Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g30874 Brassica carinata HOM05D008101 ORTHO05D010163 1.3e-34 149.4 88 100.0
BcaC06g33664 Brassica carinata HOM05D008101 ORTHO05D010163 4.5e-32 141.0 88 89.8
BcaC06g33665 Brassica carinata HOM05D008101 ORTHO05D010163 4.5e-32 141.0 88 89.8
C07p37940 Brassica napus HOM05D008101 ORTHO05D010163 4.5e-32 141.0 88 89.8
BolC7t44316H Brassica oleracea HOM05D008101 ORTHO05D010163 4.5e-32 141.0 88 89.8
BcaC03g17658 Brassica carinata HOM05D008101 ORTHO05D010163 3.8e-31 137.9 88 88.6
A06p40170 Brassica napus HOM05D008101 ORTHO05D010163 3.8e-31 137.9 88 88.6
BolC2t11721H Brassica oleracea HOM05D008101 ORTHO05D010163 3.8e-31 137.9 88 88.6
BraA06t26932Z Brassica rapa HOM05D008101 ORTHO05D010163 3.8e-31 137.9 88 88.6
C02p56620 Brassica napus HOM05D008101 ORTHO05D010163 3.9e-28 127.9 88 87.5
A02p36290 Brassica napus HOM05D008101 ORTHO05D010163 1.1e-27 126.3 88 86.4
BraA02t08628Z Brassica rapa HOM05D008101 ORTHO05D010163 1.1e-27 126.3 88 86.4
BolC2t11574H Brassica oleracea HOM05D008101 ORTHO05D010163 9.6e-27 123.2 88 81.8
AT3G29034 Arabidopsis thaliana HOM05D008101 ORTHO05D010163 2.8e-26 121.7 88 79.5
BcaC03g17547 Brassica carinata HOM05D008101 ORTHO05D010163 4.8e-26 120.9 88 80.7
C02p55260 Brassica napus HOM05D008101 ORTHO05D010163 4.8e-26 120.9 88 80.7
AL5G18900 Arabidopsis lyrata HOM05D008101 ORTHO05D010163 8.2e-26 120.2 88 77.3
BcaB07g30101 Brassica carinata HOM05D008101 ORTHO05D010163 1.1e-25 119.8 88 83.0
Sp2g17670 Schrenkiella parvula HOM05D008101 ORTHO05D010163 1.8e-25 119.0 88 85.2
Carub.0005s0764 Capsella rubella HOM05D008101 ORTHO05D010163 3.1e-25 118.2 89 77.5
CARHR152140 Cardamine hirsuta HOM05D008101 ORTHO05D010163 3.1e-25 118.2 88 76.1
Sp7g02370 Schrenkiella parvula HOM05D008101 ORTHO05D010163 3.3e-19 98.2 85 68.2
THA.LOC109116617 Tarenaya hassleriana HOM05D008101 ORTHO05D010163 1.6e-18 95.9 86 73.3
Carub.0007s3631 Capsella rubella HOM05D008101 ORTHO05D010163 3.7e-18 94.7 89 64.0
Aa31LG2G4160 Aethionema arabicum HOM05D008101 ORTHO05D010163 1.7e-15 85.9 57 77.2
Prupe.3G265300 Prunus persica HOM05D008101 ORTHO05D010163 2.2e-10 68.9 52 69.2
Glyma.13G062100 Glycine max HOM05D008101 ORTHO05D010163 6.3e-10 67.4 53 67.9
Gohir.D07G212050 Gossypium hirsutum HOM05D008101 ORTHO05D010163 1.1e-09 66.6 52 67.3
Gorai.001G239800 Gossypium raimondii HOM05D008101 ORTHO05D010163 1.1e-09 66.6 52 67.3
Lj2g0000476 Lotus japonicus HOM05D008101 ORTHO05D010163 1.1e-09 66.6 53 64.2
Gohir.A07G206000 Gossypium hirsutum HOM05D008101 ORTHO05D010163 1.4e-09 66.2 52 65.4
Potri.010G234200 Populus trichocarpa HOM05D008101 ORTHO05D010163 1.4e-09 66.2 52 69.2
Thecc.04G085600 Theobroma cacao HOM05D008101 ORTHO05D010163 1.4e-09 66.2 52 65.4
Sopen02g032840 Solanum pennellii HOM05D008101 ORTHO05D010163 4.1e-09 64.7 52 65.4
MD09G1053300 Malus domestica HOM05D008101 ORTHO05D010163 5.3e-09 64.3 48 70.8
Cc07_g03530 Coffea canephora HOM05D008101 ORTHO05D010163 6.9e-09 63.9 51 64.7
Medtr6g012640 Medicago truncatula HOM05D008101 ORTHO05D010163 9.1e-09 63.5 70 54.3
CAN.G206.165 Capsicum annuum HOM05D008101 ORTHO05D010163 1.2e-08 63.2 52 65.4
Solyc02g088130.1 Solanum lycopersicum HOM05D008101 ORTHO05D010163 2.6e-08 62.0 50 66.0
CSS0047461 Camellia sinensis var. sinensis HOM05D008101 ORTHO05D010163 4.5e-08 61.2 52 57.7
Dinv33773 Davidia involucrata HOM05D008101 ORTHO05D010163 5.9e-08 60.8 50 56.0
Migut.H00938 Erythranthe guttata HOM05D008101 ORTHO05D010163 5.9e-08 60.8 52 61.5
PGR083G0374 Punica granatum HOM05D008101 ORTHO05D010163 7.7e-08 60.5 52 61.5
Sed0001905 Sechium edule HOM05D008101 ORTHO05D010163 7.7e-08 60.5 52 59.6
Phvul.004G030000 Phaseolus vulgaris HOM05D008101 ORTHO05D010163 1.7e-07 59.3 53 58.5
CiPaw.03G024700 Carya illinoinensis HOM05D008101 ORTHO05D010163 2.2e-07 58.9 52 59.6
Manes.02G047600 Manihot esculenta HOM05D008101 ORTHO05D010163 3.8e-07 58.2 51 60.8
RcHm_v2.0_Chr2g0167541 Rosa chinensis HOM05D008101 ORTHO05D010163 6.5e-07 57.4 52 57.7
SalBow1G0549 Salvia bowleyana HOM05D008101 ORTHO05D010163 1.1e-06 56.6 52 61.5
SalBow1G6176 Salvia bowleyana HOM05D008101 ORTHO05D010163 1.1e-06 56.6 52 61.5
RcHm_v2.0_Chr2g0167501 Rosa chinensis HOM05D008101 ORTHO05D010163 1.4e-06 56.2 52 55.8
RcHm_v2.0_Chr2g0167591 Rosa chinensis HOM05D008101 ORTHO05D010163 2.5e-06 55.5 52 55.8
SalBow8G3752 Salvia bowleyana HOM05D008101 ORTHO05D010163 4.2e-06 54.7 52 59.6
Nn4g23220 Nelumbo nucifera HOM05D008101 ORTHO05D010163 5.5e-06 54.3 52 51.9
ClCG10G015220 Citrullus lanatus HOM05D008101 ORTHO05D010163 7.2e-06 53.9 48 62.5
Os04g0460350 Oryza sativa ssp. japonica HOM05D008101 ORTHO05D010163 7.2e-06 53.9 52 57.7


User provided reference genes

Program Settings