Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 4.4e-283 977.2 483 100.0
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 2.0e-267 925.2 483 95.4
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 2.0e-267 925.2 483 95.4
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 1.7e-266 922.2 484 95.7
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 1.4e-265 919.1 483 95.4
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 1.4e-265 919.1 483 95.4
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 5.5e-257 890.6 483 91.9
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 1.9e-254 882.1 483 91.5
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 4.2e-249 864.4 483 88.0
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 1.8e-244 849.0 483 85.9
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 4.1e-244 847.8 483 85.9
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 6.9e-244 847.0 483 86.5
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 8.2e-237 823.5 481 83.2
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 6.1e-224 780.8 422 88.4
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 5.9e-219 764.2 471 83.7
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 1.0e-210 736.9 486 73.5
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 6.5e-210 734.2 486 73.3
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 9.5e-209 730.3 490 72.0
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 2.1e-208 729.2 436 83.0
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 2.8e-208 728.8 489 72.2
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 1.8e-207 726.1 489 71.8
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 5.2e-207 724.5 494 71.9
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 5.2e-207 724.5 488 72.1
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 6.8e-207 724.2 488 72.3
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 8.9e-207 723.8 487 71.9
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 1.3e-205 719.9 501 71.3
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 1.3e-205 719.9 487 70.8
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 4.1e-204 714.9 484 71.7
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 7.0e-204 714.1 496 70.8
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 7.0e-204 714.1 494 70.6
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 9.2e-204 713.8 489 71.4
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 1.2e-203 713.4 497 71.0
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 2.7e-203 712.2 430 77.0
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 2.7e-203 712.2 423 77.5
Cc01_g00810 Coffea canephora HOM05D001960 ORTHO05D007725 3.5e-203 711.8 488 71.1
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 3.5e-203 711.8 488 70.5
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 3.5e-203 711.8 488 70.5
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 4.5e-203 711.4 488 70.5
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 5.9e-203 711.1 501 70.3
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 5.9e-203 711.1 488 71.5
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 1.3e-202 709.9 487 70.6
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 2.3e-202 709.1 489 71.6
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 3.8e-202 708.4 478 70.9
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 5.0e-202 708.0 431 76.6
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 8.6e-202 707.2 489 69.9
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 1.1e-201 706.8 486 71.4
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 1.5e-201 706.4 425 76.2
CsaV3_5G037870 Cucumis sativus L. HOM05D001960 ORTHO05D007725 3.3e-201 705.3 451 73.2
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 3.3e-201 705.3 426 76.3
Os01g0588800 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D007725 5.6e-201 704.5 430 75.6
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 7.3e-201 704.1 431 76.1
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 1.2e-200 703.4 486 70.2
