Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g30792 Brassica carinata HOM05D002211 ORTHO05D002206 1.7e-148 529.3 257 100.0
BcaC06g30790 Brassica carinata HOM05D002211 ORTHO05D002206 2.6e-72 276.2 162 85.8
C07p39190 Brassica napus HOM05D002211 ORTHO05D002206 2.9e-71 272.7 162 84.6
BolC7t44440H Brassica oleracea HOM05D002211 ORTHO05D002206 3.8e-71 272.3 149 89.9
BraA06t26828Z Brassica rapa HOM05D002211 ORTHO05D002206 7.8e-69 264.6 150 88.0
A06p39140 Brassica napus HOM05D002211 ORTHO05D002206 1.1e-67 260.8 163 82.2
BcaC06g30788 Brassica carinata HOM05D002211 ORTHO05D002206 2.4e-62 243.0 166 77.7
CARHR183520 Cardamine hirsuta HOM05D002211 ORTHO05D002206 9.9e-56 221.1 168 72.0
A02p37510 Brassica napus HOM05D002211 ORTHO05D002206 2.9e-55 219.5 153 74.5
Thhalv10005044m.g Eutrema salsugineum HOM05D002211 ORTHO05D002206 2.9e-55 219.5 165 70.3
AT5G48500 Arabidopsis thaliana HOM05D002211 ORTHO05D002206 9.3e-54 214.5 169 69.2
BcaC03g17656 Brassica carinata HOM05D002211 ORTHO05D002206 2.7e-53 213.0 166 69.9
AL8G21370 Arabidopsis lyrata HOM05D002211 ORTHO05D002206 3.5e-53 212.6 169 68.6
C02p56580 Brassica napus HOM05D002211 ORTHO05D002206 7.9e-53 211.5 153 73.2
BolC2t11717H Brassica oleracea HOM05D002211 ORTHO05D002206 7.9e-53 211.5 153 73.2
BraA02t08738Z Brassica rapa HOM05D002211 ORTHO05D002206 1.8e-52 210.3 155 73.5
Sp2g18870 Schrenkiella parvula HOM05D002211 ORTHO05D002206 1.8e-52 210.3 167 70.1
BcaB07g30027 Brassica carinata HOM05D002211 ORTHO05D002206 3.9e-52 209.1 154 73.4
Carub.0008s0808 Capsella rubella HOM05D002211 ORTHO05D002206 2.5e-43 179.9 176 61.4
A09p04550 Brassica napus HOM05D002211 ORTHO05D002206 1.5e-40 170.6 152 61.2
BraA09t36090Z Brassica rapa HOM05D002211 ORTHO05D002206 1.5e-40 170.6 152 61.2
BcaC04g23772 Brassica carinata HOM05D002211 ORTHO05D002206 2.6e-40 169.9 165 59.4
C09p04850 Brassica napus HOM05D004226 ORTHO05D004842 7.6e-40 168.3 152 61.8
Aa31sc1803G10 Aethionema arabicum HOM05D002211 ORTHO05D002206 7.9e-37 158.3 143 62.9
THA.LOC104818996 Tarenaya hassleriana HOM05D002211 ORTHO05D002206 1.5e-35 154.1 154 59.1
THA.LOC104822468 Tarenaya hassleriana HOM05D002211 ORTHO05D002206 1.2e-32 144.4 145 58.6
Gorai.N003500 Gossypium raimondii HOM05D002211 ORTHO05D002206 2.8e-26 123.2 138 54.3
Gohir.D07G167000 Gossypium hirsutum HOM05D002211 ORTHO05D002206 3.7e-26 122.9 137 55.5
Medtr8g011470 Medicago truncatula HOM05D002211 ORTHO05D002206 3.1e-25 119.8 141 52.5
Thecc.01G211400 Theobroma cacao HOM05D002211 ORTHO05D002206 3.1e-25 119.8 146 53.4
