Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g30805 Brassica carinata HOM05D006455 ORTHO05D008098 1.2e-281 972.6 515 100.0
BraA06t26837Z Brassica rapa HOM05D006455 ORTHO05D008098 1.3e-253 879.4 519 90.2
A06p39230 Brassica napus HOM05D006455 ORTHO05D008098 5.3e-250 867.5 518 89.6
BcaC06g30808 Brassica carinata HOM05D006455 ORTHO05D008098 1.1e-247 859.8 517 88.8
BolC7t44431H Brassica oleracea HOM05D006455 ORTHO05D008098 1.1e-247 859.8 520 88.8
C07p39110 Brassica napus HOM05D006455 ORTHO05D008098 1.4e-247 859.4 517 88.6
Sp2g18700 Schrenkiella parvula HOM05D006455 ORTHO05D008098 1.3e-240 836.3 516 83.1
CARHR183890 Cardamine hirsuta HOM05D006455 ORTHO05D008098 7.0e-226 787.3 515 80.8
AT5G48340 Arabidopsis thaliana HOM05D006455 ORTHO05D008098 3.8e-224 781.6 515 80.0
AL8G21110 Arabidopsis lyrata HOM05D006455 ORTHO05D008098 5.5e-223 777.7 517 80.5
Carub.0008s0792 Capsella rubella HOM05D006455 ORTHO05D008098 1.5e-220 769.6 519 79.0
Thhalv10003907m.g Eutrema salsugineum HOM05D006455 ORTHO05D008098 1.5e-212 743.0 490 80.2
Aa31LG5G9090 Aethionema arabicum HOM05D006455 ORTHO05D008098 6.8e-205 717.6 508 76.2
Thecc.01G205700 Theobroma cacao HOM05D006455 ORTHO05D008098 1.1e-151 540.8 514 54.9
Haze_08072 Corylus avellana HOM05D006455 ORTHO05D008098 1.5e-151 540.4 515 55.9
Cfa012584 Carpinus fangiana HOM05D006455 ORTHO05D008098 2.5e-151 539.7 515 55.7
TAR362G0985 Trochodendron aralioides HOM05D006455 ORTHO05D008098 1.4e-149 533.9 514 54.7
Gohir.A11G144500 Gossypium hirsutum HOM05D006455 ORTHO05D008098 4.0e-149 532.3 508 54.5
Gorai.007G161800 Gossypium raimondii HOM05D006455 ORTHO05D008098 3.4e-148 529.3 508 54.1
Manes.12G057502 Manihot esculenta HOM05D006455 ORTHO05D008098 4.5e-148 528.9 517 54.7
Ciclev10014895m.g Citrus clementina HOM05D006455 ORTHO05D008098 7.6e-148 528.1 515 56.3
GSVIVG01001915001 Vitis vinifera HOM05D006455 ORTHO05D008098 7.6e-148 528.1 516 53.5
Manes.12G057904 Manihot esculenta HOM05D006455 ORTHO05D008098 1.3e-147 527.3 517 54.5
TWI75G0274 Tripterygium wilfordii HOM05D006455 ORTHO05D008098 2.1e-145 520.0 517 51.6
CiPaw.12G071600 Carya illinoinensis HOM05D006455 ORTHO05D008098 1.8e-144 516.9 517 53.2
Manes.12G057700 Manihot esculenta HOM05D006455 ORTHO05D008098 3.3e-143 512.7 517 53.6
Manes.12G057901 Manihot esculenta HOM05D006455 ORTHO05D008098 3.3e-143 512.7 517 53.6
Atru.chr6.3495 Acer truncatum HOM05D006455 ORTHO05D008098 2.8e-142 509.6 517 56.5
Rhsim13G0055500 Rhododendron simsii HOM05D006455 ORTHO05D008098 5.3e-141 505.4 480 54.8
COL.COLO4_29922 Corchorus olitorius HOM05D006455 ORTHO05D008098 5.8e-140 501.9 526 51.7
CsaV3_3G001300 Cucumis sativus L. HOM05D006455 ORTHO05D008098 1.7e-139 500.4 521 49.3