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 1.6e-200 703.0 489 69.5
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 2.1e-200 702.6 503 67.8
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 2.1e-200 702.6 490 71.0
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 2.1e-200 702.6 431 75.4
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 2.8e-200 702.2 490 69.0
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 3.6e-200 701.8 426 76.3
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 3.6e-200 701.8 491 69.9
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 6.1e-200 701.0 450 73.8
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 1.0e-199 700.3 489 70.8
HanXRQChr09g0265611 Helianthus annuus HOM05D001960 ORTHO05D007725 2.3e-199 699.1 488 71.3
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 4.0e-199 698.4 490 70.0
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 6.8e-199 697.6 539 64.7
Lsat_1_v5_gn_4_179920 Lactuca sativa HOM05D001960 ORTHO05D007725 8.9e-199 697.2 486 70.6
PGR083G0481 Punica granatum HOM05D001960 ORTHO05D007725 2.6e-198 695.7 492 70.5
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 5.8e-198 694.5 495 70.1
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 5.8e-198 694.5 421 75.5
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 7.5e-198 694.1 486 68.9
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 9.8e-198 693.7 428 76.4
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 1.3e-197 693.3 489 69.5
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 1.7e-197 693.0 489 69.5
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 3.7e-197 691.8 424 75.2
PSO832G0234 Papaver somniferum HOM05D001960 ORTHO05D007725 8.3e-197 690.6 496 69.4
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 2.4e-196 689.1 486 69.1
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 9.2e-196 687.2 431 75.4
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 1.6e-195 686.4 487 70.0
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 2.7e-195 685.6 459 71.0
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 6.0e-195 684.5 490 68.8
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 1.0e-194 683.7 444 73.4
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 3.9e-194 681.8 532 63.7
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 5.6e-193 677.9 414 82.1
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 5.6e-193 677.9 487 69.0
ClCG09G018410 Citrullus lanatus HOM05D001960 ORTHO05D007725 1.2e-192 676.8 526 64.8
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 4.7e-192 674.9 454 72.5
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 8.0e-192 674.1 476 67.9
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 1.1e-191 673.7 494 66.6
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 2.2e-189 666.0 467 68.3
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 6.0e-187 657.9 448 70.5
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 2.3e-186 656.0 448 70.3
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 3.3e-185 652.1 400 75.0
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 2.3e-183 646.0 405 74.3
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.7e-181 639.8 473 67.0
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 8.3e-181 637.5 375 78.4
ECA232G3528 Erigeron canadensis HOM05D001960 ORTHO05D007725 2.4e-180 636.0 375 78.1
Zm00001eb357440 Zea mays HOM05D001960 ORTHO05D007725 2.1e-179 632.9 494 64.2
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 5.1e-178 628.2 545 60.6
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 6.8e-175 617.8 410 72.0
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 3.0e-170 602.4 393 71.5
SEGI_03019 Sequoiadendron giganteum HOM05D001960 ORTHO05D007725 5.1e-170 601.7 475 61.1
vmacro05739 Vaccinium macrocarpon HOM05D001960 ORTHO05D007725 5.1e-170 601.7 468 64.7
PSO591G0496 Papaver somniferum HOM05D001960 ORTHO05D007725 3.3e-169 599.0 497 63.0
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 8.1e-168 594.3 488 62.3
ECA232G0063 Erigeron canadensis HOM05D001960 ORTHO05D007725 1.7e-165 586.6 375 73.9
