Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g30611 Brassica carinata HOM05D005964 ORTHO05D007242 6.7e-168 594.0 304 100.0
BcaNung03076 Brassica carinata HOM05D005964 ORTHO05D007242 4.6e-153 544.7 304 91.4
BolC7t45529H Brassica oleracea HOM05D005964 ORTHO05D007242 2.8e-150 535.4 317 87.7
Sp7g17840 Schrenkiella parvula HOM05D005964 ORTHO05D007242 4.6e-145 518.1 305 87.9
Thhalv10025843m.g Eutrema salsugineum HOM05D005964 ORTHO05D007242 2.0e-143 512.7 305 86.6
BraA03t14264Z Brassica rapa HOM05D005964 ORTHO05D007242 5.7e-143 511.1 323 83.3
BcaC09g51437 Brassica carinata HOM05D005964 ORTHO05D007242 2.9e-139 498.8 304 82.6
BcaNung04009 Brassica carinata HOM05D005964 ORTHO05D007242 2.9e-139 498.8 302 83.8
AT4G19140 Arabidopsis thaliana HOM05D005964 ORTHO05D007242 5.5e-138 494.6 305 82.0
A01p11100 Brassica napus HOM05D005964 ORTHO05D007242 5.5e-138 494.6 316 80.4
BraA01t01056Z Brassica rapa HOM05D005964 ORTHO05D007242 5.5e-138 494.6 316 80.4
Carub.0007s2201 Capsella rubella HOM05D005964 ORTHO05D007242 2.1e-137 492.7 305 80.3
AL7G34950 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 3.6e-137 491.9 305 82.3
C01p13130 Brassica napus HOM05D005964 ORTHO05D007242 1.4e-136 490.0 316 79.4
BolC1t01286H Brassica oleracea HOM05D005964 ORTHO05D007242 1.4e-136 490.0 316 79.4
CARHR226010 Cardamine hirsuta HOM05D005964 ORTHO05D007242 4.8e-134 481.5 306 81.7
Aa31LG6G1830 Aethionema arabicum HOM05D005964 ORTHO05D007242 1.5e-127 459.9 314 74.5
C07p50270 Brassica napus HOM05D005964 ORTHO05D007242 2.3e-120 436.0 304 78.3
A03p51750 Brassica napus HOM05D005964 ORTHO05D007242 5.2e-112 408.3 304 75.3
THA.LOC104811073 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 2.0e-111 406.4 301 70.4
Gohir.A03G000012 Gossypium hirsutum HOM05D005964 ORTHO05D007242 8.0e-89 331.3 281 58.0
Thecc.03G317600 Theobroma cacao HOM05D005964 ORTHO05D007242 1.4e-88 330.5 281 56.9
Duzib205G1143 Durio zibethinus HOM05D005964 ORTHO05D007242 1.8e-88 330.1 281 58.0
Gohir.A08G150100 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.1e-85 320.9 288 56.2
Gohir.D03G177900 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.2e-84 317.4 303 54.1
Gorai.003G187200 Gossypium raimondii HOM05D005964 ORTHO05D007242 1.2e-84 317.4 303 54.1
Gorai.004G178600 Gossypium raimondii HOM05D005964 ORTHO05D007242 1.2e-84 317.4 288 56.2
Dinv28013 Davidia involucrata HOM05D005964 ORTHO05D007242 1.3e-83 313.9 289 55.0
CANSAT21G0049 Cannabis sativa HOM05D005964 ORTHO05D007242 1.9e-82 310.1 282 55.7
Ciclev10002048m.g Citrus clementina HOM05D005964 ORTHO05D007242 2.5e-82 309.7 280 53.9
THA.LOC104806194 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 7.3e-82 308.1 257 63.8
Cfa012590 Carpinus fangiana HOM05D005964 ORTHO05D007242 9.5e-82 307.8 299 52.2
