Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g30714 Brassica carinata HOM05D005069 ORTHO05D006024 2.9e-54 214.9 106 100.0
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 4.7e-36 154.5 97 75.3
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 3.0e-35 151.8 98 77.6
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 6.8e-35 150.6 98 76.5
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 6.8e-35 150.6 98 76.5
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 6.8e-35 150.6 98 76.5
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 8.9e-35 150.2 96 76.0
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 1.5e-34 149.4 98 76.5
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 3.4e-34 148.3 98 75.5
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 7.5e-34 147.1 97 74.2
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 1.4e-32 142.9 97 70.1
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 4.1e-32 141.4 97 70.1
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 6.6e-30 134.0 97 69.1
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 1.3e-25 119.8 94 60.6
Thecc.04G288100 Theobroma cacao HOM05D005069 ORTHO05D006024 1.5e-21 106.3 104 51.0
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 2.5e-21 105.5 92 50.0
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 3.3e-21 105.1 104 49.0
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 9.5e-21 103.6 104 49.0
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 2.8e-20 102.1 98 48.0
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 1.1e-19 100.1 99 47.5
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 8.9e-19 97.1 92 50.0
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 8.9e-19 97.1 92 50.0
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 8.9e-19 97.1 92 50.0
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 3.4e-18 95.1 92 48.9
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 9.8e-18 93.6 92 47.8
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 1.3e-17 93.2 92 48.9
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 2.2e-17 92.4 95 45.3
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 4.9e-17 91.3 92 48.9
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 1.1e-16 90.1 97 43.3
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 1.1e-16 90.1 95 45.3
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 1.4e-16 89.7 92 45.7
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 1.4e-16 89.7 92 47.8
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 1.4e-16 89.7 92 47.8
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 2.4e-16 89.0 92 46.7
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 5.4e-16 87.8 95 45.3
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 7.1e-16 87.4 97 41.2
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 9.2e-16 87.0 97 42.3
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 9.2e-16 87.0 95 45.3
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 9.2e-16 87.0 97 43.3
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 9.2e-16 87.0 95 44.2
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 1.2e-15 86.7 86 47.7
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 1.6e-15 86.3 92 42.4
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 2.1e-15 85.9 89 44.9
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 2.1e-15 85.9 89 44.9
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 2.7e-15 85.5 95 43.2
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 3.5e-15 85.1 92 47.8
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 4.6e-15 84.7 95 42.1
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 4.6e-15 84.7 95 42.1
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 4.6e-15 84.7 92 44.6
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 6.0e-15 84.3 95 43.2
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 7.8e-15 84.0 98 40.8
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 7.8e-15 84.0 92 43.5
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 7.8e-15 84.0 92 43.5
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 1.0e-14 83.6 92 42.4
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 1.0e-14 83.6 92 43.5
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 1.7e-14 82.8 92 43.5
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 1.7e-14 82.8 112 38.4
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 5.1e-14 81.3 95 43.2
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 1.1e-13 80.1 107 38.3
Sc13g0003280 Simmondsia chinensis HOM05D005069 ORTHO05D006024 1.5e-13 79.7 92 40.2
CARHR286020 Cardamine hirsuta HOM05D005069 ORTHO05D006024 1.9e-13 79.3 61 67.2
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 1.9e-13 79.3 92 41.3
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 4.3e-13 78.2 95 41.1
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 9.5e-13 77.0 100 37.0
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 1.2e-12 76.6 96 38.5
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 1.6e-12 76.3 92 44.6
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 3.6e-12 75.1 96 37.5
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 4.7e-12 74.7 83 42.2
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 1.4e-11 73.2 92 43.5
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 1.4e-11 73.2 92 40.2
HanXRQChr03g0089551 Helianthus annuus HOM05D005069 ORTHO05D006024 2.3e-11 72.4 95 36.8
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 6.8e-11 70.9 92 38.0
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 2.6e-10 68.9 89 37.1
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 5.8e-10 67.8 92 39.1
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 7.6e-10 67.4 92 37.0
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 9.9e-10 67.0 92 38.0
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 1.3e-09 66.6 92 35.9
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 1.3e-09 66.6 55 54.5
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 3.8e-09 65.1 86 38.4
TPR.G29612 Trifolium pratense HOM05D005069 ORTHO05D006024 4.9e-09 64.7 93 36.6
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 6.4e-09 64.3 92 35.9
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 2.4e-08 62.4 69 47.8
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 7.1e-08 60.8 110 35.5


User provided reference genes

Program Settings