Psat4g206640 Pisum sativum HOM05D002211 ORTHO05D002206 5.3e-25 119.0 133 53.4
Lj3g0001912 Lotus japonicus HOM05D002211 ORTHO05D002206 9.1e-25 118.2 135 53.3
CiPaw.13G055000 Carya illinoinensis HOM05D002211 ORTHO05D002206 1.5e-24 117.5 129 52.7
Ciclev10017076m.g Citrus clementina HOM05D002211 ORTHO05D002206 2.6e-24 116.7 137 53.3
Gorai.007G159300 Gossypium raimondii HOM05D002211 ORTHO05D002206 4.5e-24 115.9 138 51.4
Glyma.03G089800 Glycine max HOM05D002211 ORTHO05D002206 5.9e-24 115.5 130 49.2
Gohir.A11G142300 Gossypium hirsutum HOM05D002211 ORTHO05D002206 5.9e-24 115.5 140 52.1
TWI36G0467 Tripterygium wilfordii HOM05D002211 ORTHO05D002206 5.9e-24 115.5 145 51.7
Duzib138G0235 Durio zibethinus HOM05D002211 ORTHO05D002206 1.7e-23 114.0 138 51.4
Glyma.13G008000 Glycine max HOM05D002211 ORTHO05D002206 1.7e-23 114.0 130 50.0
Gohir.A07G196800 Gossypium hirsutum HOM05D002211 ORTHO05D002206 1.7e-23 114.0 138 47.1
Gohir.D11G148600 Gossypium hirsutum HOM05D002211 ORTHO05D002206 2.2e-23 113.6 138 50.7
VMungo0331G1849 Vigna mungo HOM05D002211 ORTHO05D002206 2.2e-23 113.6 130 48.5
QL09p046170 Quercus lobata HOM05D002211 ORTHO05D002206 3.8e-23 112.8 129 51.2
CANSAT01G1044 Cannabis sativa HOM05D002211 ORTHO05D002206 5.0e-23 112.5 141 50.4
Gohir.A07G159400 Gossypium hirsutum HOM05D002211 ORTHO05D002206 5.0e-23 112.5 138 51.4
Gorai.001G228600 Gossypium raimondii HOM05D002211 ORTHO05D002206 5.0e-23 112.5 138 47.8
Phvul.010G031300 Phaseolus vulgaris HOM05D002211 ORTHO05D002206 5.0e-23 112.5 130 48.5
Gohir.D07G203200 Gossypium hirsutum HOM05D002211 ORTHO05D002206 1.1e-22 111.3 138 47.8
Potri.002G250800 Populus trichocarpa HOM05D002211 ORTHO05D002206 1.1e-22 111.3 139 48.9
Manes.12G053700 Manihot esculenta HOM05D002211 ORTHO05D002206 1.4e-22 110.9 145 48.3
Actinidia23360 Actinidia chinensis HOM05D002211 ORTHO05D002206 1.9e-22 110.5 142 50.0
COL.COLO4_38590 Corchorus olitorius HOM05D002211 ORTHO05D002206 1.9e-22 110.5 146 48.6
Haze_23452 Corylus avellana HOM05D002211 ORTHO05D002206 2.5e-22 110.2 137 51.1
MD05G1159900 Malus domestica HOM05D002211 ORTHO05D002206 4.2e-22 109.4 136 50.0
RcHm_v2.0_Chr6g0282871 Rosa chinensis HOM05D002211 ORTHO05D002206 4.2e-22 109.4 141 50.4
Atru.chr6.3550 Acer truncatum HOM05D002211 ORTHO05D002206 5.5e-22 109.0 133 48.1
FvH4_2g17840 Fragaria vesca HOM05D002211 ORTHO05D002206 9.4e-22 108.2 141 49.6
FAN27G0804 Fragaria x ananassa HOM05D002211 ORTHO05D002206 9.4e-22 108.2 134 48.5
