Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g30834 Brassica carinata HOM05D001393 ORTHO05D007477 0.0e+00 1310.8 691 100.0
C07p38830 Brassica napus HOM05D001393 ORTHO05D007477 1.5e-287 992.6 703 80.4
BolC7t44402H Brassica oleracea HOM05D001393 ORTHO05D007477 2.3e-285 985.3 703 79.9
A06p39440 Brassica napus HOM05D001393 ORTHO05D007477 3.6e-278 961.4 703 77.7
BraA06t26859Z Brassica rapa HOM05D001393 ORTHO05D007477 3.6e-278 961.4 703 77.7
Sp2g18440 Schrenkiella parvula HOM05D001393 ORTHO05D007477 2.8e-206 722.6 739 59.4
Thhalv10003674m.g Eutrema salsugineum HOM05D001393 ORTHO05D007477 6.3e-198 694.9 730 59.5
AL8G20040 Arabidopsis lyrata HOM05D001393 ORTHO05D007477 8.3e-182 641.3 712 56.2
AT5G47940 Arabidopsis thaliana HOM05D001393 ORTHO05D007477 1.5e-170 604.0 719 54.9
Carub.0008s0749 Capsella rubella HOM05D001393 ORTHO05D007477 1.6e-169 600.5 710 54.1
CARHR184320 Cardamine hirsuta HOM05D001393 ORTHO05D007477 3.6e-153 546.2 689 54.3
Aa31LG11G7400 Aethionema arabicum HOM05D001393 ORTHO05D007477 1.5e-146 524.2 703 49.6
COL.COLO4_04862 Corchorus olitorius HOM05D001393 ORTHO05D007477 1.2e-71 275.4 744 34.7
Thecc.01G409700 Theobroma cacao HOM05D001393 ORTHO05D007477 1.2e-71 275.4 676 35.1
Ciclev10030722m.g Citrus clementina HOM05D001393 ORTHO05D007477 2.7e-71 274.2 721 34.7
Manes.10G141000 Manihot esculenta HOM05D001393 ORTHO05D007477 7.7e-71 272.7 555 37.8
Duzib133G0545 Durio zibethinus HOM05D001393 ORTHO05D007477 1.5e-69 268.5 722 33.8
Atru.chr11.2612 Acer truncatum HOM05D001393 ORTHO05D007477 5.5e-69 266.5 722 32.5
Gohir.D08G164900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 2.6e-66 257.7 582 39.0
Gorai.004G171900 Gossypium raimondii HOM05D001393 ORTHO05D007477 2.6e-66 257.7 584 36.6
Cpa.g.sc125.11 Carica papaya HOM05D001393 ORTHO05D007477 3.4e-66 257.3 666 34.5
Potri.001G265100 Populus trichocarpa HOM05D001393 ORTHO05D007477 2.2e-65 254.6 750 31.7
Prupe.2G015000 Prunus persica HOM05D001393 ORTHO05D007477 2.8e-65 254.2 747 31.9
Cfa010777 Carpinus fangiana HOM05D001393 ORTHO05D007477 3.7e-65 253.8 511 38.7
PGR044G2234 Punica granatum HOM05D001393 ORTHO05D007477 1.8e-64 251.5 511 35.6
FAN03G3510 Fragaria x ananassa HOM05D001393 ORTHO05D007477 3.1e-64 250.8 687 33.5
FAN06G3336 Fragaria x ananassa HOM05D001393 ORTHO05D007477 5.4e-64 250.0 698 33.0
FvH4_7g01170 Fragaria vesca HOM05D001393 ORTHO05D007477 7.0e-64 249.6 698 33.0
Gohir.A08G143900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 1.6e-63 248.4 585 36.6
QL04p008271 Quercus lobata HOM05D001393 ORTHO05D007477 2.7e-63 247.7 719 32.8
GSVIVG01032121001 Vitis vinifera HOM05D001393 ORTHO05D007477 1.7e-62 245.0 689 33.2
Eucgr.J01280 Eucalyptus grandis HOM05D001393 ORTHO05D007477 5.0e-62 243.4 500 36.2
Dinv09348 Davidia involucrata HOM05D001393 ORTHO05D007477 7.2e-61 239.6 548 34.9
CiPaw.14G000700 Carya illinoinensis HOM05D001393 ORTHO05D007477 9.5e-61 239.2 688 34.2
MD02G1309200 Malus domestica HOM05D001393 ORTHO05D007477 1.2e-60 238.8 587 34.8
FAN03G1765 Fragaria x ananassa HOM05D001393 ORTHO05D007477 2.8e-60 237.7 710 32.4
Sabra16G0162900 Salix brachista HOM05D001393 ORTHO05D007477 6.1e-60 236.5 757 31.0
