Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g30546 Brassica carinata HOM05D005046 ORTHO05D006194 1.8e-52 209.1 117 100.0
BNapus_Darmor_BZH_scaffold_118p00040 Brassica napus HOM05D005046 ORTHO05D006194 3.7e-50 201.4 117 98.3
BraA01t04428Z Brassica rapa HOM05D005046 ORTHO05D006194 1.2e-48 196.4 117 95.7
A05p41430 Brassica napus HOM05D005046 ORTHO05D006194 5.9e-48 194.1 117 94.9
C05p60640 Brassica napus HOM05D005046 ORTHO05D006194 5.9e-48 194.1 117 94.9
BolC5t34723H Brassica oleracea HOM05D005046 ORTHO05D006194 5.9e-48 194.1 117 94.9
BraA05t22864Z Brassica rapa HOM05D005046 ORTHO05D006194 5.9e-48 194.1 117 94.9
Sp3g05540 Schrenkiella parvula HOM05D005046 ORTHO05D006194 2.2e-47 192.2 117 93.2
BolC1t05599H Brassica oleracea HOM05D005046 ORTHO05D006194 6.5e-47 190.7 117 94.0
CARHR081150 Cardamine hirsuta HOM05D005046 ORTHO05D006194 8.5e-47 190.3 117 92.3
Thhalv10021793m.g Eutrema salsugineum HOM05D005046 ORTHO05D006194 8.5e-47 190.3 117 91.5
Carub.0003s0607 Capsella rubella HOM05D005046 ORTHO05D006194 3.2e-46 188.3 117 92.3
AT3G06610 Arabidopsis thaliana HOM05D005046 ORTHO05D006194 1.2e-45 186.4 117 90.6
Aa31LG5G17170 Aethionema arabicum HOM05D005046 ORTHO05D006194 1.6e-45 186.0 117 89.7
THA.LOC104818881 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 8.0e-45 183.7 117 88.9
AL3G17660 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 1.4e-44 183.0 117 89.7
THA.LOC104805014 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 8.8e-44 180.3 116 87.1
Potri.010G146100 Populus trichocarpa HOM05D005046 ORTHO05D006194 1.0e-36 156.8 111 80.2
Sabra10G0112600 Salix brachista HOM05D005046 ORTHO05D006194 1.0e-36 156.8 111 79.3
Phvul.006G118400 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 1.4e-36 156.4 111 82.0
VMungo0540G1157 Vigna mungo HOM05D005046 ORTHO05D006194 1.4e-36 156.4 111 82.0
Glyma.15G139900 Glycine max HOM05D005046 ORTHO05D006194 2.3e-36 155.6 111 82.0
MSTRG.24823 Avicennia marina HOM05D005046 ORTHO05D006194 4.0e-36 154.8 111 81.1
Lalb_Chr18g0058661 Lupinus albus HOM05D005046 ORTHO05D006194 5.2e-36 154.5 111 81.1
Lalb_Chr20g0120821 Lupinus albus HOM05D005046 ORTHO05D006194 5.2e-36 154.5 111 80.2
PGR004G2877 Punica granatum HOM05D005046 ORTHO05D006194 6.8e-36 154.1 111 79.3
MD16G1153600 Malus domestica HOM05D005046 ORTHO05D006194 8.9e-36 153.7 111 79.3
Medtr2g034010 Medicago truncatula HOM05D005046 ORTHO05D006194 8.9e-36 153.7 111 80.2
CSS0005662 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 1.5e-35 152.9 111 80.2
CSS0011224 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 1.5e-35 152.9 111 80.2
CSS0039452 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 1.5e-35 152.9 111 80.2
Manes.15G000300 Manihot esculenta HOM05D005046 ORTHO05D006194 1.5e-35 152.9 111 78.4
SGA_v2.0_scaffold104G30073 Striga asiatica HOM05D005046 ORTHO05D006194 1.5e-35 152.9 111 79.3
Psat1g160840 Pisum sativum HOM05D005046 ORTHO05D006194 2.0e-35 152.5 111 80.2
Lj6g0015111 Lotus japonicus HOM05D005046 ORTHO05D006194 2.6e-35 152.1 111 79.3
HanXRQChr11g0353491 Helianthus annuus HOM05D005046 ORTHO05D006194 3.4e-35 151.8 111 80.2