Eucgr.K02350 Eucalyptus grandis HOM05D006455 ORTHO05D008098 8.4e-139 498.0 518 53.3
Cpa.g.sc8.27 Carica papaya HOM05D006455 ORTHO05D008098 5.5e-138 495.4 498 56.2
PGR044G2428 Punica granatum HOM05D006455 ORTHO05D008098 6.0e-137 491.9 514 52.1
Migut.D00764 Erythranthe guttata HOM05D006455 ORTHO05D008098 3.0e-136 489.6 515 52.4
Nn1g09557 Nelumbo nucifera HOM05D006455 ORTHO05D008098 1.5e-135 487.3 516 51.0
Prupe.2G049600 Prunus persica HOM05D006455 ORTHO05D008098 1.3e-134 484.2 514 48.8
ECA248G0009 Erigeron canadensis HOM05D006455 ORTHO05D008098 8.2e-134 481.5 516 52.3
QL12p000818 Quercus lobata HOM05D006455 ORTHO05D008098 5.3e-133 478.8 496 51.8
AUR62028628 Chenopodium quinoa HOM05D006455 ORTHO05D008098 2.0e-132 476.9 513 49.7
MD02G1270700 Malus domestica HOM05D006455 ORTHO05D008098 2.0e-132 476.9 511 48.3
Nitab4.5_0006514g0010 Nicotiana tabacum HOM05D006455 ORTHO05D008098 2.0e-132 476.9 515 50.9
RcHm_v2.0_Chr7g0228451 Rosa chinensis HOM05D006455 ORTHO05D008098 2.6e-132 476.5 513 51.3
CSS0002127 Camellia sinensis var. sinensis HOM05D006455 ORTHO05D008098 3.4e-132 476.1 435 55.2
HanXRQChr01g0014041 Helianthus annuus HOM05D006455 ORTHO05D008098 7.6e-132 474.9 515 49.7
Lj1A106T21 Lonicera japonica HOM05D006455 ORTHO05D008098 1.0e-131 474.6 501 52.7
Aqoxy2G04132 Aquilegia oxysepala HOM05D006455 ORTHO05D008098 2.2e-131 473.4 515 51.3
FvH4_5g32260 Fragaria vesca HOM05D006455 ORTHO05D008098 4.9e-131 472.2 509 48.9
HanXRQChr01g0013871 Helianthus annuus HOM05D006455 ORTHO05D008098 1.1e-130 471.1 511 49.5
Sopen09g013040 Solanum pennellii HOM05D006455 ORTHO05D008098 1.1e-130 471.1 509 49.7
ClCG10G001240 Citrullus lanatus HOM05D006455 ORTHO05D008098 1.9e-130 470.3 497 52.7
Hund02815 Selenicereus undatus HOM05D006455 ORTHO05D008098 7.1e-130 468.4 517 47.6
FAN18G4165 Fragaria x ananassa HOM05D006455 ORTHO05D008098 1.6e-129 467.2 509 48.5
MELO3C013818.2 Cucumis melo HOM05D006455 ORTHO05D008098 2.1e-129 466.8 509 50.7
Lsat_1_v5_gn_5_176300 Lactuca sativa HOM05D006455 ORTHO05D008098 6.1e-129 465.3 523 47.8
Nitab4.5_0000077g0170 Nicotiana tabacum HOM05D006455 ORTHO05D008098 1.3e-128 464.2 511 50.5
Potri.014G174300 Populus trichocarpa HOM05D006455 ORTHO05D008098 1.3e-128 464.2 519 52.2
MSTRG.18514 Avicennia marina HOM05D006455 ORTHO05D008098 1.8e-128 463.8 513 49.3
FAN13G0315 Fragaria x ananassa HOM05D006455 ORTHO05D008098 2.3e-128 463.4 510 48.2
CANSAT21G2240 Cannabis sativa HOM05D006455 ORTHO05D008098 3.0e-128 463.0 515 48.2
AUR62008053 Chenopodium quinoa HOM05D006455 ORTHO05D008098 5.1e-128 462.2 517 46.8
Lalb_Chr16g0391751 Lupinus albus HOM05D006455 ORTHO05D008098 1.9e-127 460.3 514 49.2
