Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g30887 Brassica carinata HOM05D006813 ORTHO05D008657 1.2e-228 796.2 398 100.0
C07p38090 Brassica napus HOM05D006813 ORTHO05D008657 1.1e-213 746.5 403 95.3
BolC7t44331H Brassica oleracea HOM05D006813 ORTHO05D008657 1.1e-213 746.5 403 95.3
A06p40070 Brassica napus HOM05D006813 ORTHO05D008657 1.7e-211 739.2 404 95.3
BraA06t26922Z Brassica rapa HOM05D006813 ORTHO05D008657 1.7e-211 739.2 404 95.3
BcaC06g33677 Brassica carinata HOM05D006813 ORTHO05D008657 5.4e-210 734.2 404 94.1
Sp2g17800 Schrenkiella parvula HOM05D006813 ORTHO05D008657 1.5e-199 699.5 399 90.0
Thhalv10004355m.g Eutrema salsugineum HOM05D006813 ORTHO05D008657 7.8e-193 677.2 402 86.8
AL5G19100 Arabidopsis lyrata HOM05D006813 ORTHO05D008657 2.2e-187 659.1 397 84.1
AT3G29185 Arabidopsis thaliana HOM05D006813 ORTHO05D008657 2.9e-187 658.7 393 85.0
Aa31LG2G4040 Aethionema arabicum HOM05D006813 ORTHO05D008657 4.0e-173 611.7 404 77.7
CARHR152350 Cardamine hirsuta HOM05D006813 ORTHO05D008657 9.0e-165 583.9 405 75.8
THA.LOC104805490 Tarenaya hassleriana HOM05D006813 ORTHO05D008657 2.9e-163 578.9 408 73.8
TWI34G0739 Tripterygium wilfordii HOM05D006813 ORTHO05D008657 3.2e-146 522.3 402 65.4
TWI34G0213 Tripterygium wilfordii HOM05D006813 ORTHO05D008657 1.2e-145 520.4 402 65.7
Manes.02G049900 Manihot esculenta HOM05D006813 ORTHO05D008657 6.1e-145 518.1 380 68.7
Medtr6g013150 Medicago truncatula HOM05D006813 ORTHO05D008657 1.5e-143 513.5 371 70.4
CSS0034099 Camellia sinensis var. sinensis HOM05D006813 ORTHO05D008657 1.7e-142 510.0 361 69.3
Cfa007604 Carpinus fangiana HOM05D006813 ORTHO05D008657 1.7e-142 510.0 410 63.9
Thecc.04G088600 Theobroma cacao HOM05D006813 ORTHO05D008657 1.7e-142 510.0 390 65.4
CSS0013443 Camellia sinensis var. sinensis HOM05D006813 ORTHO05D008657 2.2e-142 509.6 385 66.2
Lalb_Chr02g0159111 Lupinus albus HOM05D006813 ORTHO05D008657 4.8e-142 508.4 345 70.7
Sabra04G0067300 Salix brachista HOM05D006813 ORTHO05D008657 4.8e-142 508.4 374 67.6
TAR371G1040 Trochodendron aralioides HOM05D006813 ORTHO05D008657 6.3e-142 508.1 352 69.6
Haze_14484 Corylus avellana HOM05D006813 ORTHO05D008657 1.1e-141 507.3 410 63.7
PGR004G2573 Punica granatum HOM05D006813 ORTHO05D008657 1.8e-141 506.5 365 69.0
Cc07_g03730 Coffea canephora HOM05D006813 ORTHO05D008657 2.4e-141 506.1 386 65.0
Nn4g23302 Nelumbo nucifera HOM05D006813 ORTHO05D008657 3.1e-141 505.8 404 64.4
QL02p085115 Quercus lobata HOM05D006813 ORTHO05D008657 3.1e-141 505.8 356 71.1
Potri.004G120900 Populus trichocarpa HOM05D006813 ORTHO05D008657 5.3e-141 505.0 374 67.1
