Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 1.2e-211 739.6 360 100.0
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 2.4e-209 731.9 360 98.9
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 2.4e-209 731.9 360 98.9
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 2.7e-208 728.4 360 98.3
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 1.0e-207 726.5 360 98.3
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 2.5e-198 695.3 360 93.9
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 2.5e-198 695.3 360 93.9
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 3.3e-198 694.9 360 93.9
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 7.1e-193 677.2 360 91.9
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 1.2e-192 676.4 360 90.8
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 3.5e-192 674.9 360 90.8
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 2.1e-189 665.6 363 89.5
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 2.5e-182 642.1 363 85.7
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 1.8e-172 609.4 366 79.5
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 1.0e-170 603.6 365 80.8
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 1.3e-170 603.2 364 81.3
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 1.3e-170 603.2 361 80.6
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 8.4e-170 600.5 362 80.1
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 1.9e-169 599.4 364 80.2
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 1.9e-169 599.4 364 79.4
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 9.3e-169 597.0 369 78.0
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 2.1e-168 595.9 365 80.3
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 2.1e-168 595.9 369 78.3
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 7.9e-168 594.0 360 78.9
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 7.9e-168 594.0 362 79.0
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 1.0e-167 593.6 364 79.4
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 1.8e-167 592.8 364 78.8
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 2.3e-167 592.4 363 78.5
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 3.0e-167 592.0 362 78.2
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 3.0e-167 592.0 350 80.3
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 5.1e-167 591.3 367 78.5
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 6.7e-167 590.9 360 78.9
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 6.7e-167 590.9 362 77.9
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 1.5e-166 589.7 359 79.9
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 2.5e-166 589.0 357 79.0
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 2.5e-166 589.0 359 78.8
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 3.3e-166 588.6 356 79.5
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 7.4e-166 587.4 362 78.2
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 9.6e-166 587.0 362 78.5
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 1.6e-165 586.3 362 77.9
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.1e-165 585.9 357 79.6
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 2.1e-165 585.9 359 77.7
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 2.1e-165 585.9 363 78.2
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 2.8e-165 585.5 360 79.7
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 2.8e-165 585.5 358 78.5
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 4.8e-165 584.7 356 80.1
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 4.8e-165 584.7 356 80.1
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 6.2e-165 584.3 356 80.1
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 8.2e-165 583.9 356 78.7
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.1e-164 583.6 356 80.1
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 1.4e-164 583.2 354 79.4
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 1.4e-164 583.2 356 79.2
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 2.4e-164 582.4 356 80.3
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 2.4e-164 582.4 355 80.3
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 5.3e-164 581.3 356 79.5
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 9.0e-164 580.5 356 78.7
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.2e-163 580.1 367 77.4
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 1.5e-163 579.7 356 78.9
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.5e-163 579.7 367 77.1
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.5e-163 579.7 367 77.1
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 2.0e-163 579.3 360 78.3
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.0e-163 579.3 356 79.5
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 2.0e-163 579.3 365 76.4
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 3.4e-163 578.6 354 79.1
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 4.5e-163 578.2 362 76.0
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 4.5e-163 578.2 371 76.5
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 5.8e-163 577.8 356 78.9
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 1.0e-162 577.0 356 78.1
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 2.2e-162 575.9 357 79.0
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 2.9e-162 575.5 387 73.6
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 6.5e-162 574.3 362 76.5
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 8.4e-162 573.9 362 76.2
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.9e-161 572.8 356 79.2
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 1.9e-161 572.8 353 77.9
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 2.5e-161 572.4 358 77.1
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 2.5e-161 572.4 369 73.7
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 3.2e-161 572.0 358 78.2
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 9.3e-161 570.5 360 75.3
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 1.2e-160 570.1 365 76.4
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 3.5e-160 568.5 353 78.8
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 4.6e-160 568.2 356 77.5
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 1.8e-159 566.2 369 72.9
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 1.8e-159 566.2 354 77.1
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 2.3e-159 565.8 358 76.8
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 1.1e-158 563.5 389 72.2
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.9e-158 562.8 356 75.8
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 3.3e-158 562.0 362 75.7
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 1.8e-156 556.2 365 72.3
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 1.5e-155 553.1 360 75.0
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 2.0e-155 552.7 355 74.6
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 2.9e-154 548.9 355 74.4
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 3.8e-154 548.5 366 73.2
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 2.5e-153 545.8 440 64.3
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.1e-152 542.7 448 63.4
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 2.0e-150 536.2 359 72.1
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 7.4e-150 534.3 412 66.5
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 1.3e-149 533.5 330 77.9
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 9.1e-148 527.3 360 70.0
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 1.5e-147 526.6 360 70.3
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 1.0e-146 523.9 357 69.7
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 3.8e-146 521.9 376 67.6
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 2.1e-144 516.2 360 69.2
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 2.7e-144 515.8 350 70.9
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 6.1e-144 514.6 354 68.4
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 1.0e-143 513.8 360 68.1
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 2.3e-143 512.7 357 68.1
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 2.0e-142 509.6 456 57.5
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 5.7e-142 508.1 387 68.2
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 6.3e-141 504.6 363 65.0
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 8.2e-141 504.2 353 66.3
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 4.1e-140 501.9 360 64.7
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 5.3e-140 501.5 352 67.3
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 2.3e-135 486.1 272 85.7
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 2.6e-134 482.6 520 51.0
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 7.7e-123 444.5 253 83.0
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 2.9e-122 442.6 385 57.7
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 1.5e-121 440.3 344 66.3
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 2.7e-120 436.0 270 77.4
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 1.8e-111 406.8 273 72.2
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 1.8e-103 380.2 345 56.5
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 2.6e-102 376.3 241 71.4
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.3e-101 374.0 348 54.6
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 1.9e-100 370.2 380 49.7
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 1.9e-84 317.0 223 67.3
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 1.5e-81 307.4 197 76.1
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 9.6e-81 304.7 271 59.8
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 5.4e-76 288.9 164 84.8
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 5.1e-74 282.3 180 73.3
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 9.6e-73 278.1 182 75.3
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 6.2e-72 275.4 163 81.0
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 2.4e-71 273.5 180 72.2
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 9.9e-70 268.1 347 45.8
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 2.5e-57 226.9 174 60.9
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 1.2e-51 208.0 118 83.1
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 4.6e-43 179.5 106 77.4
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 1.1e-41 174.9 171 55.0
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 7.9e-35 152.1 105 74.3
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 2.3e-34 150.6 94 78.7
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 3.0e-26 123.6 177 43.5
Oeu039101.1 Olea europaea HOM05D000288 ORTHO05D000173 5.3e-23 112.8 88 63.6
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 1.5e-20 104.8 112 53.6
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 1.8e-18 97.8 55 78.2
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 4.0e-18 96.7 77 62.3
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 3.3e-17 93.6 232 28.9
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 1.8e-15 87.8 62 61.3
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 7.7e-14 82.4 83 51.8
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 1.7e-13 81.3 72 63.9
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 8.5e-13 79.0 67 55.2
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 1.7e-08 64.7 74 48.6
Oeu000043.1 Olea europaea HOM05D000206 ORTHO05D000232 1.8e-07 61.2 287 22.3
Migut.B01562 Erythranthe guttata HOM05D000206 ORTHO05D000232 2.0e-06 57.8 291 24.1
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 2.7e-06 57.4 33 78.8
arahy.Tifrunner.gnm1.ann1.81AB3J Arachis hypogaea HOM05D000001 ORTHO05D084391 7.7e-06 55.8 43 55.8


User provided reference genes

Program Settings