Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g30785 Brassica carinata HOM05D007255 ORTHO05D009052 4.3e-127 458.0 227 100.0
A06p39120 Brassica napus HOM05D007255 ORTHO05D009052 4.4e-116 421.4 224 93.8
C07p39220 Brassica napus HOM05D007255 ORTHO05D009052 4.4e-116 421.4 224 93.3
BolC7t44442H Brassica oleracea HOM05D007255 ORTHO05D009052 1.7e-115 419.5 224 92.9
BraA06t26826Z Brassica rapa HOM05D007255 ORTHO05D009052 3.7e-115 418.3 224 93.3
Sp2g18890 Schrenkiella parvula HOM05D007255 ORTHO05D009052 5.1e-112 407.9 224 90.2
Thhalv10004862m.g Eutrema salsugineum HOM05D007255 ORTHO05D009052 4.6e-105 384.8 224 87.1
Aa31LG5G18020 Aethionema arabicum HOM05D007255 ORTHO05D009052 8.7e-96 354.0 227 81.5
AL3G18750 Arabidopsis lyrata HOM05D007255 ORTHO05D009052 1.5e-95 353.2 225 82.2
AT3G07440 Arabidopsis thaliana HOM05D007255 ORTHO05D009052 1.9e-95 352.8 225 81.8
CARHR082090 Cardamine hirsuta HOM05D007255 ORTHO05D009052 1.6e-94 349.7 226 81.9
Carub.0003s0699 Capsella rubella HOM05D007255 ORTHO05D009052 5.3e-93 344.7 225 80.4
AT5G48530 Arabidopsis thaliana HOM05D007255 ORTHO05D009052 9.0e-93 344.0 197 87.3
THA.LOC104818995 Tarenaya hassleriana HOM05D007255 ORTHO05D009052 2.5e-87 325.9 227 75.3
Cpa.g.sc8.78 Carica papaya HOM05D007255 ORTHO05D009052 3.0e-80 302.4 226 69.0
MD10G1152600 Malus domestica HOM05D007255 ORTHO05D009052 2.8e-78 295.8 226 69.5
RcHm_v2.0_Chr6g0282891 Rosa chinensis HOM05D007255 ORTHO05D009052 2.8e-78 295.8 224 68.3
TWI18G1029 Tripterygium wilfordii HOM05D007255 ORTHO05D009052 4.8e-78 295.0 218 71.6
FAN15G3515 Fragaria x ananassa HOM05D007255 ORTHO05D009052 8.1e-78 294.3 224 67.9
FAN27G1291 Fragaria x ananassa HOM05D007255 ORTHO05D009052 8.1e-78 294.3 224 67.9
Thecc.01G211700 Theobroma cacao HOM05D007255 ORTHO05D009052 8.1e-78 294.3 223 68.2
TPR.G15196 Trifolium pratense HOM05D007255 ORTHO05D009052 1.4e-77 293.5 221 70.1
Ca_23187_v3 Cicer arietinum L. HOM05D007255 ORTHO05D009052 1.8e-77 293.1 223 70.4
Ca_30803_v3 Cicer arietinum L. HOM05D007255 ORTHO05D009052 1.8e-77 293.1 223 70.4
PGR044G0433 Punica granatum HOM05D007255 ORTHO05D009052 2.4e-77 292.7 221 72.4
Sabra02G0190600 Salix brachista HOM05D007255 ORTHO05D009052 2.4e-77 292.7 223 68.2
Atru.chr6.3551 Acer truncatum HOM05D007255 ORTHO05D009052 3.1e-77 292.4 223 67.3
FvH4_2g17870 Fragaria vesca HOM05D007255 ORTHO05D009052 3.1e-77 292.4 224 67.9
Duzib211G0668 Durio zibethinus HOM05D007255 ORTHO05D009052 6.9e-77 291.2 210 71.9
FAN24G0557 Fragaria x ananassa HOM05D007255 ORTHO05D009052 1.2e-76 290.4 224 67.4
Potri.002G250500 Populus trichocarpa HOM05D007255 ORTHO05D009052 1.5e-76 290.0 223 68.2
COL.COLO4_28926 Corchorus olitorius HOM05D007255 ORTHO05D009052 2.6e-76 289.3 212 70.8
Prupe.8G191100 Prunus persica HOM05D007255 ORTHO05D009052 2.6e-76 289.3 228 67.5
Eucgr.K02090 Eucalyptus grandis HOM05D007255 ORTHO05D009052 2.2e-75 286.2 225 68.0
Manes.13G054000 Manihot esculenta HOM05D007255 ORTHO05D009052 2.9e-75 285.8 210 68.6
Lj3g0001968 Lotus japonicus HOM05D007255 ORTHO05D009052 4.9e-75 285.0 230 66.1
