Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g30648 Brassica carinata HOM05D005256 ORTHO05D006491 8.3e-81 304.3 175 100.0
BcaC09g51326 Brassica carinata HOM05D005256 ORTHO05D006491 2.0e-74 283.1 175 92.0
C01p14230 Brassica napus HOM05D005256 ORTHO05D006491 2.0e-74 283.1 175 92.0
BolC1t01388H Brassica oleracea HOM05D005256 ORTHO05D006491 2.0e-74 283.1 175 92.0
BolC7t45581H Brassica oleracea HOM05D005256 ORTHO05D006491 1.7e-73 280.0 173 93.6
BcaNung03497 Brassica carinata HOM05D005256 ORTHO05D006491 2.2e-73 279.6 173 94.2
C07p50830 Brassica napus HOM05D005256 ORTHO05D006491 8.3e-73 277.7 173 89.0
A03p52380 Brassica napus HOM05D005256 ORTHO05D006491 7.0e-72 274.6 179 91.1
BraA01t01138Z Brassica rapa HOM05D005256 ORTHO05D006491 9.2e-72 274.2 187 86.1
BraA03t14315Z Brassica rapa HOM05D005256 ORTHO05D006491 9.2e-72 274.2 179 91.1
A01p11960 Brassica napus HOM05D005256 ORTHO05D006491 4.6e-71 271.9 181 87.3
Thhalv10026094m.g Eutrema salsugineum HOM05D005256 ORTHO05D006491 1.9e-69 266.5 181 85.1
Sp7g18620 Schrenkiella parvula HOM05D005256 ORTHO05D006491 2.5e-69 266.2 186 83.9
AT4G20260 Arabidopsis thaliana HOM05D005256 ORTHO05D006491 2.1e-68 263.1 175 87.4
CARHR227090 Cardamine hirsuta HOM05D005256 ORTHO05D006491 6.8e-67 258.1 175 81.1
AL7G33640 Arabidopsis lyrata HOM05D005256 ORTHO05D006491 1.2e-66 257.3 175 85.7
Carub.0007s2091 Capsella rubella HOM05D005256 ORTHO05D006491 7.0e-64 248.1 174 82.8
BcaNung03716 Brassica carinata HOM05D005256 ORTHO05D006491 4.6e-63 245.4 171 87.1
Aa31LG6G2690 Aethionema arabicum HOM05D005256 ORTHO05D006491 1.0e-54 217.6 181 67.4
THA.LOC104811953 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 6.4e-49 198.4 172 69.2
THA.LOC104812925 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 5.4e-48 195.3 148 70.3
Potri.003G157100 Populus trichocarpa HOM05D005256 ORTHO05D006491 1.9e-45 186.8 152 63.8
Sabra03G0114000 Salix brachista HOM05D005256 ORTHO05D006491 3.3e-45 186.0 148 64.2
Sabra01G0052200 Salix brachista HOM05D005256 ORTHO05D006491 2.1e-44 183.3 148 64.2
Manes.16G060225 Manihot esculenta HOM05D005256 ORTHO05D006491 1.1e-43 181.0 133 71.4
Potri.001G073900 Populus trichocarpa HOM05D005256 ORTHO05D006491 1.8e-43 180.3 149 63.8
A06p47070 Brassica napus HOM05D005256 ORTHO05D006491 3.4e-42 176.0 179 61.5
BraA06t27579Z Brassica rapa HOM05D005256 ORTHO05D006491 3.4e-42 176.0 179 61.5
C07p27480 Brassica napus HOM05D005256 ORTHO05D006491 4.4e-42 175.6 179 61.5
Atru.chr10.203 Acer truncatum HOM05D005256 ORTHO05D006491 5.8e-42 175.3 175 53.7
BcaC06g34533 Brassica carinata HOM05D005256 ORTHO05D006491 7.6e-42 174.9 179 60.9
ATR0737G015 Amborella trichopoda HOM05D005256 ORTHO05D006491 9.9e-42 174.5 154 62.3
Peaxi162Scf00888g00114 Petunia axillaris HOM05D005256 ORTHO05D006491 1.7e-41 173.7 141 61.7
BolC7t43278H Brassica oleracea HOM05D005256 ORTHO05D006491 2.2e-41 173.3 179 60.9
Cpa.g.sc30.65 Carica papaya HOM05D005256 ORTHO05D006491 4.9e-41 172.2 126 67.5