arahy.Tifrunner.gnm1.ann1.S6CP9J Arachis hypogaea HOM05D001393 ORTHO05D007477 2.3e-59 234.6 678 31.6
vmacro13675 Vaccinium macrocarpon HOM05D001393 ORTHO05D007477 1.2e-58 232.3 548 35.2
RcHm_v2.0_Chr1g0316471 Rosa chinensis HOM05D001393 ORTHO05D007477 1.5e-58 231.9 705 31.1
arahy.Tifrunner.gnm1.ann1.C4Q3NJ Arachis hypogaea HOM05D001393 ORTHO05D007477 3.4e-58 230.7 678 31.4
FAN01G2686 Fragaria x ananassa HOM05D001393 ORTHO05D007477 4.4e-58 230.3 698 31.9
Migut.N01605 Erythranthe guttata HOM05D001393 ORTHO05D007477 5.7e-58 229.9 518 35.5
Phvul.011G009600 Phaseolus vulgaris HOM05D001393 ORTHO05D007477 1.4e-56 225.3 731 32.0
TWI73G0713 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 3.5e-55 220.7 599 31.9
CSS0038724 Camellia sinensis var. sinensis HOM05D001393 ORTHO05D007477 7.8e-55 219.5 600 32.7
CANSAT80G1121 Cannabis sativa HOM05D001393 ORTHO05D007477 1.0e-54 219.2 667 31.6
Actinidia21547 Actinidia chinensis HOM05D001393 ORTHO05D007477 1.7e-54 218.4 661 33.0
HanXRQChr09g0251311 Helianthus annuus HOM05D001393 ORTHO05D007477 5.0e-54 216.9 493 34.7
Ca_19581_v3 Cicer arietinum L. HOM05D001393 ORTHO05D007477 9.5e-53 212.6 702 30.8
VMungo1127G2137 Vigna mungo HOM05D001393 ORTHO05D007477 9.5e-53 212.6 716 30.6
PSO384G0142 Papaver somniferum HOM05D001393 ORTHO05D007477 4.7e-52 210.3 349 39.3
PSO339G5226 Papaver somniferum HOM05D001393 ORTHO05D007477 2.3e-51 208.0 350 38.6
Sed0015725 Sechium edule HOM05D001393 ORTHO05D007477 1.2e-50 205.7 691 31.3
TWI09G0484 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 1.2e-50 205.7 499 34.7
AUR62023073 Chenopodium quinoa HOM05D001393 ORTHO05D007477 2.6e-50 204.5 652 31.0
AUR62009391 Chenopodium quinoa HOM05D001393 ORTHO05D007477 3.2e-48 197.6 479 33.8
Potri.009G060000 Populus trichocarpa HOM05D001393 ORTHO05D007477 4.1e-48 197.2 658 30.4
SGA_v2.0_scaffold5G02964 Striga asiatica HOM05D001393 ORTHO05D007477 5.4e-48 196.8 582 31.3
CsaV3_7G030970 Cucumis sativus L. HOM05D001393 ORTHO05D007477 9.2e-48 196.1 523 35.2
MD07G1012500 Malus domestica HOM05D001393 ORTHO05D007477 3.5e-47 194.1 621 30.4
MELO3C023559.2 Cucumis melo HOM05D001393 ORTHO05D007477 4.6e-47 193.7 476 34.5
Lj3g0000057 Lotus japonicus HOM05D001393 ORTHO05D007477 4.6e-47 193.7 719 31.4
Psat7g196360 Pisum sativum HOM05D001393 ORTHO05D007477 4.6e-47 193.7 579 31.8
Glyma.09G228900 Glycine max HOM05D001393 ORTHO05D007477 6.0e-47 193.4 730 28.8
Glyma.12G007700 Glycine max HOM05D001393 ORTHO05D007477 7.8e-47 193.0 737 28.5
Sc11g0009120 Simmondsia chinensis HOM05D001393 ORTHO05D007477 7.8e-47 193.0 669 31.1
Medtr4g037495 Medicago truncatula HOM05D001393 ORTHO05D007477 1.0e-46 192.6 718 29.9
Nn2g15307 Nelumbo nucifera HOM05D001393 ORTHO05D007477 1.0e-46 192.6 670 28.2
TPR.G3660 Trifolium pratense HOM05D001393 ORTHO05D007477 1.7e-46 191.8 713 28.5
EL10Ac2g04339 Beta vulgaris HOM05D001393 ORTHO05D007477 2.3e-46 191.4 696 30.0
Cc02_g28120 Coffea canephora HOM05D001393 ORTHO05D007477 2.3e-46 191.4 360 37.5
TAR623G0231 Trochodendron aralioides HOM05D001393 ORTHO05D007477 2.3e-46 191.4 500 34.0
ClCG09G004070 Citrullus lanatus HOM05D001393 ORTHO05D007477 3.0e-46 191.0 681 30.5