TPR.G13743 Trifolium pratense HOM05D005046 ORTHO05D006194 4.4e-35 151.4 111 78.4
MSTRG.10153 Avicennia marina HOM05D005046 ORTHO05D006194 5.7e-35 151.0 111 79.3
Glyma.09G035300 Glycine max HOM05D005046 ORTHO05D006194 5.7e-35 151.0 111 80.2
Cfa015310 Carpinus fangiana HOM05D005046 ORTHO05D006194 7.5e-35 150.6 111 77.5
Eucgr.H04047 Eucalyptus grandis HOM05D005046 ORTHO05D006194 7.5e-35 150.6 111 77.5
Prupe.1G116800 Prunus persica HOM05D005046 ORTHO05D006194 7.5e-35 150.6 111 79.3
Solyc12g099240.2 Solanum lycopersicum HOM05D005046 ORTHO05D006194 1.3e-34 149.8 112 76.8
Sopen12g033920 Solanum pennellii HOM05D005046 ORTHO05D006194 1.3e-34 149.8 112 76.8
PGSC0003DMG400004620 Solanum tuberosum HOM05D005046 ORTHO05D006194 1.3e-34 149.8 112 77.7
MD13G1153200 Malus domestica HOM05D005046 ORTHO05D006194 1.7e-34 149.4 111 79.3
Migut.G00065 Erythranthe guttata HOM05D005046 ORTHO05D006194 3.7e-34 148.3 111 76.6
Actinidia14256 Actinidia chinensis HOM05D005046 ORTHO05D006194 4.9e-34 147.9 111 77.5
arahy.Tifrunner.gnm1.ann1.4F0N5D Arachis hypogaea HOM05D005046 ORTHO05D006194 4.9e-34 147.9 111 76.6
arahy.Tifrunner.gnm1.ann1.KUZ2VC Arachis hypogaea HOM05D005046 ORTHO05D006194 4.9e-34 147.9 111 76.6
BcaC09g47907 Brassica carinata HOM05D005046 ORTHO05D006194 4.9e-34 147.9 117 76.1
Ca_00977_v3 Cicer arietinum L. HOM05D005046 ORTHO05D006194 4.9e-34 147.9 111 76.6
Gorai.005G067500 Gossypium raimondii HOM05D005046 ORTHO05D006194 4.9e-34 147.9 111 76.6
Nn3g21734 Nelumbo nucifera HOM05D005046 ORTHO05D006194 4.9e-34 147.9 106 80.2
Ciclev10006264m.g Citrus clementina HOM05D005046 ORTHO05D006194 6.3e-34 147.5 111 75.7
Glyma.17G033800 Glycine max HOM05D005046 ORTHO05D006194 6.3e-34 147.5 111 78.4
Gohir.A02G054900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 6.3e-34 147.5 111 76.6
Lsat_1_v5_gn_1_41381 Lactuca sativa HOM05D005046 ORTHO05D006194 6.3e-34 147.5 111 78.4
Phvul.003G114500 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 6.3e-34 147.5 111 78.4
VMungo1215G0235 Vigna mungo HOM05D005046 ORTHO05D006194 6.3e-34 147.5 111 78.4
Dinv44282 Davidia involucrata HOM05D005046 ORTHO05D006194 8.3e-34 147.1 111 78.4
COL.COLO4_34610 Corchorus olitorius HOM05D005046 ORTHO05D006194 1.1e-33 146.7 111 77.5
Oeu001169.1 Olea europaea HOM05D005046 ORTHO05D006194 1.1e-33 146.7 106 80.2
Glyma.07G239500 Glycine max HOM05D005046 ORTHO05D006194 1.4e-33 146.4 111 78.4
Gohir.A01G034600 Gossypium hirsutum HOM05D005046 ORTHO05D006194 1.4e-33 146.4 111 76.6
SalBow5G2652 Salvia bowleyana HOM05D005046 ORTHO05D006194 1.4e-33 146.4 111 74.8
Dinv15163 Davidia involucrata HOM05D005046 ORTHO05D006194 1.8e-33 146.0 111 77.5
Duzib212G1042 Durio zibethinus HOM05D005046 ORTHO05D006194 1.8e-33 146.0 112 75.9
MELO3C021266.2 Cucumis melo HOM05D005046 ORTHO05D006194 2.4e-33 145.6 111 77.5
CsaV3_6G028590 Cucumis sativus L. HOM05D005046 ORTHO05D006194 2.4e-33 145.6 111 77.5
Peaxi162Scf00228g00326 Petunia axillaris HOM05D005046 ORTHO05D006194 2.4e-33 145.6 112 75.0
vmacro08042 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 2.4e-33 145.6 111 73.9