arahy.Tifrunner.gnm1.ann1.TV22BE Arachis hypogaea HOM05D007255 ORTHO05D009052 1.9e-74 283.1 222 67.1
CiPaw.13G054800 Carya illinoinensis HOM05D007255 ORTHO05D009052 2.5e-74 282.7 224 67.4
Ciclev10016497m.g Citrus clementina HOM05D007255 ORTHO05D009052 3.2e-74 282.3 221 68.3
Hma1.2p1_0161F.1_g071360 Hydrangea macrophylla HOM05D007255 ORTHO05D009052 1.6e-73 280.0 227 64.3
QL09p046138 Quercus lobata HOM05D007255 ORTHO05D009052 1.6e-73 280.0 224 64.7
Gorai.007G159200 Gossypium raimondii HOM05D007255 ORTHO05D009052 3.5e-73 278.9 225 65.8
Gohir.A11G142200 Gossypium hirsutum HOM05D007255 ORTHO05D009052 4.6e-73 278.5 225 66.2
Medtr8g011480 Medicago truncatula HOM05D007255 ORTHO05D009052 4.6e-73 278.5 216 68.5
Nitab4.5_0000038g0080 Nicotiana tabacum HOM05D007255 ORTHO05D009052 1.3e-72 276.9 216 67.6
Dinv10428 Davidia involucrata HOM05D007255 ORTHO05D009052 1.8e-72 276.6 234 62.4
Gohir.D11G148500 Gossypium hirsutum HOM05D007255 ORTHO05D009052 3.0e-72 275.8 225 65.3
CANSAT01G0773 Cannabis sativa HOM05D007255 ORTHO05D009052 3.9e-72 275.4 224 63.8
Nitab4.5_0005972g0030 Nicotiana tabacum HOM05D007255 ORTHO05D009052 6.7e-72 274.6 216 66.7
SalBow6G0858 Salvia bowleyana HOM05D007255 ORTHO05D009052 1.1e-71 273.9 232 63.4
Solyc09g058990.3 Solanum lycopersicum HOM05D007255 ORTHO05D009052 1.1e-71 273.9 218 67.0
arahy.Tifrunner.gnm1.ann1.UDT0KZ Arachis hypogaea HOM05D007255 ORTHO05D009052 2.5e-71 272.7 220 65.9
Sopen09g020080 Solanum pennellii HOM05D007255 ORTHO05D009052 5.7e-71 271.6 218 66.5
ClCG09G008130 Citrullus lanatus HOM05D007352 ORTHO05D009052 1.6e-70 270.0 258 57.8
Glyma.03G089600 Glycine max HOM05D007255 ORTHO05D009052 2.1e-70 269.6 223 65.9
MELO3C012737.2 Cucumis melo HOM05D007255 ORTHO05D009052 2.8e-70 269.2 223 64.1
MSTRG.18490 Avicennia marina HOM05D007255 ORTHO05D009052 6.2e-70 268.1 200 71.0
SGA_v2.0_scaffold29G12102 Striga asiatica HOM05D007255 ORTHO05D009052 1.4e-69 266.9 196 68.4
CsaV3_7G026920 Cucumis sativus L. HOM05D007255 ORTHO05D009052 3.1e-69 265.8 210 67.1
Oeu064665.2 Olea europaea HOM05D007255 ORTHO05D009052 5.3e-69 265.0 243 60.5
Sed0001908 Sechium edule HOM05D007255 ORTHO05D009052 6.9e-69 264.6 222 62.6
TAR365G1235 Trochodendron aralioides HOM05D007255 ORTHO05D009052 6.9e-69 264.6 226 64.2
Rhsim01G0248900 Rhododendron simsii HOM05D007255 ORTHO05D009052 9.0e-69 264.2 220 65.0
Lalb_Chr12g0210041 Lupinus albus HOM05D007255 ORTHO05D009052 2.0e-68 263.1 231 61.0
Hund02793 Selenicereus undatus HOM05D007255 ORTHO05D009052 2.0e-68 263.1 229 63.3
Aqoxy5G00040 Aquilegia oxysepala HOM05D007255 ORTHO05D009052 4.5e-68 261.9 213 64.8
Sc05g0001760 Simmondsia chinensis HOM05D007255 ORTHO05D009052 6.5e-67 258.1 228 61.4
Migut.D00726 Erythranthe guttata HOM05D007255 ORTHO05D009052 8.4e-67 257.7 232 60.3
Ah.11g051090 Amaranthus hybridus HOM05D007255 ORTHO05D009052 1.9e-66 256.5 198 66.7
Phvul.010G031200 Phaseolus vulgaris HOM05D007255 ORTHO05D009052 2.5e-66 256.1 224 64.3
vmacro14695 Vaccinium macrocarpon HOM05D007255 ORTHO05D009052 7.1e-66 254.6 221 62.0