FAN24G0249 Fragaria x ananassa HOM05D002211 ORTHO05D002206 1.2e-21 107.8 141 49.6
Rhsim13G0052500 Rhododendron simsii HOM05D002211 ORTHO05D002206 1.2e-21 107.8 131 48.9
Prupe.8G190600 Prunus persica HOM05D002211 ORTHO05D002206 1.6e-21 107.5 133 51.1
MSTRG.21304 Avicennia marina HOM05D002211 ORTHO05D002206 2.1e-21 107.1 132 48.5
Manes.13G054300 Manihot esculenta HOM05D002211 ORTHO05D002206 2.1e-21 107.1 143 46.2
VMungo1383G1511 Vigna mungo HOM05D002211 ORTHO05D002206 2.1e-21 107.1 141 48.9
Cpa.g.sc8.75 Carica papaya HOM05D002211 ORTHO05D002206 3.6e-21 106.3 146 45.9
Rhsim01G0248800 Rhododendron simsii HOM05D002211 ORTHO05D002206 7.9e-21 105.1 144 47.9
FAN15G0122 Fragaria x ananassa HOM05D002211 ORTHO05D002206 1.0e-20 104.8 133 48.9
Lalb_Chr01g0022001 Lupinus albus HOM05D002211 ORTHO05D002206 1.0e-20 104.8 141 46.8
CiPaw.14G043400 Carya illinoinensis HOM05D002211 ORTHO05D002206 1.4e-20 104.4 137 45.3
Glyma.18G152300 Glycine max HOM05D002211 ORTHO05D002206 1.4e-20 104.4 142 47.9
arahy.Tifrunner.gnm1.ann1.0TX68Y Arachis hypogaea HOM05D002211 ORTHO05D002206 1.8e-20 104.0 132 48.5
MD10G1152300 Malus domestica HOM05D002211 ORTHO05D002206 1.8e-20 104.0 140 47.9
Lsat_1_v5_gn_9_16221 Lactuca sativa HOM05D002211 ORTHO05D002206 2.3e-20 103.6 159 43.4
CSS0000478 Camellia sinensis var. sinensis HOM05D002211 ORTHO05D002206 3.0e-20 103.2 130 50.0
Lalb_Chr03g0041111 Lupinus albus HOM05D002211 ORTHO05D002206 3.0e-20 103.2 139 46.8
Lsat_1_v5_gn_8_97941 Lactuca sativa HOM05D002211 ORTHO05D002206 3.9e-20 102.8 147 42.9
Nitab4.5_0000038g0090 Nicotiana tabacum HOM05D002211 ORTHO05D002206 3.9e-20 102.8 132 50.8
vmacro14694 Vaccinium macrocarpon HOM05D002211 ORTHO05D002206 3.9e-20 102.8 145 44.1
DCAR_012692 Daucus carota HOM05D002211 ORTHO05D002206 8.8e-20 101.7 135 45.2
TWI18G0790 Tripterygium wilfordii HOM05D002211 ORTHO05D002206 8.8e-20 101.7 138 47.1
Actinidia30019 Actinidia chinensis HOM05D002211 ORTHO05D002206 1.5e-19 100.9 134 44.8
MSTRG.17972 Avicennia marina HOM05D002211 ORTHO05D002206 1.5e-19 100.9 126 48.4
Peaxi162Scf00335g00107 Petunia axillaris HOM05D002211 ORTHO05D002206 1.5e-19 100.9 140 45.7
arahy.Tifrunner.gnm1.ann1.PCV855 Arachis hypogaea HOM05D002211 ORTHO05D002206 2.0e-19 100.5 132 49.2
DCAR_018626 Daucus carota HOM05D002211 ORTHO05D002206 2.6e-19 100.1 143 45.5
Glyma.08G344400 Glycine max HOM05D002211 ORTHO05D002206 7.4e-19 98.6 143 45.5
Cc01_g16160 Coffea canephora HOM05D002211 ORTHO05D002206 9.7e-19 98.2 136 45.6
Dinv28814 Davidia involucrata HOM05D002211 ORTHO05D002206 1.3e-18 97.8 143 45.5