Gohir.D01G023544 Gossypium hirsutum HOM05D005046 ORTHO05D006194 3.1e-33 145.2 111 76.6
Gorai.002G030300 Gossypium raimondii HOM05D005046 ORTHO05D006194 3.1e-33 145.2 111 76.6
TWI73G0015 Tripterygium wilfordii HOM05D005046 ORTHO05D006194 3.1e-33 145.2 111 77.5
CAN.G484.64 Capsicum annuum HOM05D005046 ORTHO05D006194 4.1e-33 144.8 112 75.9
CiPaw.02G074700 Carya illinoinensis HOM05D005046 ORTHO05D006194 4.1e-33 144.8 111 74.8
Os03g0832300 Oryza sativa ssp. japonica HOM05D005046 ORTHO05D006194 4.1e-33 144.8 102 79.4
Rhsim04G0239300 Rhododendron simsii HOM05D005046 ORTHO05D006194 4.1e-33 144.8 111 73.9
Duzib052G0826 Durio zibethinus HOM05D005046 ORTHO05D006194 9.2e-33 143.7 111 76.6
FvH4_4g19820 Fragaria vesca HOM05D005046 ORTHO05D006194 9.2e-33 143.7 111 76.6
FAN07G0875 Fragaria x ananassa HOM05D005046 ORTHO05D006194 9.2e-33 143.7 111 76.6
FAN12G2964 Fragaria x ananassa HOM05D005046 ORTHO05D006194 9.2e-33 143.7 111 76.6
Rhsim02G0003600 Rhododendron simsii HOM05D005046 ORTHO05D006194 9.2e-33 143.7 109 77.1
Sed0009015 Sechium edule HOM05D005046 ORTHO05D006194 9.2e-33 143.7 111 73.9
GSVIVG01034987001 Vitis vinifera HOM05D005046 ORTHO05D006194 9.2e-33 143.7 111 77.5
Nitab4.5_0000403g0120 Nicotiana tabacum HOM05D005046 ORTHO05D006194 1.2e-32 143.3 112 74.1
QL05p065557 Quercus lobata HOM05D005046 ORTHO05D006194 1.2e-32 143.3 109 76.1
Sed0022816 Sechium edule HOM05D005046 ORTHO05D006194 1.2e-32 143.3 111 75.7
Aqoxy5G02541 Aquilegia oxysepala HOM05D005046 ORTHO05D006194 1.6e-32 142.9 111 75.7
CiPaw.01G138200 Carya illinoinensis HOM05D005046 ORTHO05D006194 1.6e-32 142.9 111 73.9
Thecc.04G301400 Theobroma cacao HOM05D005046 ORTHO05D006194 1.6e-32 142.9 111 74.8
HPP92_016092 Vanilla planifolia HOM05D005046 ORTHO05D006194 1.6e-32 142.9 111 75.7
Lj6A691T78 Lonicera japonica HOM05D005046 ORTHO05D006194 2.0e-32 142.5 111 75.7
ClCG06G004560 Citrullus lanatus HOM05D005046 ORTHO05D006194 2.7e-32 142.1 126 69.0
Haze_01302 Corylus avellana HOM05D005046 ORTHO05D006194 2.7e-32 142.1 111 75.7
RcHm_v2.0_Chr4g0425361 Rosa chinensis HOM05D005046 ORTHO05D006194 2.7e-32 142.1 111 75.7
Actinidia18456 Actinidia chinensis HOM05D005046 ORTHO05D006194 3.5e-32 141.7 111 77.5
Actinidia40381 Actinidia chinensis HOM05D005046 ORTHO05D006194 3.5e-32 141.7 111 77.5
unitig_749.g13361 Utricularia gibba HOM05D005046 ORTHO05D006194 3.5e-32 141.7 106 76.4
TAR636G1364 Trochodendron aralioides HOM05D005046 ORTHO05D006194 4.5e-32 141.4 111 76.6
CANSAT78G2375 Cannabis sativa HOM05D005046 ORTHO05D006194 5.9e-32 141.0 112 73.2
Zm00001eb211320 Zea mays HOM05D005046 ORTHO05D006194 1.0e-31 140.2 99 79.8
PSO210G4010 Papaver somniferum HOM05D005046 ORTHO05D006194 3.8e-31 138.3 111 72.1
PSO761G0203 Papaver somniferum HOM05D005046 ORTHO05D006194 3.8e-31 138.3 111 72.1
MBI18_g37558_MAGBIO Magnolia biondii HOM05D005046 ORTHO05D006194 5.0e-31 137.9 133 66.2
CDE02G0992 Ceratophyllum demersum HOM05D005046 ORTHO05D006194 5.6e-30 134.4 111 72.1
ATR0693G376 Amborella trichopoda HOM05D005046 ORTHO05D006194 7.3e-30 134.0 98 79.6
Potri.008G105000 Populus trichocarpa HOM05D005046 ORTHO05D006194 9.5e-30 133.7 111 71.2
