Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g30794 Brassica carinata HOM05D006407 ORTHO05D008079 3.1e-243 844.7 435 100.0
Thhalv10004357m.g Eutrema salsugineum HOM05D006407 ORTHO05D008079 1.2e-106 391.0 480 52.3
C09p04840 Brassica napus HOM05D006407 ORTHO05D008079 1.0e-105 387.9 478 52.3
BcaC04g23774 Brassica carinata HOM05D006407 ORTHO05D008079 3.9e-105 386.0 478 52.1
BolC9t53411H Brassica oleracea HOM05D006407 ORTHO05D008079 3.9e-105 386.0 478 52.1
A09p04530 Brassica napus HOM05D006407 ORTHO05D008079 2.0e-104 383.6 478 51.9
BraA09t36088Z Brassica rapa HOM05D006407 ORTHO05D008079 2.0e-104 383.6 478 51.9
BcaB04g19579 Brassica carinata HOM05D006407 ORTHO05D008079 3.7e-103 379.4 501 49.9
CARHR183610 Cardamine hirsuta HOM05D006407 ORTHO05D008079 2.9e-100 369.8 477 50.7
AT5G48470 Arabidopsis thaliana HOM05D006407 ORTHO05D008079 5.0e-100 369.0 479 49.7
AL8G21320 Arabidopsis lyrata HOM05D006407 ORTHO05D008079 1.9e-99 367.1 479 49.9
Carub.0008s0805 Capsella rubella HOM05D006407 ORTHO05D008079 3.2e-99 366.3 480 50.2
Aa31sc527G10 Aethionema arabicum HOM05D006407 ORTHO05D008079 1.4e-94 350.9 496 48.6
Sp2g18840 Schrenkiella parvula HOM05D006407 ORTHO05D008079 1.4e-89 334.3 479 48.4
THA.LOC104802645 Tarenaya hassleriana HOM05D006407 ORTHO05D008079 6.8e-89 332.0 506 45.3
Actinidia30017 Actinidia chinensis HOM05D006407 ORTHO05D008079 1.1e-75 288.1 467 42.8
Gorai.N003300 Gossypium raimondii HOM05D006407 ORTHO05D008079 2.1e-74 283.9 506 41.7
Cpa.g.sc8.72 Carica papaya HOM05D006407 ORTHO05D008079 1.4e-73 281.2 466 43.1
Gohir.A07G159200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 2.0e-72 277.3 506 41.3
Cfa010568 Carpinus fangiana HOM05D006407 ORTHO05D008079 2.6e-72 276.9 504 40.1
Haze_03500 Corylus avellana HOM05D006407 ORTHO05D008079 3.4e-72 276.6 494 41.1
Manes.12G054200 Manihot esculenta HOM05D006407 ORTHO05D008079 4.4e-72 276.2 486 41.6
Hma1.2p1_0161F.1_g071410 Hydrangea macrophylla HOM05D006407 ORTHO05D008079 4.9e-71 272.7 456 41.9
CiPaw.14G043600 Carya illinoinensis HOM05D006407 ORTHO05D008079 1.1e-70 271.6 467 41.8
Lj1C101T0 Lonicera japonica HOM05D006407 ORTHO05D008079 7.0e-70 268.9 248 60.5
Thecc.01G211000 Theobroma cacao HOM05D006407 ORTHO05D008079 7.0e-70 268.9 501 39.7
CSS0030734 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 1.6e-69 267.7 266 57.5
CSS0036527 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 1.6e-69 267.7 266 57.5
CANSAT01G1280 Cannabis sativa HOM05D006407 ORTHO05D008079 2.7e-69 266.9 514 38.5
QL09p046404 Quercus lobata HOM05D006407 ORTHO05D008079 2.7e-69 266.9 517 39.5
GSVIVG01006226001 Vitis vinifera HOM05D006407 ORTHO05D008079 4.6e-69 266.2 267 56.9
Ah.11g051020 Amaranthus hybridus HOM05D006407 ORTHO05D008079 7.8e-69 265.4 503 38.8
Potri.002G251400 Populus trichocarpa HOM05D006407 ORTHO05D008079 7.8e-69 265.4 268 57.1
Dinv28811 Davidia involucrata HOM05D006407 ORTHO05D008079 2.3e-68 263.8 510 39.0
Prupe.8G190300 Prunus persica HOM05D006407 ORTHO05D008079 6.6e-68 262.3 489 39.1
TAR636G1997 Trochodendron aralioides HOM05D006407 ORTHO05D008079 1.5e-67 261.2 500 39.0
Peaxi162Scf00335g00087 Petunia axillaris HOM05D006407 ORTHO05D008079 1.9e-67 260.8 479 39.0
Eucgr.H00725 Eucalyptus grandis HOM05D006407 ORTHO05D008079 7.3e-67 258.8 475 39.6
Sc17g0001660 Simmondsia chinensis HOM05D006407 ORTHO05D008079 7.3e-67 258.8 452 39.6