HanXRQChr16g0507881 Helianthus annuus HOM05D002211 ORTHO05D002206 1.3e-18 97.8 133 47.4
Oeu003632.1 Olea europaea HOM05D002211 ORTHO05D002206 1.7e-18 97.4 143 44.1
Eucgr.H00728 Eucalyptus grandis HOM05D002211 ORTHO05D002206 2.2e-18 97.1 134 46.3
vmacro02814 Vaccinium macrocarpon HOM05D002211 ORTHO05D002206 4.8e-18 95.9 149 44.3
Sabra02G0190700 Salix brachista HOM05D002211 ORTHO05D002206 6.3e-18 95.5 149 42.3
ECA247G4066 Erigeron canadensis HOM05D002211 ORTHO05D002206 8.2e-18 95.1 157 42.0
TPR.G28988 Trifolium pratense HOM05D002211 ORTHO05D002206 2.4e-17 93.6 114 50.0
CSS0050270 Camellia sinensis var. sinensis HOM05D002211 ORTHO05D002206 3.1e-17 93.2 131 46.6
Nitab4.5_0009151g0010 Nicotiana tabacum HOM05D002211 ORTHO05D002206 5.3e-17 92.4 131 45.8
Migut.N00663 Erythranthe guttata HOM05D002211 ORTHO05D002206 6.9e-17 92.0 139 44.6
Lsat_1_v5_gn_5_178360 Lactuca sativa HOM05D002211 ORTHO05D002206 6.9e-17 92.0 134 44.8
Phvul.008G137200 Phaseolus vulgaris HOM05D002211 ORTHO05D002206 6.9e-17 92.0 141 42.6
Peaxi162Scf00335g00116 Petunia axillaris HOM05D002211 ORTHO05D002206 1.5e-16 90.9 127 45.7
Psat3g151120 Pisum sativum HOM05D002211 ORTHO05D002206 1.5e-16 90.9 146 43.8
Sed0022694 Sechium edule HOM05D002211 ORTHO05D002206 1.5e-16 90.9 149 39.6
Ah.02g111170 Amaranthus hybridus HOM05D002211 ORTHO05D002206 2.0e-16 90.5 140 40.7
ClCG09G008150 Citrullus lanatus HOM05D002211 ORTHO05D002206 2.0e-16 90.5 138 42.0
Dinv10434 Davidia involucrata HOM05D002211 ORTHO05D002206 2.0e-16 90.5 134 45.5
Nitab4.5_0002463g0070 Nicotiana tabacum HOM05D002211 ORTHO05D002206 2.6e-16 90.1 132 43.9
Nitab4.5_0005972g0020 Nicotiana tabacum HOM05D002211 ORTHO05D002206 2.6e-16 90.1 129 48.8
CsaV3_7G026890 Cucumis sativus L. HOM05D002211 ORTHO05D002206 3.4e-16 89.7 138 41.3
Nitab4.5_0011983g0010 Nicotiana tabacum HOM05D002211 ORTHO05D002206 3.4e-16 89.7 132 43.2
PGSC0003DMG400020177 Solanum tuberosum HOM05D002211 ORTHO05D002206 3.4e-16 89.7 151 43.0
SGA_v2.0_scaffold77G25293 Striga asiatica HOM05D002211 ORTHO05D002206 4.5e-16 89.4 130 40.8
Nitab4.5_0000038g0110 Nicotiana tabacum HOM05D002211 ORTHO05D002206 5.9e-16 89.0 142 43.0
HanXRQChr01g0007241 Helianthus annuus HOM05D002211 ORTHO05D002206 7.7e-16 88.6 129 41.9
Solyc06g083080.3 Solanum lycopersicum HOM05D002211 ORTHO05D002206 7.7e-16 88.6 135 47.4
Sopen06g034470 Solanum pennellii HOM05D002211 ORTHO05D002206 7.7e-16 88.6 135 45.9
Nitab4.5_0005972g0010 Nicotiana tabacum HOM05D002211 ORTHO05D002206 1.0e-15 88.2 137 41.6