Medtr2g437530 Medicago truncatula HOM05D005256 ORTHO05D006491 6.4e-41 171.8 176 55.1
Ciclev10016618m.g Citrus clementina HOM05D005256 ORTHO05D006491 8.4e-41 171.4 140 67.1
Solyc10g005100.3 Solanum lycopersicum HOM05D005256 ORTHO05D006491 8.4e-41 171.4 150 58.0
Sopen10g001120 Solanum pennellii HOM05D005256 ORTHO05D006491 8.4e-41 171.4 140 60.7
TWI63G0333 Tripterygium wilfordii HOM05D005256 ORTHO05D006491 8.4e-41 171.4 148 59.5
PGSC0003DMG400011293 Solanum tuberosum HOM05D005256 ORTHO05D006491 1.4e-40 170.6 172 52.9
BcaC04g21824 Brassica carinata HOM05D005256 ORTHO05D006491 2.4e-40 169.9 183 57.9
C09p27010 Brassica napus HOM05D005256 ORTHO05D006491 2.4e-40 169.9 183 57.9
BolC9t55584H Brassica oleracea HOM05D005256 ORTHO05D006491 2.4e-40 169.9 183 57.9
Eucgr.D00001 Eucalyptus grandis HOM05D005256 ORTHO05D006491 2.4e-40 169.9 143 64.3
Glyma.15G154700 Glycine max HOM05D005256 ORTHO05D006491 4.2e-40 169.1 149 62.4
Nitab4.5_0004778g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 5.4e-40 168.7 144 61.8
GSVIVG01001340001 Vitis vinifera HOM05D005256 ORTHO05D006491 5.4e-40 168.7 133 65.4
CAN.G465.5 Capsicum annuum HOM05D005256 ORTHO05D006491 7.1e-40 168.3 137 62.8
Glyma.09G047200 Glycine max HOM05D005256 ORTHO05D006491 7.1e-40 168.3 148 62.2
MD05G1242300 Malus domestica HOM05D005256 ORTHO05D006491 7.1e-40 168.3 141 62.4
Nn1g09867 Nelumbo nucifera HOM05D005256 ORTHO05D006491 7.1e-40 168.3 143 60.8
TPR.G31382 Trifolium pratense HOM05D005256 ORTHO05D006491 7.1e-40 168.3 172 55.8
Aa31LG9G8540 Aethionema arabicum HOM05D005256 ORTHO05D006491 1.2e-39 167.5 175 55.4
CANSAT35G0328 Cannabis sativa HOM05D005256 ORTHO05D006491 1.2e-39 167.5 138 59.4
BcaB07g30517 Brassica carinata HOM05D005256 ORTHO05D006491 1.6e-39 167.2 180 59.4
CSS0021462 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 2.1e-39 166.8 142 61.3
Psat1g152160 Pisum sativum HOM05D005256 ORTHO05D006491 2.1e-39 166.8 170 54.7
arahy.Tifrunner.gnm1.ann1.QDE700 Arachis hypogaea HOM05D005256 ORTHO05D006491 2.7e-39 166.4 140 60.7
A09p21180 Brassica napus HOM05D005256 ORTHO05D006491 2.7e-39 166.4 154 64.3
BraA09t37724Z Brassica rapa HOM05D005256 ORTHO05D006491 2.7e-39 166.4 154 64.3
MD10G1224100 Malus domestica HOM05D005256 ORTHO05D006491 3.5e-39 166.0 151 60.9
CiPaw.09G140800 Carya illinoinensis HOM05D005256 ORTHO05D006491 4.6e-39 165.6 135 62.2
Dinv07938 Davidia involucrata HOM05D005256 ORTHO05D006491 4.6e-39 165.6 140 60.0
Dinv18415 Davidia involucrata HOM05D005256 ORTHO05D006491 4.6e-39 165.6 140 60.0
Haze_05185 Corylus avellana HOM05D005256 ORTHO05D006491 6.0e-39 165.2 148 60.1
TAR626G1126 Trochodendron aralioides HOM05D005256 ORTHO05D006491 7.8e-39 164.9 130 64.6
Ca_02405_v3 Cicer arietinum L. HOM05D005256 ORTHO05D006491 1.7e-38 163.7 178 53.9
arahy.Tifrunner.gnm1.ann1.98CSRD Arachis hypogaea HOM05D005256 ORTHO05D006491 3.0e-38 162.9 135 62.2
QL11p010746 Quercus lobata HOM05D005256 ORTHO05D006491 3.0e-38 162.9 149 58.4
