Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g30693 Brassica carinata HOM05D005991 ORTHO05D007408 1.4e-102 376.7 247 100.0
Sp2g19950 Schrenkiella parvula HOM05D005991 ORTHO05D007408 7.0e-83 311.2 253 73.9
BcaNung02118 Brassica carinata HOM05D005991 ORTHO05D007408 1.0e-81 307.4 252 73.8
C07p40040 Brassica napus HOM05D005991 ORTHO05D007408 1.0e-81 307.4 252 73.8
BraA06t26732Z Brassica rapa HOM05D005991 ORTHO05D007408 1.0e-81 307.4 253 73.9
A06p38170 Brassica napus HOM05D005991 ORTHO05D007408 6.6e-81 304.7 253 73.1
BolC7t44538H Brassica oleracea HOM05D005991 ORTHO05D007408 6.6e-81 304.7 252 73.0
Thhalv10004825m.g Eutrema salsugineum HOM05D005991 ORTHO05D007408 1.5e-80 303.5 252 79.8
Sp6g09550 Schrenkiella parvula HOM05D005991 ORTHO05D007408 5.2e-78 295.0 251 72.1
AL6G41020 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 4.9e-76 288.5 247 70.9
Aa31LG11G8380 Aethionema arabicum HOM05D005991 ORTHO05D007408 2.0e-74 283.1 251 69.3
Carub.0020s0004 Capsella rubella HOM05D005991 ORTHO05D007408 3.5e-74 282.3 247 68.8
AT5G30490 Arabidopsis thaliana HOM05D005991 ORTHO05D007408 1.3e-73 280.4 247 68.8
BcaB04g19640 Brassica carinata HOM05D005991 ORTHO05D007408 6.6e-73 278.1 252 67.1
A09p05050 Brassica napus HOM05D005991 ORTHO05D007408 1.5e-72 276.9 252 67.9
BraA09t36144Z Brassica rapa HOM05D005991 ORTHO05D007408 1.5e-72 276.9 252 67.9
C09p05460 Brassica napus HOM05D005991 ORTHO05D007408 1.0e-70 270.8 250 67.2
CARHR185530 Cardamine hirsuta HOM05D005991 ORTHO05D007408 1.3e-68 263.8 247 68.0
BcaC04g23714 Brassica carinata HOM05D005991 ORTHO05D007408 2.9e-68 262.7 250 66.4
BolC9t53475H Brassica oleracea HOM05D005991 ORTHO05D007408 5.0e-65 251.9 277 60.6
THA.LOC104827106 Tarenaya hassleriana HOM05D005991 ORTHO05D007408 4.1e-59 232.3 248 58.1
Cfa015696 Carpinus fangiana HOM05D005991 ORTHO05D007408 1.3e-52 210.7 247 51.8
Haze_00826 Corylus avellana HOM05D005991 ORTHO05D007408 1.1e-51 207.6 247 51.0
MSTRG.22639 Avicennia marina HOM05D005991 ORTHO05D007408 6.6e-49 198.4 233 51.5
GSVIVG01017637001 Vitis vinifera HOM05D005991 ORTHO05D007408 3.3e-48 196.1 240 51.2
Sed0009947 Sechium edule HOM05D005991 ORTHO05D007408 7.3e-48 194.9 235 50.6
TPR.G12610 Trifolium pratense HOM05D005991 ORTHO05D007408 7.3e-48 194.9 259 54.4
Potri.010G151300 Populus trichocarpa HOM05D005991 ORTHO05D007408 9.6e-48 194.5 248 52.0
Ca_21401_v3 Cicer arietinum L. HOM05D005991 ORTHO05D007408 2.1e-47 193.4 257 56.4
CANSAT78G1707 Cannabis sativa HOM05D005991 ORTHO05D007408 2.8e-47 193.0 228 62.7
Dinv05101 Davidia involucrata HOM05D005991 ORTHO05D007408 6.2e-47 191.8 239 49.4
QL06p013384 Quercus lobata HOM05D005991 ORTHO05D007408 8.1e-47 191.4 234 57.7