Sc05g0001610 Simmondsia chinensis HOM05D006455 ORTHO05D008098 7.4e-127 458.4 509 48.1
Sed0000077 Sechium edule HOM05D006455 ORTHO05D008098 1.3e-126 457.6 499 49.7
Cc04_g10320 Coffea canephora HOM05D006455 ORTHO05D008098 2.2e-126 456.8 516 48.1
SGA_v2.0_scaffold158G37512 Striga asiatica HOM05D006455 ORTHO05D008098 2.4e-125 453.4 532 46.4
Sabra14G0133600 Salix brachista HOM05D006455 ORTHO05D008098 1.0e-123 448.0 520 51.3
TPR.G31161 Trifolium pratense HOM05D006455 ORTHO05D008098 1.4e-122 444.1 517 48.7
FAN08G0013 Fragaria x ananassa HOM05D006455 ORTHO05D004776 5.5e-122 442.2 492 49.6
PSO210G7796 Papaver somniferum HOM05D006455 ORTHO05D008098 1.0e-120 438.0 511 50.3
Lj4g0021895 Lotus japonicus HOM05D006455 ORTHO05D008098 1.4e-120 437.6 517 48.2
Psat4g108080 Pisum sativum HOM05D006455 ORTHO05D008098 2.5e-119 433.3 516 45.0
vmacro02844 Vaccinium macrocarpon HOM05D006455 ORTHO05D008098 4.3e-119 432.6 503 50.7
Peaxi162Scf00315g00814 Petunia axillaris HOM05D006455 ORTHO05D008098 1.3e-118 431.0 493 49.5
Solyc09g020150.4 Solanum lycopersicum HOM05D006455 ORTHO05D008098 1.3e-118 431.0 492 48.8
VMungo0251G3325 Vigna mungo HOM05D006455 ORTHO05D008098 1.1e-117 427.9 516 49.6
arahy.Tifrunner.gnm1.ann1.U8H9H1 Arachis hypogaea HOM05D006455 ORTHO05D008098 2.4e-117 426.8 496 47.2
SHI10210 Sapria himalayana HOM05D006455 ORTHO05D008098 2.4e-117 426.8 523 50.7
Glyma.16G105200 Glycine max HOM05D006455 ORTHO05D008098 4.1e-117 426.0 503 46.3
Ca_30349_v3 Cicer arietinum L. HOM05D006455 ORTHO05D008098 9.1e-117 424.9 518 47.1
arahy.Tifrunner.gnm1.ann1.E0JCGG Arachis hypogaea HOM05D006455 ORTHO05D008098 3.4e-116 422.9 495 46.9
PSO210G0904 Papaver somniferum HOM05D006455 ORTHO05D008098 3.4e-116 422.9 511 49.1
Phvul.003G279900 Phaseolus vulgaris HOM05D006455 ORTHO05D008098 1.3e-115 421.0 507 49.7
Manes.12G057900 Manihot esculenta HOM05D006455 ORTHO05D008098 1.7e-115 420.6 494 47.4
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 1.7e-115 420.6 517 44.9
Manes.12G058105 Manihot esculenta HOM05D006455 ORTHO05D008098 1.0e-112 411.4 494 47.0
Gohir.D11G150900 Gossypium hirsutum HOM05D006455 ORTHO05D008098 5.7e-111 405.6 387 53.7
ATR0743G062 Amborella trichopoda HOM05D006455 ORTHO05D008098 7.4e-111 405.2 518 43.6
Medtr8g071270 Medicago truncatula HOM05D006455 ORTHO05D008098 1.4e-109 401.0 504 46.8
Ca_22482_v3 Cicer arietinum L. HOM05D006455 ORTHO05D008098 2.4e-109 400.2 501 46.7
Os01g0897100 Oryza sativa ssp. japonica HOM05D006455 ORTHO05D008098 8.5e-107 391.7 495 46.7
Actinidia23129 Actinidia chinensis HOM05D006455 ORTHO05D008098 5.5e-106 389.0 506 46.6
DCAR_000439 Daucus carota HOM05D006455 ORTHO05D008098 9.4e-106 388.3 347 54.8
