105 385.2 376 63.0
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 4.4e-99 366.3 388 50.8
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 2.2e-98 364.0 543 42.2
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 1.5e-91 341.3 342 55.0
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 9.1e-89 332.0 479 41.8
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 8.2e-82 308.9 253 69.2
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 7.0e-81 305.8 253 68.8
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 3.4e-75 287.0 160 93.1
TPR.G18367 Trifolium pratense HOM05D004744 ORTHO05D005655 9.1e-73 278.9 363 46.3
Mapoly0033s0067 Marchantia polymorpha HOM05D004744 ORTHO05D005655 1.0e-68 265.4 623 30.5
Pp3c12_9830 Physcomitrium patens HOM05D004744 ORTHO05D005655 1.5e-62 245.0 624 28.4
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 2.1e-61 241.1 621 31.6
SMO134G0198 Selaginella moellendorffii HOM05D004744 ORTHO05D005655 3.0e-60 237.3 611 29.3
C08p49950 Brassica napus HOM05D004744 ORTHO05D005655 3.4e-59 233.8 214 65.9
BolC8t47068H Brassica oleracea HOM05D004744 ORTHO05D005655 3.4e-59 233.8 160 82.5
vmacro12150 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 2.9e-58 230.7 349 41.5
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 7.0e-49 199.5 255 44.3
BcaC07g41939 Brassica carinata HOM05D004744 ORTHO05D005655 1.7e-47 194.9 210 60.0
AagrBONN_evm.TU.Sc2ySwM_117.465 Anthoceros agrestis HOM05D004744 ORTHO05D005655 5.6e-46 189.9 507 30.0
Ah.14g079380 Amaranthus hybridus HOM05D004744 ORTHO05D005655 2.7e-32 144.4 168 44.6
CBR_g34813 Chara braunii HOM05D004744 ORTHO05D005655 1.0e-31 142.5 366 28.7
Ah.14g079390 Amaranthus hybridus HOM05D004744 ORTHO05D005655 8.7e-31 139.4 208 41.3
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 1.5e-27 128.6 157 45.2
DCAR_000575 Daucus carota HOM05D004744 ORTHO05D005655 2.0e-27 128.3 141 47.5
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 2.4e-25 121.3 164 39.6
GSVIVG01011258001 Vitis vinifera HOM05D004744 ORTHO05D005655 6.0e-24 116.7 130 53.8
FAN14G1088 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.1e-20 105.9 387 28.9
SEGI_40333 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 4.0e-20 104.0 142 41.5
Pp3c4_13414 Physcomitrium patens HOM05D004744 ORTHO05D005655 7.6e-19 99.8 324 28.4
C08p02720 Brassica napus HOM05D004744 ORTHO05D005655 3.8e-18 97.4 131 54.2
FAN09G4690 Fragaria x ananassa HOM05D004744 ORTHO05D005655 4.9e-18 97.1 346 31.2
DCAR_000578 Daucus carota HOM05D004744 ORTHO05D005655 4.6e-16 90.5 113 40.7
FvH4_6g32120 Fragaria vesca HOM05D004744 ORTHO05D005655 2.5e-14 84.7 119 46.2
SEGI_39231 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 2.8e-13 81.3 146 30.8
SHI18507 Sapria himalayana HOM05D004744 ORTHO05D005655 4.8e-13 80.5 85 51.8
Cpa.g.sc187.23 Carica papaya HOM05D004744 ORTHO05D005655 1.5e-11 75.5 82 53.7
COL.COLO4_18909 Corchorus olitorius HOM05D004744 ORTHO05D005655 4.5e-11 73.9 76 52.6
BcaC06g36552 Brassica carinata HOM05D016909 ORTHO05D027203 2.2e-10 71.6 92 45.7
C07p02990 Brassica napus HOM05D016909 ORTHO05D027203 8.4e-10 69.7 92 45.7
A06p20760 Brassica napus HOM05D067795 ORTHO05D039273 7.1e-09 66.6 79 50.6
Dinv18155 Davidia involucrata HOM05D004744 ORTHO05D005655 7.1e-09 66.6 45 73.3
BcaC01g01884 Brassica carinata HOM05D067795 ORTHO05D039273 1.6e-08 65.5 78 52.6
Eucgr.L02780 Eucalyptus grandis HOM05D004744 ORTHO05D005655 2.1e-08 65.1 45 71.1
SHI18506 Sapria himalayana HOM05D004744 ORTHO05D005655 3.9e-07 60.8 42 66.7
SEGI_08303 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 3.9e-07 60.8 69 44.9
Rhsim01G0220500 Rhododendron simsii HOM05D004744 ORTHO05D005655 1.1e-06 59.3 50 60.0
AL4G30280 Arabidopsis lyrata HOM05D014236 ORTHO05D015933 3.3e-06 57.8 99 38.4


User provided reference genes

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