Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g30919 Brassica carinata HOM05D000827 ORTHO05D001318 5.5e-37 157.1 80 100.0
A03p62820 Brassica napus HOM05D000827 ORTHO05D001318 6.7e-27 123.6 65 98.5
BraA03t15358Z Brassica rapa HOM05D000827 ORTHO05D001318 6.7e-27 123.6 65 98.5
C07p60510 Brassica napus HOM05D000827 ORTHO05D001318 1.7e-25 119.0 66 97.0
BolC7t46483H Brassica oleracea HOM05D000827 ORTHO05D001318 1.7e-25 119.0 66 97.0
C01p04480 Brassica napus HOM05D000827 ORTHO05D001318 1.2e-23 112.8 65 92.3
BolC1t00434H Brassica oleracea HOM05D000827 ORTHO05D001318 1.2e-23 112.8 65 92.3
BraA01t00400Z Brassica rapa HOM05D000827 ORTHO05D001318 1.2e-23 112.8 65 92.3
AL7G16980 Arabidopsis lyrata HOM05D000827 ORTHO05D001318 2.6e-23 111.7 65 87.7
Thhalv10026522m.g Eutrema salsugineum HOM05D000827 ORTHO05D001318 2.2e-22 108.6 65 92.3
Carub.0007s0607 Capsella rubella HOM05D000827 ORTHO05D001318 5.0e-22 107.5 65 87.7
AT4G34290 Arabidopsis thaliana HOM05D000827 ORTHO05D001318 4.2e-21 104.4 65 83.1
CARHR242480 Cardamine hirsuta HOM05D000827 ORTHO05D001318 1.8e-19 99.0 67 85.1
Aa31LG8G12940 Aethionema arabicum HOM05D000827 ORTHO05D001318 1.1e-18 96.3 65 81.5
BcaC01g00917 Brassica carinata HOM05D000827 ORTHO05D001318 1.5e-18 95.9 67 71.6
THA.LOC104819539 Tarenaya hassleriana HOM05D000827 ORTHO05D001318 3.3e-18 94.7 79 70.9
THA.LOC104807230 Tarenaya hassleriana HOM05D000827 ORTHO05D001318 5.7e-18 94.0 78 71.8
Carub.0003s2888 Capsella rubella HOM05D000827 ORTHO05D001318 7.4e-18 93.6 65 80.0
Aa31sc72G70 Aethionema arabicum HOM05D000827 ORTHO05D001318 4.8e-17 90.9 64 78.1
Thhalv10022904m.g Eutrema salsugineum HOM05D000827 ORTHO05D001318 8.2e-17 90.1 64 79.7
AL3G46700 Arabidopsis lyrata HOM05D000827 ORTHO05D001318 4.1e-16 87.8 65 76.9
AT2G14880 Arabidopsis thaliana HOM05D000827 ORTHO05D001318 1.6e-15 85.9 65 75.4
DCAR_001667 Daucus carota HOM05D000827 ORTHO05D001318 2.2e-14 82.0 64 65.6
Gohir.D12G020900 Gossypium hirsutum HOM05D000827 ORTHO05D001318 2.9e-14 81.6 65 72.3
Sp3g28300 Schrenkiella parvula HOM05D000827 ORTHO05D001318 3.8e-14 81.3 61 73.8
Gorai.008G021200 Gossypium raimondii HOM05D000827 ORTHO05D001318 5.0e-14 80.9 65 72.3
DCAR_021969 Daucus carota HOM05D000827 ORTHO05D001318 8.5e-14 80.1 62 67.7
TAR381G1509 Trochodendron aralioides HOM05D000827 ORTHO05D001318 8.5e-14 80.1 65 67.7
Manes.10G072700 Manihot esculenta HOM05D000827 ORTHO05D001318 3.2e-13 78.2 65 64.6
Atru.chr5.2422 Acer truncatum HOM05D000827 ORTHO05D001318 4.2e-13 77.8 65 69.2
Eucgr.G01289 Eucalyptus grandis HOM05D000827 ORTHO05D001318 4.2e-13 77.8 64 68.8
QL11p032161 Quercus lobata HOM05D000827 ORTHO05D001318 4.2e-13 77.8 65 64.6
Gohir.D02G206000 Gossypium hirsutum HOM05D000827 ORTHO05D001318 5.5e-13 77.4 79 55.7
Migut.I00273 Erythranthe guttata HOM05D000827 ORTHO05D001318 7.2e-13 77.0 72 62.5