Duzib084G0482 Durio zibethinus HOM05D005964 ORTHO05D007242 9.5e-82 307.8 299 54.8
CiPaw.11G103200 Carya illinoinensis HOM05D005964 ORTHO05D007242 2.3e-80 303.1 295 53.9
Manes.17G003600 Manihot esculenta HOM05D005964 ORTHO05D007242 1.2e-79 300.8 286 53.1
Potri.001G130900 Populus trichocarpa HOM05D005964 ORTHO05D007242 1.5e-79 300.4 285 54.7
Potri.003G103000 Populus trichocarpa HOM05D005964 ORTHO05D007242 1.7e-78 297.0 282 53.5
Atru.chr6.1471 Acer truncatum HOM05D005964 ORTHO05D007242 6.4e-78 295.0 281 53.4
Gohir.D08G171200 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.4e-77 293.9 244 59.4
Lj8A334G75 Lonicera japonica HOM05D005964 ORTHO05D007242 1.4e-77 293.9 299 51.8
Actinidia14743 Actinidia chinensis HOM05D005964 ORTHO05D007242 7.1e-77 291.6 299 50.5
MELO3C013795.2 Cucumis melo HOM05D005964 ORTHO05D007242 7.1e-77 291.6 299 49.5
CsaV3_3G001060 Cucumis sativus L. HOM05D005964 ORTHO05D007242 1.6e-76 290.4 299 49.2
Sed0000446 Sechium edule HOM05D005964 ORTHO05D007242 3.5e-76 289.3 299 48.5
Prupe.5G020400 Prunus persica HOM05D005964 ORTHO05D007242 6.0e-76 288.5 299 49.2
Oeu046805.1 Olea europaea HOM05D005964 ORTHO05D007242 1.7e-75 287.0 299 50.8
Peaxi162Scf02295g00024 Petunia axillaris HOM05D005964 ORTHO05D007242 1.7e-75 287.0 303 52.5
Dinv22873 Davidia involucrata HOM05D005964 ORTHO05D007242 2.3e-75 286.6 276 53.6
MD06G1015300 Malus domestica HOM05D005964 ORTHO05D007242 3.9e-75 285.8 300 50.0
MD00G1001800 Malus domestica HOM05D005964 ORTHO05D007242 8.6e-75 284.6 299 49.8
Hma1.2p1_0544F.1_g175520 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 1.9e-74 283.5 274 52.2
Nitab4.5_0000030g0090 Nicotiana tabacum HOM05D005964 ORTHO05D007242 1.9e-74 283.5 297 50.5
Actinidia18160 Actinidia chinensis HOM05D005964 ORTHO05D007242 3.3e-74 282.7 299 48.8
FAN13G2421 Fragaria x ananassa HOM05D005964 ORTHO05D007242 3.3e-74 282.7 278 50.4
CSS0036776 Camellia sinensis var. sinensis HOM05D005964 ORTHO05D007242 7.3e-74 281.6 218 57.8
FvH4_5g23960 Fragaria vesca HOM05D005964 ORTHO05D007242 7.3e-74 281.6 278 50.0
FAN18G2518 Fragaria x ananassa HOM05D005964 ORTHO05D007242 2.8e-73 279.6 278 49.6
RcHm_v2.0_Chr7g0213391 Rosa chinensis HOM05D005964 ORTHO05D007242 6.2e-73 278.5 278 49.6
Nitab4.5_0002930g0010 Nicotiana tabacum HOM05D005964 ORTHO05D007242 8.1e-73 278.1 297 49.8
GSVIVG01022785001 Vitis vinifera HOM05D005964 ORTHO05D007242 3.1e-72 276.2 253 56.1
Cc08_g05080 Coffea canephora HOM05D005964 ORTHO05D007242 4.0e-72 275.8 232 56.5
PGR042G2449 Punica granatum HOM05D005964 ORTHO05D007242 4.0e-72 275.8 293 50.9
Eucgr.E01230 Eucalyptus grandis HOM05D005964 ORTHO05D007242 1.1e-69 267.7 279 49.1
Eucgr.E01239 Eucalyptus grandis HOM05D005964 ORTHO05D007242 1.1e-69 267.7 279 49.1
Migut.E01349 Erythranthe guttata HOM05D005964 ORTHO05D007242 1.9e-69 266.9 298 48.7