Ciclev10013781m.g Citrus clementina HOM05D006813 ORTHO05D008657 2.0e-140 503.1 396 64.9
VMungo0464G0720 Vigna mungo HOM05D006813 ORTHO05D008657 2.0e-140 503.1 371 67.1
MSTRG.3341 Avicennia marina HOM05D006813 ORTHO05D008657 2.6e-140 502.7 352 69.9
arahy.Tifrunner.gnm1.ann1.DSSH0H Arachis hypogaea HOM05D006813 ORTHO05D008657 3.5e-140 502.3 348 68.7
arahy.Tifrunner.gnm1.ann1.GGC6H3 Arachis hypogaea HOM05D006813 ORTHO05D008657 3.5e-140 502.3 345 69.3
RcHm_v2.0_Chr2g0166981 Rosa chinensis HOM05D006813 ORTHO05D008657 2.2e-139 499.6 411 65.0
Sc14g0006120 Simmondsia chinensis HOM05D006813 ORTHO05D008657 2.2e-139 499.6 389 63.0
Nitab4.5_0000568g0240 Nicotiana tabacum HOM05D006813 ORTHO05D008657 3.8e-139 498.8 362 67.1
Glyma.19G026800 Glycine max HOM05D006813 ORTHO05D008657 6.5e-139 498.0 350 70.0
Gorai.012G051400 Gossypium raimondii HOM05D006813 ORTHO05D008657 8.5e-139 497.7 398 63.1
FvH4_6g47790 Fragaria vesca HOM05D006813 ORTHO05D008657 1.5e-138 496.9 416 63.9
FAN14G3538 Fragaria x ananassa HOM05D006813 ORTHO05D008657 1.5e-138 496.9 416 63.9
Gohir.A05G369200 Gossypium hirsutum HOM05D006813 ORTHO05D008657 1.9e-138 496.5 372 65.9
EL10Ac2g03036 Beta vulgaris HOM05D006813 ORTHO05D008657 3.2e-138 495.7 381 65.9
Gohir.D04G046200 Gossypium hirsutum HOM05D006813 ORTHO05D008657 3.2e-138 495.7 398 63.1
Nitab4.5_0001591g0010 Nicotiana tabacum HOM05D006813 ORTHO05D008657 3.2e-138 495.7 382 64.9
MD09G1056700 Malus domestica HOM05D006813 ORTHO05D008657 4.2e-138 495.4 371 67.7
AUR62034457 Chenopodium quinoa HOM05D006813 ORTHO05D008657 9.4e-138 494.2 351 68.9
Glyma.13G060100 Glycine max HOM05D006813 ORTHO05D008657 1.2e-137 493.8 397 63.5
Psat1g069960 Pisum sativum HOM05D006813 ORTHO05D008657 1.2e-137 493.8 370 65.4
Atru.chr8.345 Acer truncatum HOM05D006813 ORTHO05D008657 1.6e-137 493.4 397 63.2
Lj2g0012161 Lotus japonicus HOM05D006813 ORTHO05D008657 1.6e-137 493.4 392 64.0
Phvul.004G032400 Phaseolus vulgaris HOM05D006813 ORTHO05D008657 3.6e-137 492.3 366 66.7
Actinidia06110 Actinidia chinensis HOM05D006813 ORTHO05D008657 2.3e-136 489.6 391 63.2
ECA232G0359 Erigeron canadensis HOM05D006813 ORTHO05D008657 2.3e-136 489.6 386 63.0
CiPaw.03G021100 Carya illinoinensis HOM05D006813 ORTHO05D008657 3.9e-136 488.8 385 64.9
Solyc02g088350.4 Solanum lycopersicum HOM05D006813 ORTHO05D008657 3.9e-136 488.8 374 65.8
GSVIVG01011472001 Vitis vinifera HOM05D006813 ORTHO05D008657 3.9e-136 488.8 406 61.8
HanXRQChr09g0264041 Helianthus annuus HOM05D006813 ORTHO05D008657 5.2e-136 488.4 391 63.9