Gohir.A12G020600 Gossypium hirsutum HOM05D000827 ORTHO05D001318 7.2e-13 77.0 64 70.3
Nn1g04640 Nelumbo nucifera HOM05D000827 ORTHO05D001318 7.2e-13 77.0 65 66.2
A08p16970 Brassica napus HOM05D000827 ORTHO05D001318 9.4e-13 76.6 45 82.2
BraA08t33660Z Brassica rapa HOM05D000827 ORTHO05D001318 9.4e-13 76.6 45 82.2
CiPaw.06G167600 Carya illinoinensis HOM05D000827 ORTHO05D001318 1.2e-12 76.3 65 64.6
Aqoxy6G02793 Aquilegia oxysepala HOM05D000827 ORTHO05D001318 1.6e-12 75.9 69 58.0
Gohir.A03G184500 Gossypium hirsutum HOM05D000827 ORTHO05D001318 1.6e-12 75.9 79 54.4
Thecc.02G112800 Theobroma cacao HOM05D000827 ORTHO05D001318 1.6e-12 75.9 65 67.7
TAR628G1002 Trochodendron aralioides HOM05D000827 ORTHO05D001318 1.6e-12 75.9 56 66.1
Migut.A00713 Erythranthe guttata HOM05D000827 ORTHO05D001318 2.7e-12 75.1 58 69.0
Migut.B00414 Erythranthe guttata HOM05D000827 ORTHO05D001318 2.7e-12 75.1 58 65.5
TAR376G0708 Trochodendron aralioides HOM05D000827 ORTHO05D001318 2.7e-12 75.1 65 64.6
CSS0048380 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001318 3.6e-12 74.7 65 66.2
Nn5g30486 Nelumbo nucifera HOM05D000827 ORTHO05D001318 3.6e-12 74.7 65 63.1
Gorai.005G233400 Gossypium raimondii HOM05D000827 ORTHO05D001318 6.1e-12 73.9 79 54.4
ATR0618G387 Amborella trichopoda HOM05D000827 ORTHO05D001318 8.0e-12 73.6 60 65.0
Manes.10G072600 Manihot esculenta HOM05D000827 ORTHO05D001318 8.0e-12 73.6 65 63.1
Oeu016085.1 Olea europaea HOM05D000827 ORTHO05D001318 8.0e-12 73.6 66 63.6
Dinv42213 Davidia involucrata HOM05D000827 ORTHO05D001318 1.4e-11 72.8 65 66.2
Ciclev10029545m.g Citrus clementina HOM05D000827 ORTHO05D001318 2.3e-11 72.0 64 57.8
Hma1.2p1_1174F.1_g263910 Hydrangea macrophylla HOM05D000827 ORTHO05D001318 2.3e-11 72.0 65 64.6
unitig_699.g19872 Utricularia gibba HOM05D005496 ORTHO05D006677 2.3e-11 72.0 65 60.0
TWI31G1098 Tripterygium wilfordii HOM05D000827 ORTHO05D001318 3.0e-11 71.6 65 61.5
MSTRG.16697 Avicennia marina HOM05D000827 ORTHO05D001318 4.0e-11 71.2 80 55.0
CDE04G0823 Ceratophyllum demersum HOM05D000827 ORTHO05D001318 4.0e-11 71.2 64 59.4
Oeu010412.1 Olea europaea HOM05D000827 ORTHO05D001318 4.0e-11 71.2 79 57.0
PGR042G0825 Punica granatum HOM05D000827 ORTHO05D001318 4.0e-11 71.2 65 66.2
CSS0013162 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001318 5.2e-11 70.9 65 64.6
MSTRG.20202 Avicennia marina HOM05D000827 ORTHO05D001318 6.7e-11 70.5 80 55.0
Cpa.g.sc200.3 Carica papaya HOM05D000827 ORTHO05D001318 8.8e-11 70.1 65 64.6
ATR0661G022 Amborella trichopoda HOM05D000827 ORTHO05D001318 1.1e-10 69.7 50 68.0
Dinv15782 Davidia involucrata HOM05D000827 ORTHO05D001318 1.1e-10 69.7 65 63.1
SalBow6G5645 Salvia bowleyana HOM05D000827 ORTHO05D001318 1.5e-10 69.3 71 53.5
TWI79G0611 Tripterygium wilfordii HOM05D000827 ORTHO05D001318 2.0e-10 68.9 65 61.5