Sabra03G0070200 Salix brachista HOM05D005964 ORTHO05D007242 2.4e-69 266.5 224 57.6
Solyc08g075770.3 Solanum lycopersicum HOM05D005964 ORTHO05D007242 2.4e-69 266.5 286 49.3
Sopen08g024420 Solanum pennellii HOM05D005964 ORTHO05D007242 3.2e-69 266.2 286 49.3
TWI12G1028 Tripterygium wilfordii HOM05D005964 ORTHO05D007242 4.2e-69 265.8 262 53.1
Glyma.09G213600 Glycine max HOM05D005964 ORTHO05D007242 7.1e-69 265.0 301 46.5
Lalb_Chr05g0215451 Lupinus albus HOM05D005964 ORTHO05D007242 1.2e-68 264.2 308 46.8
arahy.Tifrunner.gnm1.ann1.NL6YXC Arachis hypogaea HOM05D005964 ORTHO05D007242 7.8e-68 261.5 276 48.9
arahy.Tifrunner.gnm1.ann1.PBCI2P Arachis hypogaea HOM05D005964 ORTHO05D007242 7.8e-68 261.5 276 48.9
Glyma.01G149400 Glycine max HOM05D005964 ORTHO05D007242 1.0e-67 261.2 297 46.8
HanXRQChr13g0412031 Helianthus annuus HOM05D005964 ORTHO05D007242 1.0e-67 261.2 274 49.6
MSTRG.1771 Avicennia marina HOM05D005964 ORTHO05D007242 3.0e-67 259.6 283 48.4
Lsat_1_v5_gn_5_58981 Lactuca sativa HOM05D005964 ORTHO05D007242 3.0e-67 259.6 293 47.4
TAR381G0569 Trochodendron aralioides HOM05D005964 ORTHO05D007242 3.0e-67 259.6 299 45.2
ECA240G3292 Erigeron canadensis HOM05D005964 ORTHO05D007242 5.1e-67 258.8 275 49.5
Lj2g0015502 Lotus japonicus HOM05D005964 ORTHO05D007242 1.9e-66 256.9 285 48.4
VMungo1215G0316 Vigna mungo HOM05D005964 ORTHO05D007242 2.5e-66 256.5 285 47.7
Psat2g142160 Pisum sativum HOM05D005964 ORTHO05D007242 5.6e-66 255.4 277 48.7
Medtr5g026860 Medicago truncatula HOM05D005964 ORTHO05D007242 7.3e-66 255.0 283 48.1
unitig_899.g14736 Utricularia gibba HOM05D005964 ORTHO05D007242 1.3e-65 254.2 271 50.2
EL10Ac5g11971 Beta vulgaris HOM05D005964 ORTHO05D007242 1.1e-64 251.1 268 49.3
TPR.G17260 Trifolium pratense HOM05D005964 ORTHO05D007242 3.1e-64 249.6 286 47.2
Sc01g0007030 Simmondsia chinensis HOM05D005964 ORTHO05D007242 1.2e-63 247.7 260 49.2
SGA_v2.0_scaffold111G31365 Striga asiatica HOM05D005964 ORTHO05D007242 4.9e-62 242.3 263 48.3
Rhsim07G0138900 Rhododendron simsii HOM05D005964 ORTHO05D007242 2.7e-60 236.5 382 37.4
MBI04_g27277_MAGBIO Magnolia biondii HOM05D005964 ORTHO05D007242 6.0e-60 235.3 292 43.8
AUR62018605 Chenopodium quinoa HOM05D005964 ORTHO05D007242 2.3e-59 233.4 245 47.3
AUR62007382 Chenopodium quinoa HOM05D005964 ORTHO05D007242 9.6e-58 228.0 222 50.5
Nn1g02066 Nelumbo nucifera HOM05D005964 ORTHO05D007242 2.8e-57 226.5 206 56.3
Hma1.2p1_0544F.1_g175510 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 6.2e-57 225.3 205 56.6
QL12p001050 Quercus lobata HOM05D005964 ORTHO05D007242 6.2e-57 225.3 210 57.6
SalBow8G2874 Salvia bowleyana HOM05D005964 ORTHO05D007242 4.0e-56 222.6 192 58.3
Aqoxy7G00888 Aquilegia oxysepala HOM05D005964 ORTHO05D007242 6.9e-56 221.9 237 46.0
