Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g30489 Brassica carinata HOM05D004723 ORTHO05D006176 2.6e-276 955.3 694 100.0
BraA05t23177Z Brassica rapa HOM05D004723 ORTHO05D006176 4.7e-217 758.4 711 79.6
A05p44800 Brassica napus HOM05D004723 ORTHO05D006176 1.8e-216 756.5 715 79.0
C09p75390 Brassica napus HOM05D004723 ORTHO05D006176 1.3e-214 750.4 703 82.5
BcaC05g30387 Brassica carinata HOM05D004723 ORTHO05D006176 7.7e-212 741.1 702 80.1
BolC5t35121H Brassica oleracea HOM05D004723 ORTHO05D006176 2.5e-210 736.1 712 81.5
Sp3g00960 Schrenkiella parvula HOM05D004723 ORTHO05D006176 1.0e-184 651.0 719 68.6
Thhalv10020182m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 1.2e-164 584.3 725 63.7
Aa31LG5G12460 Aethionema arabicum HOM05D004723 ORTHO05D006176 3.2e-149 533.1 745 65.4
AT3G01160 Arabidopsis thaliana HOM05D004723 ORTHO05D006176 6.6e-147 525.4 733 55.3
AL3G11100 Arabidopsis lyrata HOM05D004723 ORTHO05D006176 7.3e-146 521.9 736 55.2
BcaC01g04506 Brassica carinata HOM05D004723 ORTHO05D006176 7.1e-141 505.4 722 60.2
Carub.0003s0100 Capsella rubella HOM05D004723 ORTHO05D006176 8.1e-137 491.9 739 63.2
CARHR075890 Cardamine hirsuta HOM05D004723 ORTHO05D006176 2.9e-134 483.4 730 58.8
Sed0008382 Sechium edule HOM05D004723 ORTHO05D006176 3.4e-119 433.3 699 48.8
CiPaw.07G062200 Carya illinoinensis HOM05D004723 ORTHO05D006176 6.7e-115 419.1 700 48.9
Ciclev10025027m.g Citrus clementina HOM05D004723 ORTHO05D006176 8.8e-115 418.7 700 55.6
Atru.chr3.886 Acer truncatum HOM05D004723 ORTHO05D006176 7.4e-114 415.6 710 49.2
Atru.chr3.897 Acer truncatum HOM05D004723 ORTHO05D006176 7.4e-114 415.6 710 49.2
Gorai.012G044400 Gossypium raimondii HOM05D004723 ORTHO05D006176 4.8e-113 412.9 728 47.4
Cfa007019 Carpinus fangiana HOM05D004723 ORTHO05D006176 8.2e-113 412.1 716 47.8
Potri.005G108800 Populus trichocarpa HOM05D004723 ORTHO05D006176 1.4e-112 411.4 742 53.1
Eucgr.I02314 Eucalyptus grandis HOM05D004723 ORTHO05D006176 4.1e-112 409.8 687 44.0
Haze_03712 Corylus avellana HOM05D004723 ORTHO05D006176 6.9e-112 409.1 716 47.9
Nn5g30820 Nelumbo nucifera HOM05D004723 ORTHO05D006176 6.9e-112 409.1 704 45.7
Manes.10G142700 Manihot esculenta HOM05D004723 ORTHO05D006176 2.6e-111 407.1 704 45.6
TWI09G0244 Tripterygium wilfordii HOM05D004723 ORTHO05D006176 4.5e-111 406.4 734 49.0
QL06p051414 Quercus lobata HOM05D004723 ORTHO05D006176 5.9e-111 406.0 708 53.5
Sabra05G0089200 Salix brachista HOM05D004723 ORTHO05D006176 1.3e-110 404.8 714 53.2
ClCG05G000690 Citrullus lanatus HOM05D004723 ORTHO05D006176 2.9e-110 403.7 701 41.4
FAN26G3228 Fragaria x ananassa HOM05D004723 ORTHO05D006176 2.9e-110 403.7 698 54.0
Gohir.A05G376600 Gossypium hirsutum HOM05D004723 ORTHO05D006176 3.8e-110 403.3 724 46.3
Prupe.7G173800 Prunus persica HOM05D004723 ORTHO05D006176 3.8e-110 403.3 717 48.8
FvH4_1g11200 Fragaria vesca HOM05D004723 ORTHO05D006176 5.0e-110 402.9 697 59.5
FAN19G1371 Fragaria x ananassa HOM05D004723 ORTHO05D006176 2.5e-109 400.6 696 58.6
RcHm_v2.0_Chr2g0098611 Rosa chinensis HOM05D004723 ORTHO05D006176 1.2e-108 398.3 726 55.0
Cc07_g11220 Coffea canephora HOM05D004723 ORTHO05D006176 1.6e-108 397.9 685 44.1
Nitab4.5_0001789g0050 Nicotiana tabacum HOM05D004723 ORTHO05D006176 1.6e-108 397.9 707 55.7
MELO3C006009.2 Cucumis melo HOM05D004723 ORTHO05D006176 6.1e-108 396.0 685 44.1