Solyc11g007060.2 Solanum lycopersicum HOM05D001393 ORTHO05D007477 3.0e-46 191.0 518 31.3
Sopen11g002980 Solanum pennellii HOM05D001393 ORTHO05D007477 3.0e-46 191.0 518 31.5
MSTRG.28063 Avicennia marina HOM05D001393 ORTHO05D007477 3.9e-46 190.7 489 32.9
SalBow7G4183 Salvia bowleyana HOM05D001393 ORTHO05D007477 3.3e-45 187.6 608 30.6
PGSC0003DMG401023992 Solanum tuberosum HOM05D001393 ORTHO05D007477 3.3e-45 187.6 660 28.8
Dinv43433 Davidia involucrata HOM05D001393 ORTHO05D007477 2.8e-44 184.5 243 45.7
MBI04_g36081_MAGBIO Magnolia biondii HOM05D001393 ORTHO05D007477 4.7e-44 183.7 528 30.3
Aqoxy1G00280 Aquilegia oxysepala HOM05D001393 ORTHO05D007477 6.2e-44 183.3 559 30.4
SalBow6G6124 Salvia bowleyana HOM05D001393 ORTHO05D007477 8.0e-44 183.0 487 32.9
Lsat_1_v5_gn_1_106561 Lactuca sativa HOM05D001393 ORTHO05D007477 4.4e-42 177.2 458 32.3
DCAR_029678 Daucus carota HOM05D001393 ORTHO05D007477 1.3e-41 175.6 520 29.8
Lalb_Chr19g0140311 Lupinus albus HOM05D001393 ORTHO05D007477 2.9e-41 174.5 732 27.5
CAN.G1513.5 Capsicum annuum HOM05D001393 ORTHO05D007477 4.9e-41 173.7 778 26.1
Oeu049495.1 Olea europaea HOM05D001393 ORTHO05D007477 2.7e-39 167.9 640 27.5
Hund21482 Selenicereus undatus HOM05D001393 ORTHO05D007477 1.0e-38 166.0 541 29.6
Zm00001eb107220 Zea mays HOM05D001393 ORTHO05D007477 2.3e-38 164.9 371 32.1
Os07g0569000 Oryza sativa ssp. japonica HOM05D001393 ORTHO05D007477 5.1e-38 163.7 613 29.0
Peaxi162Scf00152g01336 Petunia axillaris HOM05D001393 ORTHO05D007477 6.6e-38 163.3 391 33.2
MSTRG.5028 Avicennia marina HOM05D001393 ORTHO05D007477 4.3e-37 160.6 552 30.1
Nitab4.5_0000001g0230 Nicotiana tabacum HOM05D001393 ORTHO05D007477 7.3e-37 159.8 678 27.1
Nitab4.5_0001761g0330 Nicotiana tabacum HOM05D001393 ORTHO05D007477 4.0e-35 154.1 705 26.4
CDE05G0268 Ceratophyllum demersum HOM05D001393 ORTHO05D007477 5.2e-35 153.7 507 31.6
Zm00001eb324710 Zea mays HOM05D001393 ORTHO05D007477 5.2e-35 153.7 561 28.3
ATR0332G069 Amborella trichopoda HOM05D001393 ORTHO05D007477 7.5e-34 149.8 503 30.0
Duzib138G1437 Durio zibethinus HOM05D001393 ORTHO05D007477 1.3e-33 149.1 457 32.4
Sabra09G0044200 Salix brachista HOM05D001393 ORTHO05D007477 3.7e-33 147.5 577 27.4
ECA248G1228 Erigeron canadensis HOM05D001393 ORTHO05D007477 3.2e-32 144.4 363 32.8
HPP92_015712 Vanilla planifolia HOM05D001393 ORTHO05D007477 1.8e-27 128.6 437 27.5
HPP92_026649 Vanilla planifolia HOM05D001393 ORTHO05D007477 4.0e-27 127.5 437 27.7
unitig_578.g16692 Utricularia gibba HOM05D001393 ORTHO05D007477 8.4e-25 119.8 492 27.8
Ah.10g038800 Amaranthus hybridus HOM05D001393 ORTHO05D007477 7.3e-21 106.7 550 26.4
FAN10G3273 Fragaria x ananassa HOM05D001393 ORTHO05D007477 1.4e-19 102.4 109 50.5
Lj9A633T62 Lonicera japonica HOM05D001393 ORTHO05D007477 2.2e-17 95.1 353 28.9
Eucgr.J01288 Eucalyptus grandis HOM05D001393 ORTHO05D007477 7.3e-13 80.1 148 32.4
SEGI_24281 Sequoiadendron giganteum HOM05D000890 ORTHO05D007477 2.4e-08 65.1 125 32.8
SEGI_29291 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 9.3e-08 63.2 429 22.6
Pp3c5_15230 Physcomitrium patens HOM05D001393 ORTHO05D007477 1.2e-07 62.8 208 26.0


User provided reference genes

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