Actinidia04377 Actinidia chinensis HOM05D000827 ORTHO05D001318 2.6e-10 68.6 61 60.7
Cfa004619 Carpinus fangiana HOM05D000827 ORTHO05D001318 2.6e-10 68.6 64 59.4
PGSC0003DMG400025852 Solanum tuberosum HOM05D000827 ORTHO05D001318 2.6e-10 68.6 65 63.1
arahy.Tifrunner.gnm1.ann1.4BPU9Y Arachis hypogaea HOM05D000827 ORTHO05D001318 3.3e-10 68.2 64 64.1
arahy.Tifrunner.gnm1.ann1.MJPM8B Arachis hypogaea HOM05D000827 ORTHO05D001318 3.3e-10 68.2 64 64.1
COL.COLO4_32550 Corchorus olitorius HOM05D000827 ORTHO05D001318 3.3e-10 68.2 64 62.5
Lsat_1_v5_gn_7_86080 Lactuca sativa HOM05D000827 ORTHO05D001318 3.3e-10 68.2 65 55.4
Hma1.2p1_1023F.1_g248950 Hydrangea macrophylla HOM05D000827 ORTHO05D001318 4.4e-10 67.8 57 63.2
Lj5A217G84 Lonicera japonica HOM05D000827 ORTHO05D001318 4.4e-10 67.8 66 60.6
Nitab4.5_0004396g0010 Nicotiana tabacum HOM05D000827 ORTHO05D001318 4.4e-10 67.8 58 67.2
CiPaw.05G014400 Carya illinoinensis HOM05D000827 ORTHO05D001318 5.7e-10 67.4 65 58.5
Solyc01g107330.4 Solanum lycopersicum HOM05D000827 ORTHO05D001318 5.7e-10 67.4 65 63.1
Sopen01g049570 Solanum pennellii HOM05D000827 ORTHO05D001318 5.7e-10 67.4 65 63.1
ClCG02G006640 Citrullus lanatus HOM05D000827 ORTHO05D001318 7.5e-10 67.0 64 56.2
Sed0001641 Sechium edule HOM05D000827 ORTHO05D001318 7.5e-10 67.0 64 56.2
Nitab4.5_0002017g0070 Nicotiana tabacum HOM05D000827 ORTHO05D001318 1.3e-09 66.2 58 65.5
SGA_v2.0_scaffold13G06620 Striga asiatica HOM05D000827 ORTHO05D001318 1.3e-09 66.2 79 53.2
Actinidia34382 Actinidia chinensis HOM05D000827 ORTHO05D001318 1.7e-09 65.9 65 56.9
Phvul.002G052700 Phaseolus vulgaris HOM05D000827 ORTHO05D001318 1.7e-09 65.9 65 60.0
CDE06G1156 Ceratophyllum demersum HOM05D000827 ORTHO05D001318 2.2e-09 65.5 63 55.6
Medtr5g005200 Medicago truncatula HOM05D000827 ORTHO05D001318 2.2e-09 65.5 64 59.4
vmacro19463 Vaccinium macrocarpon HOM05D000827 ORTHO05D001318 2.2e-09 65.5 65 61.5
Prupe.8G139100 Prunus persica HOM05D000827 ORTHO05D001318 3.7e-09 64.7 65 60.0
EL10Ac6g15667 Beta vulgaris HOM05D000827 ORTHO05D001318 4.8e-09 64.3 59 55.9
Nitab4.5_0001480g0030 Nicotiana tabacum HOM05D000827 ORTHO05D001318 4.8e-09 64.3 66 63.6
Nitab4.5_0004685g0010 Nicotiana tabacum HOM05D000827 ORTHO05D001318 4.8e-09 64.3 66 63.6
PSO541G1858 Papaver somniferum HOM05D000827 ORTHO05D001318 4.8e-09 64.3 40 67.5
PSO675G7513 Papaver somniferum HOM05D000827 ORTHO05D001318 4.8e-09 64.3 40 67.5
Psat4g228120 Pisum sativum HOM05D000827 ORTHO05D001318 6.3e-09 63.9 64 56.2
Potri.009G092200 Populus trichocarpa HOM05D000827 ORTHO05D001318 6.3e-09 63.9 81 50.6
HanXRQChr16g0509121 Helianthus annuus HOM05D000827 ORTHO05D001318 1.1e-08 63.2 66 54.5
Ah.03g146290 Amaranthus hybridus HOM05D000827 ORTHO05D001318 1.4e-08 62.8 57 57.9
Sabra09G0070900 Salix brachista HOM05D000827 ORTHO05D001318 1.4e-08 62.8 81 49.4