Phvul.002G128700 Phaseolus vulgaris HOM05D005964 ORTHO05D007242 5.8e-55 218.8 218 50.5
FAN18G4345 Fragaria x ananassa HOM05D005964 ORTHO05D007242 1.3e-54 217.6 184 57.6
HanXRQChr03g0081171 Helianthus annuus HOM05D005964 ORTHO05D007242 1.7e-54 217.2 273 45.4
DCAR_008183 Daucus carota HOM05D005964 ORTHO05D007242 1.9e-53 213.8 283 43.8
ClCG10G001030 Citrullus lanatus HOM05D005964 ORTHO05D007242 5.4e-53 212.2 299 40.5
arahy.Tifrunner.gnm1.ann1.MDU2JP Arachis hypogaea HOM05D005964 ORTHO05D007242 2.7e-52 209.9 269 42.4
Sabra01G0101200 Salix brachista HOM05D005964 ORTHO05D007242 2.7e-52 209.9 228 50.0
PSO675G7054 Papaver somniferum HOM05D005964 ORTHO05D007242 4.6e-52 209.1 269 41.6
vmacro14234 Vaccinium macrocarpon HOM05D005964 ORTHO05D007242 4.6e-52 209.1 315 36.8
Os04g0600400 Oryza sativa ssp. japonica HOM05D005964 ORTHO05D007242 7.9e-52 208.4 303 41.3
PSO717G0069 Papaver somniferum HOM05D005964 ORTHO05D007242 3.0e-51 206.5 233 43.3
Zm00001eb071860 Zea mays HOM05D005964 ORTHO05D007242 8.7e-51 204.9 281 43.1
Hund11143 Selenicereus undatus HOM05D005964 ORTHO05D007242 1.1e-50 204.5 388 34.0
MSTRG.13905 Avicennia marina HOM05D005964 ORTHO05D007242 2.5e-50 203.4 172 59.9
AL8G21390 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 2.5e-42 176.8 137 65.0
CDE12G0810 Ceratophyllum demersum HOM05D005964 ORTHO05D007242 1.4e-40 171.0 245 38.8
ATR0829G145 Amborella trichopoda HOM05D005964 ORTHO05D007242 3.1e-40 169.9 180 46.7
PGSC0003DMG400030871 Solanum tuberosum HOM05D005964 ORTHO05D007242 1.0e-38 164.9 176 44.3
Ah.12g055850 Amaranthus hybridus HOM05D005964 ORTHO05D007242 1.1e-37 161.4 179 41.9
SEGI_32375 Sequoiadendron giganteum HOM05D005964 ORTHO05D007242 2.8e-33 146.7 183 40.4
PSO717G0022 Papaver somniferum HOM05D005964 ORTHO05D007242 1.5e-31 141.0 142 51.4
Cpa.g.sc90.42 Carica papaya HOM05D005964 ORTHO05D007242 1.0e-30 138.3 82 73.2
HPP92_021116 Vanilla planifolia HOM05D005964 ORTHO05D007242 7.9e-28 128.6 188 39.9
Mapoly0153s0025 Marchantia polymorpha HOM05D005964 ORTHO05D007242 1.0e-22 111.7 251 32.7
Pp3c6_11480 Physcomitrium patens HOM05D005964 ORTHO05D007242 5.7e-18 95.9 287 28.6
Haze_08067 Corylus avellana HOM05D005964 ORTHO05D007242 1.1e-16 91.7 102 43.1
Haze_05991 Corylus avellana HOM05D005964 ORTHO05D007242 1.6e-12 77.8 173 39.3
Cpa.g.sc90.41 Carica papaya HOM05D005964 ORTHO05D007242 2.3e-11 73.9 44 77.3
Cpa.g.c47778 Carica papaya HOM05D005964 ORTHO05D007242 1.5e-10 71.2 40 70.0
AagrBONN_evm.TU.Sc2ySwM_344.1651 Anthoceros agrestis HOM05D005964 ORTHO05D007242 2.0e-10 70.9 91 38.5
CBR_g24057 Chara braunii HOM05D005964 ORTHO05D007242 2.4e-08 63.9 105 33.3
Oeu042210.1 Olea europaea HOM05D005964 ORTHO05D007242 2.7e-07 60.5 50 44.0


User provided reference genes

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