Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 1.5e-104 382.9 198 100.0
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 5.1e-92 341.3 196 90.8
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 5.6e-91 337.8 196 90.3
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 5.6e-91 337.8 196 90.3
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 3.6e-90 335.1 196 89.8
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 8.1e-90 334.0 196 89.3
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 8.1e-82 307.4 197 80.7
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 1.8e-81 306.2 197 79.7
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 2.4e-78 295.8 196 78.6
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 1.5e-75 286.6 201 78.6
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 9.6e-75 283.9 197 76.1
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 2.8e-74 282.3 197 75.1
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 6.2e-74 281.2 198 76.3
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 8.1e-74 280.8 198 75.8
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 8.1e-74 280.8 198 75.8
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 8.1e-74 280.8 198 75.8
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 1.8e-73 279.6 198 75.3
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 9.9e-72 273.9 196 75.5
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 4.9e-71 271.6 198 74.7
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 3.2e-70 268.9 203 72.4
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 6.0e-69 264.6 202 72.3
C01p15160 Brassica napus HOM05D004361 ORTHO05D004706 2.5e-62 242.7 174 73.6
BcaB03g11696 Brassica carinata HOM05D004361 ORTHO05D004706 5.5e-62 241.5 176 72.7
BcaC01g00706 Brassica carinata HOM05D004361 ORTHO05D004706 7.1e-62 241.1 173 73.4
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 2.4e-49 199.5 199 58.8
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 2.9e-39 166.0 191 55.5
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 2.9e-31 139.4 190 47.9
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 2.5e-22 109.8 190 45.3
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 1.2e-21 107.5 177 43.5
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 8.0e-21 104.8 175 42.9
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 1.2e-19 100.9 184 43.5
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 1.5e-19 100.5 181 41.4
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 2.0e-19 100.1 181 43.1
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 2.6e-19 99.8 186 43.5
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 5.7e-19 98.6 182 40.7
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 9.8e-19 97.8 180 46.1
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 9.8e-19 97.8 183 44.8
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 1.7e-18 97.1 180 41.1
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 3.7e-18 95.9 177 42.4
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 4.8e-18 95.5 176 40.3
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 4.8e-18 95.5 183 44.3
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 4.8e-18 95.5 176 43.8
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 4.8e-18 95.5 186 38.2
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 6.3e-18 95.1 183 39.3
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 6.3e-18 95.1 187 42.8
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 8.3e-18 94.7 187 42.8
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 1.4e-17 94.0 201 37.3
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 1.8e-17 93.6 182 42.9
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 2.4e-17 93.2 177 41.8
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 2.4e-17 93.2 186 39.8
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 4.1e-17 92.4 174 42.5
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 5.4e-17 92.0 184 40.2
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 7.0e-17 91.7 178 41.0
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 1.6e-16 90.5 177 40.1
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 1.6e-16 90.5 183 39.9
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 2.7e-16 89.7 183 41.5
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 3.5e-16 89.4 201 39.8
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 4.5e-16 89.0 179 40.8
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 5.9e-16 88.6 178 41.0
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 7.7e-16 88.2 185 37.3
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.0e-15 87.8 171 40.9
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 1.0e-15 87.8 191 38.2
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 1.0e-15 87.8 185 38.4
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 1.3e-15 87.4 155 45.2
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 1.3e-15 87.4 192 40.1
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 1.3e-15 87.4 177 39.5
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 1.7e-15 87.0 185 40.0
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 1.7e-15 87.0 155 45.8
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 1.7e-15 87.0 188 39.9
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 2.2e-15 86.7 170 40.0
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 2.2e-15 86.7 174 39.1
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.9e-15 86.3 180 42.2
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 2.9e-15 86.3 187 39.6
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.8e-15 85.9 179 40.2
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 3.8e-15 85.9 199 37.7
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 5.0e-15 85.5 183 36.1
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 5.0e-15 85.5 172 42.4
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 6.5e-15 85.1 171 42.1
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 6.5e-15 85.1 186 41.4
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 6.5e-15 85.1 176 39.2
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 6.5e-15 85.1 173 39.9
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 6.5e-15 85.1 173 41.0
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 8.5e-15 84.7 178 39.9
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 8.5e-15 84.7 178 37.1
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 8.5e-15 84.7 175 38.9
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 1.1e-14 84.3 176 39.8
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.5e-14 84.0 185 37.8
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 1.5e-14 84.0 176 40.3
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 1.9e-14 83.6 150 44.0
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 1.9e-14 83.6 181 37.6
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 1.9e-14 83.6 180 39.4
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 7.2e-14 81.6 176 37.5
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 7.2e-14 81.6 179 41.3
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 7.2e-14 81.6 180 41.1
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 7.2e-14 81.6 176 37.5
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 9.4e-14 81.3 178 36.5
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 9.4e-14 81.3 173 39.3
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 1.2e-13 80.9 184 38.6
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.2e-13 80.9 186 40.3
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 1.2e-13 80.9 174 40.2
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 1.6e-13 80.5 179 42.5
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 1.6e-13 80.5 182 38.5
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 1.6e-13 80.5 204 33.8
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 4.7e-13 79.0 175 35.4
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 4.7e-13 79.0 187 40.6
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 6.1e-13 78.6 182 38.5
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 6.1e-13 78.6 191 37.2
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 1.4e-12 77.4 173 38.2
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 2.3e-12 76.6 152 38.2
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 2.3e-12 76.6 177 37.3
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 3.0e-12 76.3 179 36.3
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 8.8e-12 74.7 177 36.7
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 1.2e-11 74.3 174 36.8
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 1.2e-11 74.3 166 39.8
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 1.5e-11 73.9 181 36.5
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 1.5e-11 73.9 177 35.6
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.0e-11 73.6 173 35.3
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 2.0e-11 73.6 173 35.3
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 2.6e-11 73.2 180 37.2
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 3.4e-11 72.8 170 37.6
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 4.4e-11 72.4 171 36.8
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 4.4e-11 72.4 181 39.8
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 5.7e-11 72.0 167 40.1
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 1.7e-10 70.5 178 37.6
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 4.9e-10 68.9 181 37.0
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 4.9e-10 68.9 169 36.1
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 2.4e-09 66.6 179 39.1
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.1e-09 66.2 173 35.8
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 3.1e-09 66.2 175 37.7
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 5.4e-09 65.5 175 41.1
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 7.0e-09 65.1 177 36.7
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 3.5e-08 62.8 173 34.7
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 4.5e-08 62.4 166 38.0
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 5.9e-08 62.0 144 42.4
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 1.0e-07 61.2 168 33.9
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 1.0e-07 61.2 167 40.1
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 1.3e-07 60.8 174 35.1
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 1.1e-06 57.8 58 53.4
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 1.5e-06 57.4 170 34.1
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 1.9e-06 57.0 159 37.7
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 4.3e-06 55.8 177 31.1
ATR0762G059 Amborella trichopoda HOM05D009517 ORTHO05D011612 4.3e-06 55.8 203 29.1
Nn1g03641 Nelumbo nucifera HOM05D004361 ORTHO05D004706 7.3e-06 55.1 49 53.1
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 7.3e-06 55.1 163 34.4


User provided reference genes

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