CAN.G606.32 Capsicum annuum HOM05D000827 ORTHO05D001318 1.8e-08 62.4 65 61.5
CsaV3_7G007990 Cucumis sativus L. HOM05D000827 ORTHO05D001318 1.8e-08 62.4 78 46.2
RcHm_v2.0_Chr6g0254211 Rosa chinensis HOM05D000827 ORTHO05D001318 1.8e-08 62.4 79 51.9
Duzib132G0744 Durio zibethinus HOM05D000827 ORTHO05D001318 2.4e-08 62.0 65 60.0
Sopen10g020980 Solanum pennellii HOM05D000827 ORTHO05D001318 2.4e-08 62.0 66 57.6
Zm00001eb214330 Zea mays HOM05D000827 ORTHO05D001318 2.4e-08 62.0 46 56.5
Lj1g0012448 Lotus japonicus HOM05D000827 ORTHO05D001318 4.1e-08 61.2 65 52.3
PGSC0003DMG400009782 Solanum tuberosum HOM05D000827 ORTHO05D001318 4.1e-08 61.2 58 60.3
AUR62003961 Chenopodium quinoa HOM05D000827 ORTHO05D001318 5.3e-08 60.8 63 52.4
MELO3C018505.2 Cucumis melo HOM05D000827 ORTHO05D001318 7.0e-08 60.5 64 51.6
Os03g0761000 Oryza sativa ssp. japonica HOM05D000827 ORTHO05D001318 7.0e-08 60.5 55 54.5
PGSC0003DMG400023191 Solanum tuberosum HOM05D000827 ORTHO05D001318 7.0e-08 60.5 58 60.3
CANSAT25G0462 Cannabis sativa HOM05D000827 ORTHO05D001318 9.1e-08 60.1 78 47.4
FAN15G0914 Fragaria x ananassa HOM05D000827 ORTHO05D001318 9.1e-08 60.1 78 51.3
FAN27G0395 Fragaria x ananassa HOM05D000827 ORTHO05D001318 9.1e-08 60.1 72 50.0
Potri.001G297400 Populus trichocarpa HOM05D000827 ORTHO05D001318 9.1e-08 60.1 75 49.3
Ca_24348_v3 Cicer arietinum L. HOM05D000827 ORTHO05D001318 1.2e-07 59.7 64 57.8
FvH4_2g04600 Fragaria vesca HOM05D000827 ORTHO05D001318 1.2e-07 59.7 72 50.0
FAN20G2663 Fragaria x ananassa HOM05D000827 ORTHO05D001318 1.2e-07 59.7 72 50.0
FAN24G1876 Fragaria x ananassa HOM05D000827 ORTHO05D001318 1.2e-07 59.7 72 50.0
unitig_744.g24220 Utricularia gibba HOM05D000827 ORTHO05D001318 1.2e-07 59.7 65 58.5
VMungo1215G3336 Vigna mungo HOM05D000827 ORTHO05D001318 1.2e-07 59.7 65 55.4
MSTRG.7167 Avicennia marina HOM05D000827 ORTHO05D001576 2.0e-07 58.9 75 41.3
Duzib052G0022 Durio zibethinus HOM05D000827 ORTHO05D001318 2.0e-07 58.9 65 55.4
Glyma.11G001000 Glycine max HOM05D000827 ORTHO05D001318 2.0e-07 58.9 60 51.7
DCAR_013509 Daucus carota HOM05D000827 ORTHO05D001318 2.7e-07 58.5 55 56.4
Glyma.01G243300 Glycine max HOM05D000827 ORTHO05D001318 2.7e-07 58.5 60 50.0
TPR.G8307 Trifolium pratense HOM05D000827 ORTHO05D001318 2.7e-07 58.5 65 53.8
Nn1g07395 Nelumbo nucifera HOM05D000827 ORTHO05D001576 3.5e-07 58.2 69 43.5
Cfa020258 Carpinus fangiana HOM05D000827 ORTHO05D001576 4.5e-07 57.8 78 38.5
Lalb_Chr05g0210761 Lupinus albus HOM05D000827 ORTHO05D001318 4.5e-07 57.8 46 67.4
Peaxi162Scf00193g00721 Petunia axillaris HOM05D000827 ORTHO05D001318 4.5e-07 57.8 75 42.7
Aqoxy1G04064 Aquilegia oxysepala HOM05D000827 ORTHO05D001576 5.9e-07 57.4 69 42.0
Sc16g0004950 Simmondsia chinensis HOM05D000827 ORTHO05D001318 7.7e-07 57.0 44 61.4