Sc25g0003240 Simmondsia chinensis HOM05D005046 ORTHO05D006194 1.2e-29 133.3 111 73.0
Hund11979 Selenicereus undatus HOM05D005046 ORTHO05D006194 1.6e-29 132.9 111 71.2
Pp3c15_12430 Physcomitrium patens HOM05D005046 ORTHO05D006194 3.6e-29 131.7 98 76.5
Actinidia13356 Actinidia chinensis HOM05D005046 ORTHO05D006194 1.0e-28 130.2 101 76.2
AagrBONN_evm.TU.Sc2ySwM_368.969 Anthoceros agrestis HOM05D005046 ORTHO05D006194 1.8e-28 129.4 107 71.0
CAN.G158.24 Capsicum annuum HOM05D005046 ORTHO05D006194 1.8e-28 129.4 112 68.8
Sabra08G0079200 Salix brachista HOM05D005046 ORTHO05D006194 1.8e-28 129.4 111 73.0
AUR62016211 Chenopodium quinoa HOM05D005046 ORTHO05D006194 1.5e-27 126.3 112 69.6
EL10Ac3g05511 Beta vulgaris HOM05D005046 ORTHO05D006194 2.6e-27 125.6 111 68.5
AUR62039277 Chenopodium quinoa HOM05D005046 ORTHO05D006194 7.5e-27 124.0 111 66.7
PSO063G6303 Papaver somniferum HOM05D005046 ORTHO05D006194 9.8e-27 123.6 111 63.1
Nitab4.5_0000496g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 2.2e-26 122.5 112 66.1
Ah.13g071840 Amaranthus hybridus HOM05D005046 ORTHO05D006194 2.9e-26 122.1 111 65.8
SMO304G0028 Selaginella moellendorffii HOM05D005046 ORTHO05D006194 3.7e-26 121.7 99 67.7
PSO017G4602 Papaver somniferum HOM05D005046 ORTHO05D006194 1.1e-25 120.2 111 64.0
ECA240G2346 Erigeron canadensis HOM05D005046 ORTHO05D006194 3.2e-25 118.6 112 65.2
Nitab4.5_0002150g0070 Nicotiana tabacum HOM05D005046 ORTHO05D006194 3.2e-25 118.6 112 63.4
vmacro15180 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 7.0e-25 117.5 180 47.8
Mapoly0010s0169 Marchantia polymorpha HOM05D005046 ORTHO05D006194 2.7e-24 115.5 99 66.7
AagrBONN_evm.TU.Sc2ySwM_368.976 Anthoceros agrestis HOM05D005046 ORTHO05D006194 3.5e-24 115.2 95 71.6
Nitab4.5_0002294g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 3.9e-23 111.7 112 61.6
Cc03_g00760 Coffea canephora HOM05D005046 ORTHO05D006194 5.0e-23 111.3 85 78.8
CBR_g51449 Chara braunii HOM05D005046 ORTHO05D006194 6.6e-23 110.9 97 66.0
Manes.03G205301 Manihot esculenta HOM05D005046 ORTHO05D006194 1.2e-19 100.1 108 58.3
AL3G18870 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 5.8e-19 97.8 62 87.1
Gohir.D02G059900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 1.2e-16 90.1 73 75.3
DCAR_026983 Daucus carota HOM05D005046 ORTHO05D006194 3.3e-14 82.0 59 78.0
TAR365G1002 Trochodendron aralioides HOM05D005046 ORTHO05D006194 4.3e-14 81.6 66 75.8
Lj5g0009192 Lotus japonicus HOM05D005046 ORTHO05D006194 2.1e-13 79.3 89 56.2
SEGI_33495 Sequoiadendron giganteum HOM05D005046 ORTHO05D006194 3.1e-12 75.5 59 71.2
Atru.chr4.2994 Acer truncatum HOM05D005046 ORTHO05D006194 8.9e-12 73.9 47 80.9
RcHm_v2.0_Chr5g0023271 Rosa chinensis HOM05D005046 ORTHO05D006194 8.9e-12 73.9 72 63.9
Lj1g0019312 Lotus japonicus HOM05D005046 ORTHO05D006194 1.2e-11 73.6 68 67.6
Eucgr.J02724 Eucalyptus grandis HOM05D005046 ORTHO05D006194 5.8e-11 71.2 47 76.6
Atru.chr4.2993 Acer truncatum HOM05D005046 ORTHO05D006194 6.4e-10 67.8 53 71.7


User provided reference genes

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