Actinidia34549 Actinidia chinensis HOM05D007255 ORTHO05D009052 9.3e-66 254.2 219 63.0
Cc01_g16200 Coffea canephora HOM05D007255 ORTHO05D009052 1.2e-65 253.8 241 61.8
ECA248G0740 Erigeron canadensis HOM05D007255 ORTHO05D009052 7.9e-65 251.1 225 60.9
Os02g0478500 Oryza sativa ssp. japonica HOM05D007255 ORTHO05D009052 3.3e-63 245.7 163 75.5
Nn1g08274 Nelumbo nucifera HOM05D007255 ORTHO05D009052 4.3e-63 245.4 281 50.2
AUR62028710 Chenopodium quinoa HOM05D007255 ORTHO05D009052 5.7e-63 245.0 242 57.9
EL10Ac5g10635 Beta vulgaris HOM05D007255 ORTHO05D009052 9.7e-63 244.2 219 59.8
Haze_03304 Corylus avellana HOM05D007255 ORTHO05D009052 1.6e-62 243.4 169 72.8
Zm00001eb241080 Zea mays HOM05D007255 ORTHO05D009052 4.8e-62 241.9 163 73.6
unitig_62.g23864 Utricularia gibba HOM05D007255 ORTHO05D009052 3.1e-61 239.2 206 63.1
PSO170G5614 Papaver somniferum HOM05D007255 ORTHO05D009052 4.1e-61 238.8 197 61.9
PSO357G0536 Papaver somniferum HOM05D007255 ORTHO05D009052 6.9e-61 238.0 203 60.6
Lsat_1_v5_gn_5_178401 Lactuca sativa HOM05D007255 ORTHO05D009052 9.0e-61 237.7 184 65.2
GSVIVG01006076001 Vitis vinifera HOM05D007255 ORTHO05D009052 4.5e-60 235.3 159 71.7
unitig_64.g29772 Utricularia gibba HOM05D007255 ORTHO05D009052 7.7e-60 234.6 218 59.6
ATR0491G001 Amborella trichopoda HOM05D007255 ORTHO05D009052 1.2e-57 227.3 160 71.2
HanXRQChr01g0025051 Helianthus annuus HOM05D007255 ORTHO05D009052 2.7e-57 226.1 194 63.4
Nn1g03664 Nelumbo nucifera HOM05D007255 ORTHO05D009052 3.6e-57 225.7 209 58.4
CSS0043687 Camellia sinensis var. sinensis HOM05D007255 ORTHO05D009052 1.4e-56 223.8 159 71.1
Lj1A100G17 Lonicera japonica HOM05D007255 ORTHO05D009052 2.4e-53 213.0 181 62.4
DCAR_018628 Daucus carota HOM05D007255 ORTHO05D009052 3.1e-53 212.6 170 65.3
Aqoxy2G00044 Aquilegia oxysepala HOM05D007255 ORTHO05D009052 2.6e-52 209.5 157 68.8
Peaxi162Scf00335g01514 Petunia axillaris HOM05D007255 ORTHO05D009052 7.4e-47 191.4 217 53.9
Actinidia23788 Actinidia chinensis HOM05D007255 ORTHO05D009052 2.2e-38 163.3 192 51.0
Glyma.16G083400 Glycine max HOM05D007255 ORTHO05D009052 1.6e-36 157.1 108 73.1
HPP92_024260 Vanilla planifolia HOM05D007255 ORTHO05D009052 3.8e-35 152.5 130 61.5
AUR62008128 Chenopodium quinoa HOM05D007255 ORTHO05D009052 2.8e-30 136.3 117 65.8
VMungo0331G1225 Vigna mungo HOM05D007255 ORTHO05D009052 3.8e-27 125.9 117 63.2
HPP92_024228 Vanilla planifolia HOM05D007255 ORTHO05D009052 7.2e-26 121.7 93 64.5
VMungo0331G0526 Vigna mungo HOM05D007255 ORTHO05D009052 8.8e-24 114.8 103 65.0
Prupe.8G191300 Prunus persica HOM05D007255 ORTHO05D009052 2.7e-20 103.2 91 58.2
CDE04G1852 Ceratophyllum demersum HOM05D007255 ORTHO05D009052 1.3e-19 100.9 81 63.0
SEGI_09952 Sequoiadendron giganteum HOM05D007255 ORTHO05D009052 6.6e-19 98.6 74 68.9
VMungo0251G0654 Vigna mungo HOM05D007255 ORTHO05D009052 6.1e-17 92.0 60 75.0
Psat0s4060g0280 Pisum sativum HOM05D007255 ORTHO05D009052 3.6e-09 66.2 68 57.4
GSVIVG01006250001 Vitis vinifera HOM05D007255 ORTHO05D009052 3.7e-06 56.2 61 57.4


User provided reference genes

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