MD17G1054200 Malus domestica HOM05D006813 ORTHO05D008657 2.0e-135 486.5 422 61.6
SalBow1G5727 Salvia bowleyana HOM05D006813 ORTHO05D008657 2.0e-135 486.5 372 66.7
PGSC0003DMG400001435 Solanum tuberosum HOM05D006813 ORTHO05D008657 4.4e-135 485.3 374 65.2
Lsat_1_v5_gn_4_170001 Lactuca sativa HOM05D006813 ORTHO05D008657 7.4e-135 484.6 386 63.2
Sopen02g033040 Solanum pennellii HOM05D006813 ORTHO05D008657 7.4e-135 484.6 374 65.0
CAN.G206.184 Capsicum annuum HOM05D006813 ORTHO05D008657 9.7e-135 484.2 374 64.2
CsaV3_5G038340 Cucumis sativus L. HOM05D006813 ORTHO05D008657 9.7e-135 484.2 389 64.0
CANSAT64G1527 Cannabis sativa HOM05D006813 ORTHO05D008657 2.8e-134 482.6 423 59.3
MELO3C022015.2 Cucumis melo HOM05D006813 ORTHO05D008657 2.8e-134 482.6 389 63.2
Aqoxy3G03517 Aquilegia oxysepala HOM05D006813 ORTHO05D008657 6.3e-134 481.5 343 68.5
Carub.0005s0792 Capsella rubella HOM05D006813 ORTHO05D008657 6.3e-134 481.5 256 91.0
DCAR_025399 Daucus carota HOM05D006813 ORTHO05D008657 8.2e-134 481.1 348 65.2
SGA_v2.0_scaffold154G37082 Striga asiatica HOM05D006813 ORTHO05D008657 1.1e-133 480.7 363 66.1
Duzib264G0095 Durio zibethinus HOM05D006813 ORTHO05D008657 1.4e-133 480.3 362 66.3
Migut.K01297 Erythranthe guttata HOM05D006813 ORTHO05D008657 5.3e-133 478.4 392 62.8
ClCG11G004590 Citrullus lanatus HOM05D006813 ORTHO05D008657 1.2e-132 477.2 404 61.9
Hund13179 Selenicereus undatus HOM05D006813 ORTHO05D008657 3.5e-132 475.7 417 59.5
Rhsim10G0035200 Rhododendron simsii HOM05D006813 ORTHO05D008657 1.7e-131 473.4 345 66.4
MBI07_g46965_MAGBIO Magnolia biondii HOM05D006813 ORTHO05D008657 5.0e-131 471.9 355 65.4
PSO063G1088 Papaver somniferum HOM05D006813 ORTHO05D008657 2.5e-130 469.5 373 62.7
Actinidia01957 Actinidia chinensis HOM05D006813 ORTHO05D008657 1.2e-129 467.2 347 64.8
Peaxi162Scf00166g00933 Petunia axillaris HOM05D006813 ORTHO05D008657 1.6e-129 466.8 320 70.6
PSO063G3583 Papaver somniferum HOM05D006813 ORTHO05D008657 6.1e-129 464.9 346 66.2
HPP92_015887 Vanilla planifolia HOM05D006813 ORTHO05D008657 8.0e-129 464.5 386 59.6
AUR62018125 Chenopodium quinoa HOM05D006813 ORTHO05D008657 2.3e-128 463.0 323 70.9
Dinv33795 Davidia involucrata HOM05D006813 ORTHO05D008657 5.2e-128 461.8 311 71.1
Lju41A8T104 Lonicera japonica HOM05D006813 ORTHO05D008657 5.7e-127 458.4 405 60.0
Os03g0758900 Oryza sativa ssp. japonica HOM05D006813 ORTHO05D008657 5.7e-127 458.4 354 64.1
vmacro05678 Vaccinium macrocarpon HOM05D006813 ORTHO05D008657 5.7e-127 458.4 346 65.0
COL.COLO4_12242 Corchorus olitorius HOM05D006813 ORTHO05D008657 2.2e-126 456.4 319 69.3