EL10Ac7g17298 Beta vulgaris HOM05D005256 ORTHO05D006491 5.1e-38 162.2 172 52.3
Lj6g0014214 Lotus japonicus HOM05D005256 ORTHO05D006491 5.1e-38 162.2 147 59.9
Lsat_1_v5_gn_2_59820 Lactuca sativa HOM05D005256 ORTHO05D006491 2.5e-37 159.8 149 56.4
Oeu052922.1 Olea europaea HOM05D005256 ORTHO05D006491 2.5e-37 159.8 178 51.7
Oeu005126.1 Olea europaea HOM05D005256 ORTHO05D006491 3.3e-37 159.5 176 52.8
TAR624G1249 Trochodendron aralioides HOM05D005256 ORTHO05D006491 3.3e-37 159.5 171 53.8
CSS0003949 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 4.3e-37 159.1 133 59.4
CiPaw.10G108500 Carya illinoinensis HOM05D005256 ORTHO05D006491 7.3e-37 158.3 135 60.7
AUR62040985 Chenopodium quinoa HOM05D005256 ORTHO05D006491 7.3e-37 158.3 139 58.3
BcaB07g30940 Brassica carinata HOM05D005256 ORTHO05D006491 1.3e-36 157.5 153 62.1
FvH4_3g13370 Fragaria vesca HOM05D005256 ORTHO05D006491 2.1e-36 156.8 152 58.6
FAN11G1371 Fragaria x ananassa HOM05D005256 ORTHO05D006491 2.1e-36 156.8 152 58.6
Rhsim13G0136300 Rhododendron simsii HOM05D005256 ORTHO05D006491 2.1e-36 156.8 150 55.3
FAN25G1093 Fragaria x ananassa HOM05D005256 ORTHO05D006491 6.2e-36 155.2 152 57.9
Phvul.009G245700 Phaseolus vulgaris HOM05D005256 ORTHO05D006491 6.2e-36 155.2 148 56.1
Ah.15g091820 Amaranthus hybridus HOM05D005256 ORTHO05D006491 8.1e-36 154.8 148 54.7
COL.COLO4_25022 Corchorus olitorius HOM05D005256 ORTHO05D006491 8.1e-36 154.8 132 61.4
Prupe.4G121100 Prunus persica HOM05D005256 ORTHO05D006491 8.1e-36 154.8 134 61.9
Hund20133 Selenicereus undatus HOM05D005256 ORTHO05D006491 8.1e-36 154.8 142 56.3
FAN21G0853 Fragaria x ananassa HOM05D005256 ORTHO05D006491 1.1e-35 154.5 152 57.9
HanXRQChr14g0439031 Helianthus annuus HOM05D005256 ORTHO05D006491 1.4e-35 154.1 151 53.6
vmacro03574 Vaccinium macrocarpon HOM05D005256 ORTHO05D006491 1.4e-35 154.1 142 57.7
FAN16G0515 Fragaria x ananassa HOM05D005256 ORTHO05D006491 1.8e-35 153.7 149 57.0
Hma1.2p1_0082F.1_g042560 Hydrangea macrophylla HOM05D005256 ORTHO05D006491 1.8e-35 153.7 176 51.1
ECA232G1901 Erigeron canadensis HOM05D005256 ORTHO05D006491 2.4e-35 153.3 130 60.8
HanXRQChr15g0487481 Helianthus annuus HOM05D005256 ORTHO05D006491 2.4e-35 153.3 130 59.2
MBI07_g44405_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 2.4e-35 153.3 135 58.5
RcHm_v2.0_Chr5g0022081 Rosa chinensis HOM05D005256 ORTHO05D006491 2.4e-35 153.3 149 57.7
SalBow7G1744 Salvia bowleyana HOM05D005256 ORTHO05D006491 6.9e-35 151.8 175 50.3
Lsat_1_v5_gn_8_107621 Lactuca sativa HOM05D005256 ORTHO05D006491 2.6e-34 149.8 130 57.7
Cc09_g04590 Coffea canephora HOM05D005256 ORTHO05D006491 3.4e-34 149.4 169 50.3
Sp2g09430 Schrenkiella parvula HOM05D005256 ORTHO05D006491 4.5e-34 149.1 154 59.7
ECA238G2220 Erigeron canadensis HOM05D005256 ORTHO05D006491 7.6e-34 148.3 130 59.2
MSTRG.14820 Avicennia marina HOM05D005256 ORTHO05D006491 9.9e-34 147.9 144 56.2
