Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 2.8e-61 238.4 122 100.0
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 7.8e-59 230.3 122 98.4
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 2.5e-57 225.3 122 96.7
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 1.0e-55 219.9 122 94.3
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 1.0e-55 219.9 122 94.3
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 7.8e-51 203.8 125 88.0
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 1.1e-47 193.4 125 79.2
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 4.0e-47 191.4 126 80.2
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 5.2e-47 191.0 123 82.1
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 2.9e-45 185.3 121 81.0
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 1.2e-43 179.9 125 76.0
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 2.1e-43 179.1 122 80.3
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 2.1e-43 179.1 122 79.5
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 4.6e-43 177.9 122 77.0
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 4.6e-43 177.9 122 77.0
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 4.6e-43 177.9 122 77.0
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 4.6e-43 177.9 122 77.0
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 2.3e-42 175.6 122 78.7
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.3e-29 133.3 122 59.0
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 6.4e-29 131.0 121 57.9
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 6.4e-29 131.0 131 59.5
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 1.1e-28 130.2 123 56.1
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 4.2e-28 128.3 124 58.1
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 5.1e-26 121.3 129 53.5
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 1.1e-25 120.2 129 51.9
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 1.1e-25 120.2 129 51.9
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 1.1e-25 120.2 129 51.9
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 4.3e-25 118.2 129 51.2
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 1.3e-24 116.7 120 52.5
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 4.8e-24 114.8 120 50.0
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 1.2e-22 110.2 101 55.4
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 2.2e-21 105.9 86 59.3
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 2.2e-21 105.9 129 47.3
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 2.2e-21 105.9 93 54.8
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 2.2e-21 105.9 125 45.6
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 2.9e-21 105.5 130 47.7
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 2.9e-21 105.5 130 47.7
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 3.8e-21 105.1 125 45.6
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 4.9e-21 104.8 105 52.4
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 6.4e-21 104.4 126 46.0
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.1e-20 103.6 131 48.1
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 1.1e-20 103.6 119 49.6
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 1.9e-20 102.8 125 44.8
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 2.4e-20 102.4 108 49.1
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 2.4e-20 102.4 119 47.9
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 5.4e-20 101.3 128 46.9
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 7.1e-20 100.9 124 50.0
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 9.3e-20 100.5 123 48.0
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 2.1e-19 99.4 121 47.1
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 4.6e-19 98.2 94 53.2
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 7.9e-19 97.4 130 45.4
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 7.9e-19 97.4 125 45.6
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 1.0e-18 97.1 129 48.1
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 1.3e-18 96.7 133 45.1
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.7e-18 96.3 102 51.0
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.7e-18 96.3 87 52.9
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 1.7e-18 96.3 87 56.3
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 1.7e-18 96.3 103 50.5
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 3.9e-18 95.1 132 47.0
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 5.1e-18 94.7 125 44.8
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 5.1e-18 94.7 110 48.2
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 1.1e-17 93.6 87 54.0
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 1.1e-17 93.6 137 43.8
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 1.5e-17 93.2 129 45.7
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 3.3e-17 92.0 109 45.0
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 4.3e-17 91.7 108 40.7
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 7.3e-17 90.9 122 47.5
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 7.3e-17 90.9 127 45.7
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 7.3e-17 90.9 126 42.1
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 7.3e-17 90.9 130 45.4
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 9.6e-17 90.5 124 45.2
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 9.6e-17 90.5 130 43.1
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 9.6e-17 90.5 127 43.3
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 1.3e-16 90.1 128 43.8
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.3e-16 90.1 129 42.6
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 1.3e-16 90.1 108 52.8
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 1.3e-16 90.1 89 47.2
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 2.1e-16 89.4 122 45.9
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 2.1e-16 89.4 120 47.5
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.1e-16 89.4 132 45.5
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 2.8e-16 89.0 128 42.2
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 2.8e-16 89.0 128 42.2
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 4.8e-16 88.2 115 48.7
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 4.8e-16 88.2 115 48.7
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 4.8e-16 88.2 115 48.7
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 4.8e-16 88.2 115 48.7
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 6.2e-16 87.8 127 47.2
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 8.1e-16 87.4 120 45.0
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 1.1e-15 87.0 99 48.5
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 1.4e-15 86.7 86 48.8
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 1.8e-15 86.3 94 52.1
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 2.4e-15 85.9 81 53.1
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 3.1e-15 85.5 88 50.0
