Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 0.0e+00 1487.2 782 100.0
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 0.0e+00 1416.4 783 95.4
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 0.0e+00 1416.4 783 95.4
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 0.0e+00 1415.2 784 95.4
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 0.0e+00 1412.9 784 95.3
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 0.0e+00 1412.9 784 95.3
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 0.0e+00 1372.8 791 91.8
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 0.0e+00 1356.3 791 91.0
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 0.0e+00 1303.9 795 86.8
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 0.0e+00 1239.9 782 83.8
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 0.0e+00 1227.6 782 83.4
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 0.0e+00 1215.7 782 83.0
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 0.0e+00 1200.3 782 81.6
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 0.0e+00 1194.9 787 81.1
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 0.0e+00 1192.2 787 81.1
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 0.0e+00 1187.9 787 80.8
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 0.0e+00 1180.2 783 80.3
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 0.0e+00 1151.3 792 78.8
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 0.0e+00 1150.2 783 79.8
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 0.0e+00 1125.2 787 75.6
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 0.0e+00 1112.8 794 74.3
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1112.4 790 75.1
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1110.9 786 75.2
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1090.9 802 72.6
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 0.0e+00 1089.7 786 72.6
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1088.6 788 72.8
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 0.0e+00 1084.7 755 76.0
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1083.2 785 73.2
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 0.0e+00 1080.5 785 74.4
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 0.0e+00 1080.1 767 73.9
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 0.0e+00 1079.7 790 73.4
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 0.0e+00 1079.3 785 73.8
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 0.0e+00 1078.5 787 73.4
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 0.0e+00 1077.8 778 73.0
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 5.3e-312 1074.7 785 74.0
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 5.3e-312 1074.7 788 73.1
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 5.3e-312 1073.9 787 72.7
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 5.3e-312 1073.9 791 73.3
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 5.3e-312 1073.5 785 73.9
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 1.4e-310 1069.3 800 71.5
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 5.3e-310 1067.4 789 72.1
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 6.9e-310 1067.0 787 72.9
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 1.2e-309 1066.2 785 73.5
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 1.5e-309 1065.8 786 73.3
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 7.6e-309 1063.5 785 72.9
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 4.9e-308 1060.8 794 72.0
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 4.9e-308 1060.8 803 71.4
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 6.5e-308 1060.4 779 72.9
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 6.5e-308 1060.4 783 72.2
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 1.1e-307 1059.7 857 69.0
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 2.5e-307 1058.5 787 72.2
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 1.2e-306 1056.2 833 68.8
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 1.6e-306 1055.8 779 72.7
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 1.3e-305 1052.7 786 72.4
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 3.9e-305 1051.2 792 71.2
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 1.9e-304 1048.9 793 71.6
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 5.7e-304 1047.3 794 70.5
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 5.7e-304 1047.3 791 70.8
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 7.4e-304 1047.0 786 72.0
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 3.7e-303 1044.6 784 70.4
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 1.1e-302 1043.1 789 70.8
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 2.4e-302 1042.0 776 72.0
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 4.1e-302 1041.2 793 71.0
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 7.6e-301 1036.9 796 70.1
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 3.8e-300 1034.6 780 71.2
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 6.5e-300 1033.9 784 69.6
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 4.6e-298 1027.7 835 67.4
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 2.3e-297 1025.4 793 70.2
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 3.9e-297 1024.6 794 69.6
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 2.8e-295 1018.5 785 70.3
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 2.9e-292 1008.4 775 68.8
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 5.0e-292 1007.7 792 68.8
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 1.1e-291 1006.5 779 68.3
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 9.4e-291 1003.4 645 83.3
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 1.6e-290 1002.7 793 68.1
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 2.1e-290 1002.3 776 69.1
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 4.7e-290 1001.1 661 78.5
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 1.1e-288 996.5 812 67.1
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 3.3e-288 995.0 797 68.6
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 3.3e-288 995.0 787 68.4
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 2.8e-287 991.9 785 67.9
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 3.1e-286 988.4 778 69.0
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 3.1e-286 988.4 784 66.5
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 3.1e-286 988.4 762 70.5
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 1.0e-284 983.4 783 66.2