Sopen09g020090 Solanum pennellii HOM05D002211 ORTHO05D002206 1.0e-15 88.2 137 42.3
AUR62008124 Chenopodium quinoa HOM05D002211 ORTHO05D002206 1.3e-15 87.8 150 41.3
PGSC0003DMG400006602 Solanum tuberosum HOM05D002211 ORTHO05D002206 1.3e-15 87.8 137 43.8
Lalb_Chr07g0194521 Lupinus albus HOM05D002211 ORTHO05D002206 1.7e-15 87.4 140 42.9
EL10Ac5g10628 Beta vulgaris HOM05D002211 ORTHO05D002206 2.2e-15 87.0 142 40.1
Eucgr.K02089 Eucalyptus grandis HOM05D002211 ORTHO05D002206 3.8e-15 86.3 128 45.3
PGR083G1506 Punica granatum HOM05D002211 ORTHO05D002206 5.0e-15 85.9 143 43.4
SGA_v2.0_scaffold566G52949 Striga asiatica HOM05D002211 ORTHO05D002206 6.5e-15 85.5 128 43.8
DCAR_004766 Daucus carota HOM05D006769 ORTHO05D008522 8.5e-15 85.1 153 38.6
HanXRQChr08g0231451 Helianthus annuus HOM05D002211 ORTHO05D002206 8.5e-15 85.1 150 41.3
SalBow6G1551 Salvia bowleyana HOM05D002211 ORTHO05D002206 1.9e-14 84.0 85 52.9
ECA248G1643 Erigeron canadensis HOM05D002211 ORTHO05D002206 2.5e-14 83.6 130 43.1
Migut.D00729 Erythranthe guttata HOM05D002211 ORTHO05D002206 2.5e-14 83.6 137 41.6
Medtr7g052620 Medicago truncatula HOM05D002211 ORTHO05D002206 4.2e-14 82.8 144 38.2
Lj1g0027803 Lotus japonicus HOM05D002211 ORTHO05D002206 9.4e-14 81.6 130 42.3
GSVIVG01006232001 Vitis vinifera HOM05D002211 ORTHO05D002206 1.2e-13 81.3 105 46.7
Sed0012250 Sechium edule HOM05D002211 ORTHO05D002206 2.1e-13 80.5 130 40.8
Ah.11g051060 Amaranthus hybridus HOM05D002435 ORTHO05D002550 3.6e-13 79.7 137 40.1
Peaxi162Scf01242g00126 Petunia axillaris HOM05D002211 ORTHO05D002206 3.6e-13 79.7 137 43.8
unitig_0.g1220 Utricularia gibba HOM05D002211 ORTHO05D002206 7.9e-13 78.6 129 42.6
Peaxi162Scf00335g00096 Petunia axillaris HOM05D002211 ORTHO05D002206 1.0e-12 78.2 115 43.5
Hund09466 Selenicereus undatus HOM05D002211 ORTHO05D002206 1.0e-12 78.2 134 41.0
unitig_0.g413 Utricularia gibba HOM05D002211 ORTHO05D002206 2.3e-12 77.0 76 52.6
Nn5g27522 Nelumbo nucifera HOM05D002211 ORTHO05D002206 6.7e-12 75.5 157 38.2
MSTRG.18492 Avicennia marina HOM05D002211 ORTHO05D002206 1.5e-11 74.3 134 41.8
unitig_60.g25577 Utricularia gibba HOM05D002211 ORTHO05D002206 2.0e-11 73.9 70 55.7
SHI10255 Sapria himalayana HOM05D002211 ORTHO05D002206 5.7e-11 72.4 141 38.3
TPR.G26810 Trifolium pratense HOM05D002211 ORTHO05D002206 5.7e-11 72.4 86 46.5
Sc17g0001700 Simmondsia chinensis HOM05D002211 ORTHO05D002206 1.3e-10 71.2 174 37.4
Nn1g08275 Nelumbo nucifera HOM05D002211 ORTHO05D002206 2.8e-10 70.1 140 37.9