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 3.1e-15 85.5 84 52.4
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 4.0e-15 85.1 116 44.8
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 4.0e-15 85.1 93 44.1
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 4.0e-15 85.1 124 42.7
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 4.0e-15 85.1 92 46.7
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 5.3e-15 84.7 116 44.0
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 6.9e-15 84.3 89 52.8
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 9.0e-15 84.0 94 47.9
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 9.0e-15 84.0 113 45.1
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 9.0e-15 84.0 82 53.7
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 9.0e-15 84.0 131 46.6
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.2e-14 83.6 97 46.4
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 1.2e-14 83.6 125 45.6
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.5e-14 83.2 123 49.6
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.5e-14 83.2 107 46.7
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 1.5e-14 83.2 82 54.9
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 2.0e-14 82.8 94 50.0
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 2.6e-14 82.4 113 43.4
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 2.6e-14 82.4 88 50.0
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 2.6e-14 82.4 88 50.0
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 2.6e-14 82.4 101 51.5
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 2.6e-14 82.4 135 41.5
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 2.6e-14 82.4 89 51.7
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 3.4e-14 82.0 130 43.8
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 3.4e-14 82.0 107 43.0
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 3.4e-14 82.0 125 45.6
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 5.8e-14 81.3 123 41.5
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 5.8e-14 81.3 86 53.5
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 7.6e-14 80.9 124 45.2
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 7.6e-14 80.9 127 42.5
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 9.9e-14 80.5 121 43.0
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 9.9e-14 80.5 99 46.5
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 2.2e-13 79.3 107 43.0
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 2.2e-13 79.3 83 51.8
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 2.2e-13 79.3 90 48.9
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 2.9e-13 79.0 126 43.7
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 3.8e-13 78.6 121 41.3
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 3.8e-13 78.6 87 49.4
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 3.8e-13 78.6 125 40.0
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 4.9e-13 78.2 105 45.7
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 6.4e-13 77.8 82 47.6
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 6.4e-13 77.8 131 42.7
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 6.4e-13 77.8 85 49.4
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 8.4e-13 77.4 110 44.5
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 8.4e-13 77.4 85 49.4
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 1.4e-12 76.6 111 43.2
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 1.9e-12 76.3 77 48.1
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 3.2e-12 75.5 89 46.1
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 3.2e-12 75.5 124 42.7
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 4.2e-12 75.1 84 48.8
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 7.1e-12 74.3 107 37.4
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 9.3e-12 73.9 91 45.1
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 1.2e-11 73.6 90 44.4
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 1.2e-11 73.6 84 51.2
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 1.6e-11 73.2 112 38.4
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 1.6e-11 73.2 57 56.1
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 1.6e-11 73.2 79 48.1
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 2.1e-11 72.8 90 44.4
Sed0022343 Sechium edule HOM05D003592 ORTHO05D004208 3.5e-11 72.0 70 50.0
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 4.6e-11 71.6 96 45.8
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 7.9e-11 70.9 88 43.2
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 1.3e-10 70.1 91 44.0
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.8e-10 69.7 92 39.1
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 1.8e-10 69.7 105 39.0
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 1.8e-10 69.7 99 42.4
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 2.3e-10 69.3 99 36.4
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 2.3e-10 69.3 99 36.4
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 3.0e-10 68.9 100 37.0
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.9e-10 68.6 118 39.8
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 5.1e-10 68.2 135 40.0
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 5.1e-10 68.2 84 44.0
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 6.7e-10 67.8 81 45.7
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 8.7e-10 67.4 103 40.8
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.1e-09 67.0 123 44.7
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 1.5e-09 66.6 87 42.5
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 1.9e-09 66.2 118 37.3
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 3.3e-09 65.5 44 63.6
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 3.3e-09 65.5 126 42.1
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 4.3e-09 65.1 103 37.9
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 5.6e-09 64.7 123 39.8
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 7.4e-09 64.3 109 40.4
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 9.6e-09 63.9 90 42.2
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 9.6e-09 63.9 103 38.8
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.8e-08 62.4 123 43.1
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 2.8e-08 62.4 71 43.7
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 2.8e-08 62.4 105 37.1
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 3.7e-08 62.0 97 38.1
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 4.8e-08 61.6 99 38.4
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 2.4e-07 59.3 116 36.2
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 2.4e-07 59.3 115 34.8
Ah.13g071140 Amaranthus hybridus HOM05D003592 ORTHO05D004208 3.1e-07 58.9 86 43.0
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.5e-06 56.6 74 35.1
HanXRQChr05g0137871 Helianthus annuus HOM05D003592 ORTHO05D029303 4.5e-06 55.1 95 33.7


User provided reference genes

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