HPP92_008810 Vanilla planifolia HOM05D005256 ORTHO05D006491 1.3e-33 147.5 131 60.3
CDE10G1097 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 1.7e-33 147.1 142 56.3
Lalb_Chr18g0051841 Lupinus albus HOM05D005256 ORTHO05D006491 1.7e-33 147.1 173 51.4
Sc17g0004300 Simmondsia chinensis HOM05D005256 ORTHO05D006491 2.9e-33 146.4 147 54.4
Lalb_Chr15g0083621 Lupinus albus HOM05D005256 ORTHO05D006491 4.9e-33 145.6 135 57.8
Migut.L00006 Erythranthe guttata HOM05D005256 ORTHO05D006491 6.4e-33 145.2 130 56.2
MBI06_g04184_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 1.4e-32 144.1 148 50.0
CDE10G0480 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 1.9e-32 143.7 135 57.0
FAN25G0981 Fragaria x ananassa HOM05D005256 ORTHO05D006491 3.2e-32 142.9 152 55.9
Thecc.02G000700 Theobroma cacao HOM05D005256 ORTHO05D006491 5.4e-32 142.1 126 58.7
C02p45090 Brassica napus HOM05D005256 ORTHO05D006491 7.1e-32 141.7 180 54.4
BolC2t10548H Brassica oleracea HOM05D005256 ORTHO05D006491 7.1e-32 141.7 180 54.4
CDE02G1470 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 7.1e-32 141.7 138 54.3
VMungo1309G1298 Vigna mungo HOM05D005256 ORTHO05D006491 1.2e-31 141.0 134 57.5
Peaxi162Scf01310g00311 Petunia axillaris HOM05D005256 ORTHO05D006491 6.0e-31 138.7 135 53.3
PSO675G8904 Papaver somniferum HOM05D005256 ORTHO05D006491 3.0e-30 136.3 178 51.7
PSO541G2657 Papaver somniferum HOM05D005256 ORTHO05D006491 6.7e-30 135.2 178 51.7
AUR62042105 Chenopodium quinoa HOM05D005256 ORTHO05D006491 3.3e-29 132.9 165 49.7
HanXRQChr09g0257711 Helianthus annuus HOM05D005256 ORTHO05D006491 4.3e-29 132.5 130 53.1
Os02g0285300 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 1.8e-27 127.1 143 51.7
CDE09G1225 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 2.0e-26 123.6 138 48.6
Nitab4.5_0000217g0040 Nicotiana tabacum HOM05D005256 ORTHO05D006491 7.6e-26 121.7 135 50.4
Nitab4.5_0012748g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 3.8e-25 119.4 104 59.6
DCAR_003732 Daucus carota HOM05D005256 ORTHO05D006491 1.4e-24 117.5 130 46.9
Zm00001eb339340 Zea mays HOM05D005256 ORTHO05D006491 2.1e-23 113.6 148 48.0
Nitab4.5_0001253g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 2.7e-23 113.2 164 43.3
Os01g0233000 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 1.1e-21 107.8 145 47.6
Zm00001eb119130 Zea mays HOM05D005256 ORTHO05D006491 1.5e-21 107.5 131 48.9
Zm00001eb236850 Zea mays HOM05D005256 ORTHO05D006491 4.8e-20 102.4 107 54.2
MBI06_g26562_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 2.4e-19 100.1 109 49.5
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 6.0e-15 85.5 67 65.7
Lalb_Chr20g0114421 Lupinus albus HOM05D005256 ORTHO05D006491 4.3e-13 79.3 108 45.4
Lsat_1_v5_gn_9_9820 Lactuca sativa HOM05D005256 ORTHO05D006491 2.2e-12 77.0 135 40.0
Zm00001eb381370 Zea mays HOM05D005256 ORTHO05D006491 7.2e-08 62.0 78 52.6


User provided reference genes

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