COL.COLO4_15265 Corchorus olitorius HOM05D002211 ORTHO05D002206 6.3e-10 68.9 76 48.7
TAR362G0774 Trochodendron aralioides HOM05D002211 ORTHO05D002206 1.1e-09 68.2 151 36.4
Glyma.03G253400 Glycine max HOM05D002211 ORTHO05D002206 1.8e-09 67.4 158 33.5
SHI10300 Sapria himalayana HOM05D002211 ORTHO05D002206 1.8e-09 67.4 154 35.7
AUR62028703 Chenopodium quinoa HOM05D002211 ORTHO05D002206 2.4e-09 67.0 75 52.0
CiPaw.07G075600 Carya illinoinensis HOM05D002211 ORTHO05D002206 1.2e-08 64.7 149 34.9
Nitab4.5_0002463g0080 Nicotiana tabacum HOM05D002211 ORTHO05D002206 2.6e-08 63.5 137 34.3
Aqoxy5G00111 Aquilegia oxysepala HOM05D002211 ORTHO05D002206 3.5e-08 63.2 146 34.9
Ciclev10022368m.g Citrus clementina HOM05D002211 ORTHO05D002206 3.5e-08 63.2 178 34.3
TAR365G0725 Trochodendron aralioides HOM05D002211 ORTHO05D002206 3.5e-08 63.2 148 37.2
Psat0s3038g0080 Pisum sativum HOM05D002211 ORTHO05D002206 4.5e-08 62.8 157 34.4
Glyma.19G250900 Glycine max HOM05D002211 ORTHO05D002206 5.9e-08 62.4 172 30.8
Actinidia23790 Actinidia chinensis HOM05D002211 ORTHO05D002206 1.0e-07 61.6 141 36.2
Aqoxy5G00107 Aquilegia oxysepala HOM05D002211 ORTHO05D002206 1.0e-07 61.6 147 33.3
Manes.08G147100 Manihot esculenta HOM05D002211 ORTHO05D002206 1.3e-07 61.2 165 34.5
PSO170G3935 Papaver somniferum HOM05D002211 ORTHO05D002206 2.2e-07 60.5 178 33.1
Psat3g005480 Pisum sativum HOM05D002211 ORTHO05D002206 3.8e-07 59.7 132 31.8
Cpa.g.sc51.66 Carica papaya HOM05D002211 ORTHO05D002206 5.0e-07 59.3 152 32.9
Phvul.006G108100 Phaseolus vulgaris HOM05D002211 ORTHO05D002206 8.5e-07 58.5 169 33.7
TAR633G0017 Trochodendron aralioides HOM05D002211 ORTHO05D002206 1.1e-06 58.2 148 33.1
Duzib128G1915 Durio zibethinus HOM05D002211 ORTHO05D002206 1.5e-06 57.8 166 28.3
TAR636G2930 Trochodendron aralioides HOM05D002211 ORTHO05D002206 1.5e-06 57.8 127 33.1
Duzib177G1183 Durio zibethinus HOM05D002211 ORTHO05D002206 1.9e-06 57.4 166 30.1
Medtr7g116610 Medicago truncatula HOM05D002211 ORTHO05D002206 1.9e-06 57.4 161 32.9
Ca_09451_v3 Cicer arietinum L. HOM05D002211 ORTHO05D002206 2.5e-06 57.0 167 29.3
TPR.G4687 Trifolium pratense HOM05D002211 ORTHO05D002206 2.5e-06 57.0 162 34.0
Prupe.6G355600 Prunus persica HOM05D002211 ORTHO05D002206 7.2e-06 55.5 156 28.8
Psat0s3509g0040 Pisum sativum HOM05D002211 ORTHO05D002206 9.4e-06 55.1 162 32.1
VMungo0540G2450 Vigna mungo HOM05D002211 ORTHO05D002206 9.4e-06 55.1 168 31.5


User provided reference genes

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