CDE04G0700 Ceratophyllum demersum HOM05D006813 ORTHO05D008657 5.3e-125 451.8 364 61.0
Zm00001eb057930 Zea mays HOM05D006813 ORTHO05D008657 2.0e-124 449.9 346 65.9
ATR0730G176 Amborella trichopoda HOM05D006813 ORTHO05D008657 2.9e-123 446.0 348 63.5
unitig_0.g2631 Utricularia gibba HOM05D004633 ORTHO05D005503 4.8e-118 428.7 405 57.5
Oeu023718.1 Olea europaea HOM05D006813 ORTHO05D008657 1.2e-116 424.1 337 64.1
TPR.G26959 Trifolium pratense HOM05D006813 ORTHO05D008657 2.7e-116 422.9 298 70.1
Zm00001eb214510 Zea mays HOM05D006813 ORTHO05D008657 4.2e-114 415.6 382 56.5
Sed0010301 Sechium edule HOM05D006813 ORTHO05D008657 6.0e-100 368.6 248 71.8
Prupe.3G262000 Prunus persica HOM05D006813 ORTHO05D008657 1.3e-99 367.5 248 71.0
Dinv11496 Davidia involucrata HOM05D006813 ORTHO05D008657 3.3e-98 362.8 288 62.5
FAN05G4860 Fragaria x ananassa HOM05D006813 ORTHO05D008657 2.0e-95 353.6 363 55.9
SEGI_06128 Sequoiadendron giganteum HOM05D006813 ORTHO05D008657 1.9e-93 347.1 346 50.3
SalBow1G0723 Salvia bowleyana HOM05D006813 ORTHO05D008657 1.0e-91 341.3 277 64.3
MBI07_g25549_MAGBIO Magnolia biondii HOM05D006813 ORTHO05D008657 2.4e-85 320.1 284 58.1
Ca_04860_v3 Cicer arietinum L. HOM05D006813 ORTHO05D002040 1.6e-84 317.4 381 47.0
Haze_14493 Corylus avellana HOM05D006813 ORTHO05D008657 1.5e-79 300.8 207 70.0
Pp3c27_2000 Physcomitrium patens HOM05D006813 ORTHO05D008657 7.6e-79 298.5 361 44.0
Mapoly0015s0143 Marchantia polymorpha HOM05D006813 ORTHO05D008657 6.2e-73 278.9 362 42.0
BcaC06g30885 Brassica carinata HOM05D006813 ORTHO05D008657 1.7e-67 260.8 127 98.4
SMO347G0068 Selaginella moellendorffii HOM05D006813 ORTHO05D008657 6.6e-67 258.8 347 40.1
HPP92_015898 Vanilla planifolia HOM05D006813 ORTHO05D008657 1.8e-59 234.2 188 59.0
MD09G1057100 Malus domestica HOM05D006813 ORTHO05D008657 5.1e-35 152.9 158 52.5
AagrBONN_evm.TU.Sc2ySwM_117.3657 Anthoceros agrestis HOM05D006813 ORTHO05D008657 2.5e-34 150.6 176 46.6
FAN10G0034 Fragaria x ananassa HOM05D004096 ORTHO05D000898 3.7e-33 146.7 157 51.6
TPR.G26199 Trifolium pratense HOM05D006813 ORTHO05D001332 4.1e-32 143.3 101 70.3
SalBow1G7870 Salvia bowleyana HOM05D006813 ORTHO05D008657 1.3e-30 138.3 91 72.5
HPP92_015897 Vanilla planifolia HOM05D006813 ORTHO05D008657 7.9e-28 129.0 134 52.2
HanXRQChr08g0223741 Helianthus annuus HOM05D006813 ORTHO05D008657 1.2e-20 105.1 85 61.2
ECA247G1425 Erigeron canadensis HOM05D006813 ORTHO05D008657 1.1e-13 82.0 51 70.6
TAR633G2432 Trochodendron aralioides HOM05D006813 ORTHO05D414814 3.7e-09 67.0 95 41.1


User provided reference genes

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