Cpa.g.sc146.66 Carica papaya HOM05D005991 ORTHO05D007408 1.4e-46 190.7 245 49.8
Psat0s2692g0080 Pisum sativum HOM05D005991 ORTHO05D007408 1.8e-46 190.3 256 51.2
Lalb_Chr13g0298761 Lupinus albus HOM05D005991 ORTHO05D007408 2.4e-46 189.9 259 50.2
Medtr4g123060 Medicago truncatula HOM05D005991 ORTHO05D007408 1.2e-45 187.6 234 53.0
Migut.I00898 Erythranthe guttata HOM05D005991 ORTHO05D007408 1.5e-45 187.2 254 47.6
MBI18_g36460_MAGBIO Magnolia biondii HOM05D005991 ORTHO05D007408 1.5e-45 187.2 228 49.1
Prupe.1G111000 Prunus persica HOM05D005991 ORTHO05D007408 2.6e-45 186.4 244 54.9
Lj4g0017646 Lotus japonicus HOM05D005991 ORTHO05D007408 3.4e-45 186.0 248 53.2
VMungo1215G0582 Vigna mungo HOM05D005991 ORTHO05D007408 4.4e-45 185.7 244 53.3
Duzib151G0057 Durio zibethinus HOM05D005991 ORTHO05D007408 5.8e-45 185.3 204 61.3
RcHm_v2.0_Chr4g0426321 Rosa chinensis HOM05D005991 ORTHO05D007408 5.8e-45 185.3 245 49.0
TWI53G1476 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 5.8e-45 185.3 236 51.3
TAR633G0953 Trochodendron aralioides HOM05D005991 ORTHO05D007408 5.8e-45 185.3 244 48.0
CsaV3_6G000060 Cucumis sativus L. HOM05D005991 ORTHO05D007408 7.6e-45 184.9 251 49.0
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 7.6e-45 184.9 252 46.0
Gohir.D02G061600 Gossypium hirsutum HOM05D005991 ORTHO05D007408 9.9e-45 184.5 253 53.0
Gorai.005G069300 Gossypium raimondii HOM05D005991 ORTHO05D007408 9.9e-45 184.5 253 53.0
Sc23g0006090 Simmondsia chinensis HOM05D005991 ORTHO05D007408 1.3e-44 184.1 229 49.8
Eucgr.H04085 Eucalyptus grandis HOM05D005991 ORTHO05D007408 2.2e-44 183.3 238 47.5
Manes.03G209000 Manihot esculenta HOM05D005991 ORTHO05D007408 2.2e-44 183.3 243 48.1
Gohir.A02G056400 Gossypium hirsutum HOM05D005991 ORTHO05D007408 2.9e-44 183.0 267 51.7
DCAR_019078 Daucus carota HOM05D005991 ORTHO05D007408 4.9e-44 182.2 254 44.9
PGR004G0142 Punica granatum HOM05D005991 ORTHO05D007408 4.9e-44 182.2 244 47.5
CSS0003210 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 6.4e-44 181.8 249 46.6
ClCG06G004330 Citrullus lanatus HOM05D005991 ORTHO05D007408 6.4e-44 181.8 253 48.2
EL10Ac2g02410 Beta vulgaris HOM05D005991 ORTHO05D007408 8.4e-44 181.4 251 47.0
Os01g0328500 Oryza sativa ssp. japonica HOM05D005991 ORTHO05D007408 8.4e-44 181.4 250 45.6
FAN17G2933 Fragaria x ananassa HOM05D005991 ORTHO05D007408 1.1e-43 181.0 245 47.8
Glyma.07G232800 Glycine max HOM05D005991 ORTHO05D007408 1.1e-43 181.0 249 49.0
TWI73G0156 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 1.1e-43 181.0 249 48.2
Zm00001eb131050 Zea mays HOM05D005991 ORTHO05D007408 1.1e-43 181.0 228 47.8