EL10Ac5g10573 Beta vulgaris HOM05D006455 ORTHO05D008098 1.6e-105 387.5 413 49.6
Ah.11g050710 Amaranthus hybridus HOM05D006455 ORTHO05D008098 1.8e-104 384.0 510 43.7
Zm00001eb144730 Zea mays HOM05D006455 ORTHO05D008098 7.0e-101 372.1 498 46.0
MBI07_g34151_MAGBIO Magnolia biondii HOM05D006455 ORTHO05D008098 1.2e-100 371.3 501 48.3
SEGI_16096 Sequoiadendron giganteum HOM05D006455 ORTHO05D008098 3.2e-98 363.2 521 41.3
HPP92_001271 Vanilla planifolia HOM05D006455 ORTHO05D008098 2.2e-86 323.9 336 49.4
Manes.12G058904 Manihot esculenta HOM05D006455 ORTHO05D008098 6.3e-86 322.4 271 57.6
Dinv07639 Davidia involucrata HOM05D006455 ORTHO05D008098 1.8e-77 294.3 394 41.9
PGSC0003DMG402020303 Solanum tuberosum HOM05D006455 ORTHO05D008098 1.8e-72 277.7 340 45.0
Manes.12G057503 Manihot esculenta HOM05D006455 ORTHO05D008098 4.9e-70 269.6 199 64.3
Manes.12G057505 Manihot esculenta HOM05D006455 ORTHO05D008098 4.9e-70 269.6 199 64.3
Oeu030353.1 Olea europaea HOM05D006455 ORTHO05D008098 3.9e-67 260.0 334 46.7
Mapoly0109s0061 Marchantia polymorpha HOM05D006455 ORTHO05D008098 1.7e-62 244.6 514 35.6
HPP92_001254 Vanilla planifolia HOM05D006455 ORTHO05D008098 6.4e-62 242.7 220 55.0
SMO200G0077 Selaginella moellendorffii HOM05D006455 ORTHO05D008098 8.3e-62 242.3 468 35.5
Pp3c10_13370 Physcomitrium patens HOM05D006455 ORTHO05D008098 6.0e-60 236.1 530 32.5
CDE05G1197 Ceratophyllum demersum HOM05D006455 ORTHO05D008098 1.9e-53 214.5 160 58.1
AagrBONN_evm.TU.Sc2ySwM_228.5553 Anthoceros agrestis HOM05D006455 ORTHO05D008098 1.5e-47 194.9 502 28.9
CBR_g48756 Chara braunii HOM05D006455 ORTHO05D000497 9.6e-42 175.6 493 33.1
Manes.12G057504 Manihot esculenta HOM05D006455 ORTHO05D008098 3.8e-30 137.1 195 43.6
Zm00001eb128090 Zea mays HOM05D006455 ORTHO05D008098 2.0e-23 114.8 172 41.3
EL10Ac5g10574 Beta vulgaris HOM05D006455 ORTHO05D008098 5.8e-23 113.2 116 52.6
Oeu030354.1 Olea europaea HOM05D006455 ORTHO05D008098 7.6e-23 112.8 116 52.6
Manes.12G060108 Manihot esculenta HOM05D006455 ORTHO05D008098 3.8e-22 110.5 174 43.1
Zm00001eb128100 Zea mays HOM05D006455 ORTHO05D008098 7.1e-21 106.3 143 40.6
Zm00001eb274660 Zea mays HOM05D006455 ORTHO05D008098 7.9e-20 102.8 143 39.9
PGSC0003DMG400020304 Solanum tuberosum HOM05D006455 ORTHO05D008098 8.7e-19 99.4 116 50.0
Cre03.g197250 Chlamydomonas reinhardtii HOM05D006455 ORTHO05D008098 2.8e-17 94.4 226 32.3
Phvul.003G297266 Phaseolus vulgaris HOM05D006455 ORTHO05D008098 2.5e-13 81.3 122 41.0
Oeu003682.1 Olea europaea HOM05D006455 ORTHO05D008098 1.5e-10 72.0 116 38.8


User provided reference genes

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