AUR62038273 Chenopodium quinoa HOM05D000827 ORTHO05D001318 1.0e-06 56.6 63 49.2
Oeu009392.1 Olea europaea HOM05D000827 ORTHO05D001576 1.7e-06 55.8 80 40.0
Pp3c9_18800 Physcomitrium patens HOM05D000827 ORTHO05D001576 1.7e-06 55.8 54 46.3
SalBow5G5239 Salvia bowleyana HOM05D000827 ORTHO05D001318 1.7e-06 55.8 57 49.1
Oeu016819.1 Olea europaea HOM05D000827 ORTHO05D001576 2.2e-06 55.5 80 40.0
Prupe.4G010100 Prunus persica HOM05D000827 ORTHO05D001576 2.2e-06 55.5 76 43.4
QL08p008344 Quercus lobata HOM05D000827 ORTHO05D001576 2.2e-06 55.5 70 38.6
TAR629G3131 Trochodendron aralioides HOM05D000827 ORTHO05D001576 2.2e-06 55.5 69 42.0
CARHR077600 Cardamine hirsuta HOM05D000827 ORTHO05D001318 2.9e-06 55.1 66 47.0
CDE02G1634 Ceratophyllum demersum HOM05D000827 ORTHO05D001318 2.9e-06 55.1 83 41.0
MD10G1332000 Malus domestica HOM05D000827 ORTHO05D001576 2.9e-06 55.1 72 45.8
Sopen08g001620 Solanum pennellii HOM05D000827 ORTHO05D001318 2.9e-06 55.1 75 44.0
MD05G1358100 Malus domestica HOM05D000827 ORTHO05D001576 3.8e-06 54.7 79 45.6
Oeu011145.1 Olea europaea HOM05D001121 ORTHO05D001256 3.8e-06 54.7 39 71.8
Actinidia39271 Actinidia chinensis HOM05D000827 ORTHO05D001576 6.5e-06 53.9 73 39.7
MSTRG.6970 Avicennia marina HOM05D000827 ORTHO05D001576 6.5e-06 53.9 62 40.3
A08p15670 Brassica napus HOM05D000827 ORTHO05D001576 6.5e-06 53.9 75 38.7
BraA08t33547Z Brassica rapa HOM05D000827 ORTHO05D001576 6.5e-06 53.9 75 38.7
CDE09G0627 Ceratophyllum demersum HOM05D000827 ORTHO05D001318 6.5e-06 53.9 55 49.1
Migut.B01419 Erythranthe guttata HOM05D000827 ORTHO05D001318 6.5e-06 53.9 78 41.0
Manes.09G133600 Manihot esculenta HOM05D000827 ORTHO05D001318 6.5e-06 53.9 71 40.8
Oeu007168.3 Olea europaea HOM05D000827 ORTHO05D001576 6.5e-06 53.9 79 43.0
Aa31LG6G4460 Aethionema arabicum HOM05D000827 ORTHO05D001576 8.5e-06 53.5 71 39.4
ATR0712G136 Amborella trichopoda HOM05D000827 ORTHO05D001576 8.5e-06 53.5 70 42.9
AL7G31250 Arabidopsis lyrata HOM05D000827 ORTHO05D001576 8.5e-06 53.5 67 40.3
BcaB03g11728 Brassica carinata HOM05D000827 ORTHO05D001576 8.5e-06 53.5 67 40.3
Carub.0007s1894 Capsella rubella HOM05D000827 ORTHO05D001576 8.5e-06 53.5 67 40.3
CARHR229270 Cardamine hirsuta HOM05D000827 ORTHO05D001576 8.5e-06 53.5 67 40.3
Cfa000097 Carpinus fangiana HOM05D000827 ORTHO05D001576 8.5e-06 53.5 71 39.4
Migut.M01398 Erythranthe guttata HOM05D000827 ORTHO05D001576 8.5e-06 53.5 78 38.5
Thhalv10025487m.g Eutrema salsugineum HOM05D000827 ORTHO05D001576 8.5e-06 53.5 67 40.3
Nitab4.5_0000030g0470 Nicotiana tabacum HOM05D000827 ORTHO05D001318 8.5e-06 53.5 78 41.0
Os12g0507500 Oryza sativa ssp. japonica HOM05D000827 ORTHO05D001318 8.5e-06 53.5 71 46.5
Sp7g20490 Schrenkiella parvula HOM05D000827 ORTHO05D001576 8.5e-06 53.5 67 40.3


User provided reference genes

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