MELO3C021248.2 Cucumis melo HOM05D005991 ORTHO05D007408 1.4e-43 180.6 256 48.0
FvH4_4g20890 Fragaria vesca HOM05D005991 ORTHO05D007408 1.4e-43 180.6 245 47.3
MD13G1147500 Malus domestica HOM05D005991 ORTHO05D007408 4.2e-43 179.1 245 46.1
FAN12G0391 Fragaria x ananassa HOM05D005991 ORTHO05D007408 5.4e-43 178.7 238 48.3
FAN07G2713 Fragaria x ananassa HOM05D005991 ORTHO05D007408 7.1e-43 178.3 238 48.3
Ah.11g042100 Amaranthus hybridus HOM05D005991 ORTHO05D007408 1.2e-42 177.6 243 46.5
unitig_32.g11589 Utricularia gibba HOM05D005991 ORTHO05D007408 1.2e-42 177.6 250 46.0
vmacro19301 Vaccinium macrocarpon HOM05D005991 ORTHO05D007408 1.2e-42 177.6 231 48.9
Actinidia18486 Actinidia chinensis HOM05D005991 ORTHO05D007408 1.6e-42 177.2 207 52.2
Thecc.04G307900 Theobroma cacao HOM05D005991 ORTHO05D007408 1.6e-42 177.2 133 71.4
TWI09G0093 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 2.1e-42 176.8 247 47.4
Atru.chr4.3094 Acer truncatum HOM05D005991 ORTHO05D007408 6.0e-42 175.3 246 48.0
Oeu009727.1 Olea europaea HOM05D005991 ORTHO05D007408 6.0e-42 175.3 252 44.8
TAR362G0621 Trochodendron aralioides HOM05D005991 ORTHO05D007408 7.8e-42 174.9 228 50.0
Actinidia28298 Actinidia chinensis HOM05D005991 ORTHO05D007408 1.3e-41 174.1 246 48.0
CiPaw.01G133100 Carya illinoinensis HOM05D005991 ORTHO05D007408 2.3e-41 173.3 130 71.5
Phvul.003G118700 Phaseolus vulgaris HOM05D005991 ORTHO05D007408 2.3e-41 173.3 249 45.0
Cc10_g13510 Coffea canephora HOM05D005991 ORTHO05D007408 3.0e-41 172.9 231 55.8
Nn3g21864 Nelumbo nucifera HOM05D005991 ORTHO05D007408 3.0e-41 172.9 227 53.7
Rhsim02G0001600 Rhododendron simsii HOM05D005991 ORTHO05D007408 3.0e-41 172.9 251 47.0
Cc00_g31090 Coffea canephora HOM05D005991 ORTHO05D007408 1.1e-40 171.0 247 54.7
Aqoxy7G00454 Aquilegia oxysepala HOM05D005991 ORTHO05D007408 1.5e-40 170.6 248 48.8
Lsat_1_v5_gn_4_27741 Lactuca sativa HOM05D005991 ORTHO05D007408 1.9e-40 170.2 238 45.4
arahy.Tifrunner.gnm1.ann1.ELD4MI Arachis hypogaea HOM05D005991 ORTHO05D007408 5.6e-40 168.7 253 47.4
arahy.Tifrunner.gnm1.ann1.5JMV2K Arachis hypogaea HOM05D005991 ORTHO05D007408 7.3e-40 168.3 253 47.0
Ciclev10005452m.g Citrus clementina HOM05D005991 ORTHO05D007408 7.3e-40 168.3 244 47.1
Zm00001eb340570 Zea mays HOM05D005991 ORTHO05D007408 1.6e-39 167.2 212 47.2
MD16G1145900 Malus domestica HOM05D005991 ORTHO05D007408 2.8e-39 166.4 226 47.3
Glyma.17G037800 Glycine max HOM05D005991 ORTHO05D007408 3.6e-39 166.0 261 46.4
arahy.Tifrunner.gnm1.ann1.KWD76U Arachis hypogaea HOM05D005991 ORTHO05D007408 4.8e-39 165.6 259 51.7
PSO017G0870 Papaver somniferum HOM05D005991 ORTHO05D007408 4.8e-39 165.6 228 57.0