Pp3c8_16780 Physcomitrium patens HOM05D001960 ORTHO05D007725 2.1e-160 569.7 503 56.3
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 6.2e-160 568.2 390 69.0
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 1.4e-159 567.0 340 76.2
unitig_747.g21836 Utricularia gibba HOM05D001960 ORTHO05D007725 5.4e-156 555.1 498 58.8
Mapoly0027s0012 Marchantia polymorpha HOM05D001960 ORTHO05D007725 6.7e-154 548.1 445 60.9
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 6.9e-151 538.1 346 74.6
C04p40510 Brassica napus HOM05D001960 ORTHO05D007725 8.4e-149 531.2 294 88.8
BolC4t25631H Brassica oleracea HOM05D001960 ORTHO05D007725 8.4e-149 531.2 294 88.8
AagrBONN_evm.TU.Sc2ySwM_368.2217 Anthoceros agrestis HOM05D001960 ORTHO05D007725 2.8e-144 516.2 455 56.3
C05p44890 Brassica napus HOM05D001960 ORTHO05D007725 1.8e-138 496.9 296 83.8
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 3.9e-138 495.7 326 72.1
C08p31240 Brassica napus HOM05D001960 ORTHO05D007725 3.0e-130 469.5 282 83.3
BcaC02g09250 Brassica carinata HOM05D001960 ORTHO05D007725 7.4e-129 464.9 261 88.5
BolC8t50105H Brassica oleracea HOM05D001960 ORTHO05D007725 8.2e-128 461.5 267 87.3
C08p24890 Brassica napus HOM05D001960 ORTHO05D007725 7.7e-126 454.9 291 80.8
SMO200G0063 Selaginella moellendorffii HOM05D001960 ORTHO05D007725 1.4e-119 434.1 391 55.2
Hma1.2p1_1232F.1_g268890 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 1.1e-116 424.5 256 75.8
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 1.8e-111 407.1 348 59.8
MCO09G443 Micromonas commoda HOM05D001960 ORTHO05D007725 4.2e-92 342.8 383 46.0
HPP92_022944 Vanilla planifolia HOM05D001960 ORTHO05D007725 4.0e-82 309.7 208 70.2
CBR_g40650 Chara braunii HOM05D001960 ORTHO05D007725 4.4e-81 306.2 333 46.8
Migut.K01334 Erythranthe guttata HOM05D001960 ORTHO05D007725 3.9e-77 293.1 235 66.0
Cre02.g096400 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D007725 2.1e-75 287.3 580 33.3
SHI22231 Sapria himalayana HOM05D001960 ORTHO05D007725 2.1e-67 260.8 247 52.6
Cfa026330 Carpinus fangiana HOM05D001960 ORTHO05D007725 2.8e-51 207.2 457 32.4
Dinv34987 Davidia involucrata HOM05D001960 ORTHO05D007725 3.9e-45 186.8 110 78.2
Actinidia23575 Actinidia chinensis HOM05D001960 ORTHO05D007725 6.2e-35 152.9 112 65.2
Hma1.2p1_1232F.1_g268870 Hydrangea macrophylla HOM05D001960 ORTHO05D014729 5.3e-34 149.8 100 68.0
Dinv06509 Davidia involucrata HOM05D001960 ORTHO05D014729 7.4e-28 129.4 74 78.4
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 9.6e-28 129.0 82 68.3
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 8.2e-27 125.9 74 85.1
C04p14730 Brassica napus HOM05D001960 ORTHO05D014930 3.1e-26 124.0 66 90.9
BcaC02g11495 Brassica carinata HOM05D001960 ORTHO05D014930 4.0e-26 123.6 65 92.3
BraA05t21956Z Brassica rapa HOM05D001960 ORTHO05D042754 5.3e-26 123.2 89 71.9
A05p31140 Brassica napus HOM05D001960 ORTHO05D042754 6.9e-26 122.9 66 92.4
A01p26160 Brassica napus HOM05D001960 ORTHO05D014930 9.0e-26 122.5 66 89.4
BraA02t06070Z Brassica rapa HOM05D001960 ORTHO05D014930 9.0e-26 122.5 66 89.4
BolC3t20150H Brassica oleracea HOM05D001960 ORTHO05D014930 1.2e-25 122.1 66 89.4
C07p16020 Brassica napus HOM05D001960 ORTHO05D014930 1.5e-25 121.7 67 88.1
BolC5t33816H Brassica oleracea HOM05D001960 ORTHO05D014930 2.6e-25 120.9 66 87.9
BcaC05g28941 Brassica carinata HOM05D001960 ORTHO05D014930 3.4e-25 120.6 65 89.2
C07p16060 Brassica napus HOM05D001960 ORTHO05D021151 4.5e-25 120.2 66 87.9
CDE05G0334 Ceratophyllum demersum HOM05D000115 ORTHO05D000645 6.3e-19 99.8 60 70.0
HPP92_017638 Vanilla planifolia HOM05D003031 ORTHO05D003371 2.2e-16 91.3 53 73.6
HPP92_003669 Vanilla planifolia HOM05D001960 ORTHO05D007725 6.7e-13 79.7 69 59.4
Medtr5g075800 Medicago truncatula HOM05D001960 ORTHO05D258834 6.9e-10 69.7 84 45.2
Dinv25076 Davidia involucrata HOM05D001960 ORTHO05D033473 3.2e-07 60.8 41 70.7
GSVIVG01021633001 Vitis vinifera HOM05D001960 ORTHO05D439898 5.5e-07 60.1 43 62.8
Actinidia27488 Actinidia chinensis HOM05D001960 ORTHO05D058277 7.2e-07 59.7 63 54.0


User provided reference genes

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