Sopen09g019480 Solanum pennellii HOM05D006407 ORTHO05D008079 2.8e-66 256.9 262 55.3
Ciclev10015489m.g Citrus clementina HOM05D006407 ORTHO05D008079 3.6e-66 256.5 295 53.6
Sed0008140 Sechium edule HOM05D006407 ORTHO05D008079 3.6e-66 256.5 507 38.7
PGSC0003DMG400013943 Solanum tuberosum HOM05D006407 ORTHO05D008079 3.6e-66 256.5 481 38.7
RcHm_v2.0_Chr6g0282821 Rosa chinensis HOM05D006407 ORTHO05D008079 8.0e-66 255.4 478 38.7
Solyc09g056160.4 Solanum lycopersicum HOM05D006407 ORTHO05D008079 1.0e-65 255.0 262 55.0
vmacro02816 Vaccinium macrocarpon HOM05D006407 ORTHO05D008079 1.0e-65 255.0 266 54.1
CsaV3_7G026830 Cucumis sativus L. HOM05D006407 ORTHO05D008079 1.4e-65 254.6 482 38.4
MSTRG.18495 Avicennia marina HOM05D006407 ORTHO05D008079 1.8e-65 254.2 267 54.3
Oeu057833.1 Olea europaea HOM05D006407 ORTHO05D008079 2.3e-65 253.8 266 54.5
TWI36G1400 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 2.3e-65 253.8 297 51.9
FAN15G1719 Fragaria x ananassa HOM05D006407 ORTHO05D008079 5.2e-65 252.7 502 38.2
ECA247G2281 Erigeron canadensis HOM05D006407 ORTHO05D008079 6.8e-65 252.3 281 52.7
TWI18G0256 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 6.8e-65 252.3 493 38.1
Aqoxy2G03962 Aquilegia oxysepala HOM05D006407 ORTHO05D008079 8.9e-65 251.9 298 52.3
PSO675G1275 Papaver somniferum HOM05D006407 ORTHO05D008079 1.5e-64 251.1 470 40.0
PSO017G7241 Papaver somniferum HOM05D006407 ORTHO05D008079 2.0e-64 250.8 470 39.8
FAN27G2095 Fragaria x ananassa HOM05D006407 ORTHO05D008079 2.6e-64 250.4 468 39.1
FAN27G3088 Fragaria x ananassa HOM05D006407 ORTHO05D008079 2.6e-64 250.4 468 39.1
FvH4_2g17800 Fragaria vesca HOM05D006407 ORTHO05D008079 4.4e-64 249.6 502 38.0
FAN24G2889 Fragaria x ananassa HOM05D006407 ORTHO05D008079 4.4e-64 249.6 502 38.0
ClCG09G008210 Citrullus lanatus HOM05D006407 ORTHO05D008079 7.5e-64 248.8 463 38.0
unitig_64.g29771 Utricularia gibba HOM05D006407 ORTHO05D008079 7.5e-64 248.8 388 44.6
Lj1g0005258 Lotus japonicus HOM05D006407 ORTHO05D008079 1.7e-63 247.7 267 54.7
HanXRQChr08g0231421 Helianthus annuus HOM05D006407 ORTHO05D008079 3.7e-63 246.5 281 52.7
Ca_12772_v3 Cicer arietinum L. HOM05D006407 ORTHO05D008079 4.9e-63 246.1 293 51.5
Lsat_1_v5_gn_9_16300 Lactuca sativa HOM05D006407 ORTHO05D008079 4.9e-63 246.1 273 53.8
PGR083G0415 Punica granatum HOM05D006407 ORTHO05D008079 4.9e-63 246.1 468 39.3
Hund02795 Selenicereus undatus HOM05D006407 ORTHO05D008079 8.3e-63 245.4 472 38.8
Gohir.D07G167200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 3.2e-62 243.4 506 38.7
Psat6g036520 Pisum sativum HOM05D006407 ORTHO05D008079 5.4e-62 242.7 264 53.8
AUR62008121 Chenopodium quinoa HOM05D006407 ORTHO05D008079 7.0e-62 242.3 509 36.5
Medtr1g007490 Medicago truncatula HOM05D006407 ORTHO05D008079 7.0e-62 242.3 292 51.4
Cc01_g16130 Coffea canephora HOM05D006407 ORTHO05D008079 9.2e-62 241.9 472 37.5
Rhsim13G0052700 Rhododendron simsii HOM05D006407 ORTHO05D008079 9.2e-62 241.9 451 38.8
HPP92_024258 Vanilla planifolia HOM05D006407 ORTHO05D008079 2.7e-61 240.4 260 50.8
arahy.Tifrunner.gnm1.ann1.FHDW0K Arachis hypogaea HOM05D006407 ORTHO05D008079 6.0e-61 239.2 258 54.3
Glyma.03G089700 Glycine max HOM05D006407 ORTHO05D008079 1.0e-60 238.4 267 53.6
arahy.Tifrunner.gnm1.ann1.Q8L9VW Arachis hypogaea HOM05D006407 ORTHO05D008079 1.3e-60 238.0 258 53.9
MD10G1151900 Malus domestica HOM05D006407 ORTHO05D008079 3.0e-60 236.9 454 37.4