Peaxi162Scf00139g00312 Petunia axillaris HOM05D005991 ORTHO05D007408 1.1e-38 164.5 241 50.6
PSO675G8194 Papaver somniferum HOM05D005991 ORTHO05D007408 1.4e-38 164.1 128 68.8
Lj9A696T49 Lonicera japonica HOM05D005991 ORTHO05D007408 1.8e-38 163.7 255 43.5
ECA234G0222 Erigeron canadensis HOM05D005991 ORTHO05D007408 4.0e-38 162.5 233 44.2
Nitab4.5_0003374g0080 Nicotiana tabacum HOM05D005991 ORTHO05D007408 4.0e-38 162.5 235 47.7
HPP92_017296 Vanilla planifolia HOM05D005991 ORTHO05D007408 4.0e-38 162.5 130 66.2
HanXRQChr16g0526201 Helianthus annuus HOM05D005991 ORTHO05D007408 6.9e-38 161.8 257 42.8
ATR0693G149 Amborella trichopoda HOM05D005991 ORTHO05D007408 1.2e-37 161.0 247 51.8
Nitab4.5_0013885g0020 Nicotiana tabacum HOM05D005991 ORTHO05D007408 2.6e-37 159.8 236 43.6
COL.COLO4_34551 Corchorus olitorius HOM05D005991 ORTHO05D007408 4.4e-37 159.1 141 63.8
CAN.G1173.8 Capsicum annuum HOM05D005991 ORTHO05D007408 4.2e-35 152.5 231 45.9
Sopen04g029760 Solanum pennellii HOM05D005991 ORTHO05D007408 2.7e-34 149.8 232 40.5
PGSC0003DMG400030844 Solanum tuberosum HOM05D005991 ORTHO05D007408 2.7e-34 149.8 235 40.9
PGR119G0116 Punica granatum HOM05D005991 ORTHO05D007408 3.5e-34 149.4 128 62.5
AUR62020284 Chenopodium quinoa HOM05D005991 ORTHO05D007408 1.0e-33 147.9 126 65.9
AUR62037721 Chenopodium quinoa HOM05D005991 ORTHO05D007408 1.3e-33 147.5 126 65.1
Solyc04g074800.3 Solanum lycopersicum HOM05D005991 ORTHO05D007408 1.1e-32 144.4 239 39.7
Mapoly0030s0047 Marchantia polymorpha HOM05D005991 ORTHO05D007408 2.9e-28 129.8 133 52.6
SEGI_07358 Sequoiadendron giganteum HOM05D005991 ORTHO05D007408 9.3e-27 124.8 130 50.8
arahy.Tifrunner.gnm1.ann1.FWR109 Arachis hypogaea HOM05D005991 ORTHO05D007408 3.0e-25 119.8 128 57.8
Cre14.g632600 Chlamydomonas reinhardtii HOM05D005991 ORTHO05D007408 8.1e-23 111.7 131 47.3
Pp3c5_15500 Physcomitrium patens HOM05D005991 ORTHO05D007408 9.0e-22 108.2 148 42.6
AagrBONN_evm.TU.Sc2ySwM_117.1275 Anthoceros agrestis HOM05D005991 ORTHO05D007408 2.0e-21 107.1 125 48.8
CBR_g56129 Chara braunii HOM05D005991 ORTHO05D007408 2.0e-21 107.1 135 45.2
SMO203G0019 Selaginella moellendorffii HOM05D005991 ORTHO05D007408 1.4e-19 100.9 80 63.8
CSS0020858 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 4.3e-16 89.4 77 64.9
CDE05G0304 Ceratophyllum demersum HOM05D005991 ORTHO05D007408 2.6e-13 80.1 170 37.6
MCO08G234 Micromonas commoda HOM05D005991 ORTHO05D007408 2.2e-12 77.0 212 29.2
AL1G65220 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 1.9e-08 63.9 61 65.6
PRCOL_00003370 Prasinoderma coloniale HOM05D005991 ORTHO05D007408 9.0e-06 55.1 132 31.8


User provided reference genes

Program Settings