Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 5.8e-89 330.9 169 100.0
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 1.7e-75 286.2 160 93.1
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 1.4e-66 256.5 163 83.4
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 1.2e-65 253.4 163 82.8
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 1.2e-62 243.4 163 79.8
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 4.7e-62 241.5 163 77.3
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 4.7e-62 241.5 163 77.3
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 5.7e-60 234.6 165 76.4
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 5.7e-60 234.6 165 76.4
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 5.7e-60 234.6 165 76.4
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 7.4e-60 234.2 163 76.1
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 2.8e-59 232.3 163 74.8
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 2.5e-55 219.2 162 71.6
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 2.1e-54 216.1 163 69.9
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 6.1e-54 214.5 162 69.1
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 1.5e-47 193.4 164 62.8
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 2.5e-47 192.6 162 66.7
BcaC06g33762 Brassica carinata HOM05D004744 ORTHO05D005655 4.7e-46 188.3 151 73.5
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 8.0e-46 187.6 164 65.2
C07p37210 Brassica napus HOM05D004744 ORTHO05D005655 3.7e-43 178.7 150 72.0
BolC7t44231H Brassica oleracea HOM05D004744 ORTHO05D005655 3.7e-43 178.7 150 72.0
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 4.1e-42 175.3 164 59.1
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 4.1e-42 175.3 164 59.1
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 9.1e-42 174.1 164 57.9
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 4.5e-41 171.8 163 55.2
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 1.0e-40 170.6 163 54.6
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 1.7e-40 169.9 163 55.2
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 2.3e-40 169.5 163 52.1
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 3.8e-40 168.7 159 56.0
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 1.9e-39 166.4 164 51.8
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 1.2e-38 163.7 165 52.1
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 1.0e-37 160.6 160 53.8
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 1.0e-37 160.6 165 51.5
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 1.4e-37 160.2 164 51.8
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 1.4e-37 160.2 163 50.3
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 2.3e-37 159.5 165 51.5
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 5.2e-37 158.3 164 50.6
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 6.8e-37 157.9 165 50.9
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 2.6e-36 156.0 164 49.4
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 4.4e-36 155.2 161 49.1
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 4.4e-36 155.2 164 48.8
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 4.4e-36 155.2 163 49.7
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 7.5e-36 154.5 161 50.3
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 7.5e-36 154.5 164 49.4
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 7.5e-36 154.5 168 47.0
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 9.8e-36 154.1 163 50.3
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 9.8e-36 154.1 163 49.7
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 1.3e-35 153.7 161 47.8
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 1.7e-35 153.3 163 50.3
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 1.7e-35 153.3 165 48.5
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 1.7e-35 153.3 165 47.9
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 3.7e-35 152.1 164 49.4
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 4.9e-35 151.8 163 49.7
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 6.3e-35 151.4 161 47.2
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 8.3e-35 151.0 160 49.4
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 1.1e-34 150.6 165 49.1
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 1.8e-34 149.8 161 49.7
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 3.1e-34 149.1 164 48.2
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 3.1e-34 149.1 161 49.7
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 3.1e-34 149.1 164 48.8
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 5.4e-34 148.3 161 49.1
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 5.4e-34 148.3 161 51.6
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 1.2e-33 147.1 165 50.9
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 1.2e-33 147.1 161 49.7
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 1.6e-33 146.7 166 47.6
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 1.6e-33 146.7 170 49.4
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 2.7e-33 146.0 161 49.1
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 4.5e-33 145.2 165 50.3
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 7.8e-33 144.4 166 46.4
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 7.8e-33 144.4 163 46.6
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 2.3e-32 142.9 161 46.6
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 2.9e-32 142.5 163 46.0
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 6.6e-32 141.4 160 45.6
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 8.6e-32 141.0 165 49.7
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 8.6e-32 141.0 158 45.6
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 2.5e-31 139.4 162 44.4
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 3.3e-31 139.0 161 46.0
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 5.6e-31 138.3 160 45.6
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 5.6e-31 138.3 160 46.2
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 7.3e-31 137.9 160 45.0
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 2.8e-30 136.0 158 45.6
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 8.0e-30 134.4 162 42.0
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 2.3e-29 132.9 147 48.3
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 2.3e-29 132.9 165 44.8
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 6.8e-29 131.3 162 41.4
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 2.6e-28 129.4 161 45.3
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 4.4e-28 128.6 164 42.1
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 4.4e-28 128.6 161 43.5
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 1.3e-27 127.1 163 42.9
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 4.9e-27 125.2 160 47.5
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 1.1e-26 124.0 157 45.2
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 1.4e-26 123.6 140 45.7
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 1.9e-26 123.2 164 42.7
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 1.9e-26 123.2 128 52.3
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 1.2e-25 120.6 163 44.8
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 6.0e-25 118.2 113 53.1
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 7.8e-25 117.9 169 40.2
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 1.7e-24 116.7 160 40.0
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 9.5e-23 110.9 134 47.0
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 2.1e-22 109.8 127 45.7
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 1.1e-21 107.5 143 42.0
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 2.6e-20 102.8 160 38.1
DCAR_000578 Daucus carota HOM05D004744 ORTHO05D005655 4.4e-20 102.1 113 43.4
vmacro12150 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 1.4e-18 97.1 160 36.9
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 5.4e-18 95.1 131 44.3
SEGI_39231 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 2.7e-17 92.8 147 33.3
Cpa.g.sc187.23 Carica papaya HOM05D004744 ORTHO05D005655 1.0e-16 90.9 115 47.8
COL.COLO4_18909 Corchorus olitorius HOM05D004744 ORTHO05D005655 1.7e-16 90.1 77 58.4
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 1.5e-15 87.0 80 55.0
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 4.4e-12 75.5 80 47.5
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 1.7e-11 73.6 122 37.7
Pp3c12_9830 Physcomitrium patens HOM05D004744 ORTHO05D005655 9.2e-10 67.8 164 27.4
Pp3c4_13414 Physcomitrium patens HOM05D004744 ORTHO05D005655 2.7e-09 66.2 163 28.2
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 7.8e-09 64.7 53 60.4
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 7.8e-09 64.7 53 60.4


User provided reference genes

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