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 1.0e-284 983.4 801 67.7
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 1.3e-284 983.0 795 66.2
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 5.0e-284 981.1 783 67.6
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 6.5e-284 980.7 794 65.7
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 1.9e-283 979.2 886 63.1
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 1.6e-282 976.1 788 66.9
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 2.6e-280 968.8 784 66.5
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 2.4e-278 962.2 787 66.5
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 9.1e-278 960.3 784 65.3
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 2.2e-276 955.7 788 65.0
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 3.8e-276 954.9 778 67.7
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 1.4e-273 946.4 635 77.0
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 2.0e-272 942.6 635 77.8
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 2.2e-271 939.1 782 65.5
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 6.3e-271 937.6 784 64.7
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 8.2e-271 937.2 635 77.2
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 1.7e-263 912.9 830 60.5
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 1.8e-262 909.4 794 63.5
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 8.6e-260 900.6 783 61.8
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 7.0e-254 880.9 780 62.9
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 7.0e-254 880.9 783 62.7
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 7.8e-253 877.5 794 59.9
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 5.2e-241 838.2 808 57.8
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 6.2e-234 814.7 766 56.8
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 1.3e-231 807.0 718 64.2
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 5.1e-228 795.0 804 56.0
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 2.5e-227 792.7 777 57.5
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 2.1e-205 719.9 667 61.0
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 2.8e-202 709.5 792 50.5
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 8.4e-191 671.4 481 74.2
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.4e-185 654.1 833 46.8
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.4e-185 654.1 833 46.8
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 3.2e-174 616.3 855 44.8
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 8.8e-172 608.2 819 46.0
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 6.5e-159 565.5 532 60.5
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 3.6e-157 559.7 401 76.3
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 1.0e-156 558.1 457 64.6
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.8e-156 557.4 644 50.2
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 4.8e-154 549.3 822 41.6
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 1.6e-152 544.3 574 54.4
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 3.8e-151 539.7 609 57.6
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 2.5e-150 537.0 432 66.0
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 4.2e-150 536.2 609 52.2
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 1.3e-138 498.0 617 53.5
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 1.4e-100 371.7 708 41.0
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 4.8e-93 346.7 466 49.1
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 6.7e-79 299.7 217 74.2
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 8.4e-74 282.7 758 30.7
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 7.9e-72 276.2 199 71.9
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 8.7e-71 272.7 783 33.2
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 7.4e-70 269.6 243 61.7
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 1.1e-68 265.8 189 72.5
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 1.8e-68 265.0 189 72.5
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 1.8e-68 265.0 189 72.5
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 1.0e-58 232.6 201 62.2
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 5.5e-49 200.3 563 32.5
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 2.0e-46 191.8 145 69.7
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 8.8e-39 166.4 109 70.6
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.8e-34 151.0 203 46.3
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 9.4e-33 146.4 85 82.4
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 8.0e-32 143.3 359 31.8
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 6.8e-31 140.2 129 60.5
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 3.4e-30 137.9 142 50.7
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 2.8e-29 134.8 80 73.8
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 3.7e-29 134.4 74 83.8
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 2.7e-27 128.3 75 72.0
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 2.7e-27 128.3 75 72.0
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 2.1e-24 118.6 75 82.7
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.7e-21 109.0 141 49.6
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.1e-17 96.3 108 45.4
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 1.2e-16 92.8 57 86.0
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 8.0e-16 90.1 60 70.0
BcaC04g23826 Brassica carinata HOM05D003991 ORTHO05D004883 1.0e-15 89.7 111 55.9
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.8e-15 89.0 107 47.7
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 2.3e-15 88.6 84 52.4
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 3.7e-13 81.3 53 69.8
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 1.6e-11 75.9 100 45.0
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 1.6e-11 75.9 52 80.8
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 3.9e-10 71.2 52 76.9
HPP92_027770 Vanilla planifolia HOM05D003991 ORTHO05D432268 1.1e-09 69.7 76 55.3
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 1.5e-09 69.3 51 74.5
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 4.3e-09 67.8 77 51.9
QL05p049558 Quercus lobata HOM05D003991 ORTHO05D004883 7.3e-09 67.0 65 61.5
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 9.5e-09 66.6 129 38.8
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 1.1e-07 63.2 106 40.6


User provided reference genes

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