Lalb_Chr07g0194511 Lupinus albus HOM05D006407 ORTHO05D008079 3.9e-60 236.5 288 50.3
COL.COLO4_26571 Corchorus olitorius HOM05D006407 ORTHO05D008079 1.1e-59 235.0 453 38.9
EL10Ac5g10625 Beta vulgaris HOM05D006407 ORTHO05D008079 1.5e-59 234.6 489 37.8
Migut.D00736 Erythranthe guttata HOM05D006407 ORTHO05D008079 2.5e-59 233.8 247 55.9
Glyma.16G083300 Glycine max HOM05D006407 ORTHO05D008079 1.2e-58 231.5 296 49.3
Zm00001eb169280 Zea mays HOM05D006407 ORTHO05D008079 2.1e-58 230.7 269 48.0
ATR0686G167 Amborella trichopoda HOM05D006407 ORTHO05D008079 2.3e-57 227.3 269 49.1
Sabra02G0191100 Salix brachista HOM05D006407 ORTHO05D008079 4.0e-57 226.5 254 52.8
Phvul.008G108300 Phaseolus vulgaris HOM05D006407 ORTHO05D008079 6.8e-57 225.7 293 47.4
Nitab4.5_0003859g0020 Nicotiana tabacum HOM05D001236 ORTHO05D001090 3.2e-54 216.9 439 36.7
SalBow6G2639 Salvia bowleyana HOM05D006407 ORTHO05D008079 8.6e-52 208.8 236 50.4
Nitab4.5_0000038g0130 Nicotiana tabacum HOM05D006407 ORTHO05D008079 1.5e-51 208.0 491 34.2
SGA_v2.0_scaffold29G12072 Striga asiatica HOM05D006407 ORTHO05D008079 8.1e-50 202.2 311 43.4
CDE09G0438 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 5.2e-49 199.5 240 50.0
Os11g0425300 Oryza sativa ssp. japonica HOM05D006407 ORTHO05D008079 3.7e-47 193.4 235 47.7
Atru.chr6.3545 Acer truncatum HOM05D006407 ORTHO05D008079 4.1e-46 189.9 337 39.5
VMungo1383G2551 Vigna mungo HOM05D006407 ORTHO05D008079 1.0e-44 185.3 276 45.3
unitig_62.g23866 Utricularia gibba HOM05D006407 ORTHO05D008079 3.1e-41 173.7 188 53.7
SEGI_39839 Sequoiadendron giganteum HOM05D006407 ORTHO05D008079 6.8e-41 172.6 258 41.5
BolC7t44437H Brassica oleracea HOM05D006407 ORTHO05D008079 2.2e-39 167.5 337 42.4
HPP92_024262 Vanilla planifolia HOM05D006407 ORTHO05D008079 1.1e-38 165.2 183 48.6
C07p39170 Brassica napus HOM05D006407 ORTHO05D008079 6.0e-37 159.5 326 40.5
Mapoly0125s0038 Marchantia polymorpha HOM05D006407 ORTHO05D008079 8.7e-36 155.6 273 35.2
Nn1g08257 Nelumbo nucifera HOM05D006407 ORTHO05D008079 1.6e-34 151.4 320 36.2
SMO367G1011 Selaginella moellendorffii HOM05D006407 ORTHO05D008079 2.6e-32 144.1 265 35.1
Pp3c19_21450 Physcomitrium patens HOM05D006407 ORTHO05D008079 9.3e-30 135.6 330 28.8
Nn1g08232 Nelumbo nucifera HOM05D006407 ORTHO05D008079 1.3e-28 131.7 158 50.6
Duzib138G1048 Durio zibethinus HOM05D006407 ORTHO05D008079 5.6e-27 126.3 221 40.3
A06p39160 Brassica napus HOM05D006407 ORTHO05D008079 4.8e-26 123.2 120 60.0
MBI11_g07407_MAGBIO Magnolia biondii HOM05D006407 ORTHO05D003073 8.1e-26 122.5 164 47.0
AagrBONN_evm.TU.Sc2ySwM_368.2294 Anthoceros agrestis HOM05D006407 ORTHO05D008079 7.6e-24 115.9 165 41.2
AUR62028699 Chenopodium quinoa HOM05D006407 ORTHO05D008079 1.0e-15 89.0 142 43.0
Migut.D00733 Erythranthe guttata HOM05D006407 ORTHO05D008079 2.9e-15 87.4 52 80.8
BraA06t26831Z Brassica rapa HOM05D006407 ORTHO05D008079 4.9e-15 86.7 128 46.1
Lsat_1_v5_gn_9_60420 Lactuca sativa HOM05D001780 ORTHO05D008079 3.2e-14 84.0 116 45.7
CDE02G0544 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 1.6e-13 81.6 52 71.2
DCAR_004768 Daucus carota HOM05D006407 ORTHO05D008079 2.7e-13 80.9 158 39.2
CBR_g12604 Chara braunii HOM05D001724 ORTHO05D007284 1.3e-10 72.0 259 28.2
MD05G1159200 Malus domestica HOM05D006407 ORTHO05D008079 2.2e-07 61.2 41 73.2


User provided reference genes

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