GSVIVG01007226001 Vitis vinifera HOM05D004723 ORTHO05D006176 6.1e-108 396.0 706 42.8
MD02G1124600 Malus domestica HOM05D004723 ORTHO05D006176 1.0e-107 395.2 660 55.6
TAR628G1348 Trochodendron aralioides HOM05D004723 ORTHO05D006176 1.0e-107 395.2 631 51.7
arahy.Tifrunner.gnm1.ann1.DG5MW5 Arachis hypogaea HOM05D004723 ORTHO05D006176 2.3e-107 394.0 702 48.4
MSTRG.10980 Avicennia marina HOM05D004723 ORTHO05D006176 5.1e-107 392.9 685 42.8
PGR119G2074 Punica granatum HOM05D004723 ORTHO05D006176 5.1e-107 392.9 758 50.5
Hund14070 Selenicereus undatus HOM05D004723 ORTHO05D006176 6.7e-107 392.5 675 52.4
Nitab4.5_0006899g0060 Nicotiana tabacum HOM05D004723 ORTHO05D006176 8.8e-107 392.1 708 51.8
CANSAT25G3056 Cannabis sativa HOM05D004723 ORTHO05D006176 2.0e-106 391.0 717 50.5
PGSC0003DMG400003588 Solanum tuberosum HOM05D004723 ORTHO05D006176 2.0e-106 391.0 709 53.2
Actinidia35669 Actinidia chinensis HOM05D004723 ORTHO05D006176 3.3e-106 390.2 685 47.4
Solyc02g083470.3 Solanum lycopersicum HOM05D004723 ORTHO05D006176 4.4e-106 389.8 732 52.9
Thecc.08G139800 Theobroma cacao HOM05D004723 ORTHO05D006176 5.7e-106 389.4 691 49.3
Sopen02g028260 Solanum pennellii HOM05D004723 ORTHO05D006176 9.7e-106 388.7 728 55.1
CsaV3_3G007910 Cucumis sativus L. HOM05D004723 ORTHO05D006176 1.3e-105 388.3 688 48.5
Sc07g0001170 Simmondsia chinensis HOM05D004723 ORTHO05D006176 1.3e-105 388.3 715 48.8
Glyma.16G122800 Glycine max HOM05D004723 ORTHO05D006176 1.7e-105 387.9 729 47.9
Lj4A224T28 Lonicera japonica HOM05D004723 ORTHO05D006176 2.2e-105 387.5 742 47.0
arahy.Tifrunner.gnm1.ann1.7VD04T Arachis hypogaea HOM05D004723 ORTHO05D006176 2.8e-105 387.1 698 49.7
Duzib147G1420 Durio zibethinus HOM05D004723 ORTHO05D006176 1.4e-104 384.8 693 45.7
VMungo0251G3240 Vigna mungo HOM05D004723 ORTHO05D006176 1.8e-104 384.4 712 46.1
CSS0036730 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 2.4e-104 384.0 681 45.2
CSS0012813 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 3.1e-104 383.6 711 47.4
Peaxi162Scf00198g00136 Petunia axillaris HOM05D004723 ORTHO05D006176 4.1e-104 383.3 731 53.4
Phvul.003G266400 Phaseolus vulgaris HOM05D004723 ORTHO05D006176 9.1e-104 382.1 723 50.5
ECA232G2222 Erigeron canadensis HOM05D004723 ORTHO05D006176 1.2e-103 381.7 627 45.5
Psat7g090000 Pisum sativum HOM05D004723 ORTHO05D006176 7.7e-103 379.0 721 47.7
HanXRQChr09g0257321 Helianthus annuus HOM05D004723 ORTHO05D006176 4.2e-101 373.2 727 42.8
Lsat_1_v5_gn_4_144101 Lactuca sativa HOM05D004723 ORTHO05D006176 1.6e-100 371.3 696 50.1
PSO541G1155 Papaver somniferum HOM05D004723 ORTHO05D006176 4.7e-100 369.8 723 47.7
Cpa.g.sc6.304 Carica papaya HOM05D004723 ORTHO05D006176 1.0e-99 368.6 731 48.3
Ca_18264_v3 Cicer arietinum L. HOM05D004723 ORTHO05D006176 1.4e-99 368.2 699 49.2
EL10Ac6g15170 Beta vulgaris HOM05D004723 ORTHO05D006176 1.8e-99 367.9 732 46.2
CAN.G890.41 Capsicum annuum HOM05D004723 ORTHO05D006176 3.0e-99 367.1 520 47.1
Lalb_Chr16g0391491 Lupinus albus HOM05D004723 ORTHO05D006176 2.6e-98 364.0 707 51.3
FAN23G0842 Fragaria x ananassa HOM05D004723 ORTHO05D006176 5.7e-98 362.8 504 56.0
Glyma.02G045200 Glycine max HOM05D004723 ORTHO05D006176 1.7e-97 361.3 725 44.7
Lj4g0028127 Lotus japonicus HOM05D004723 ORTHO05D006176 2.8e-97 360.5 715 49.4
PSO675G8954 Papaver somniferum HOM05D004723 ORTHO05D006176 3.7e-97 360.1 721 45.1
Rhsim08G0030800 Rhododendron simsii HOM05D004723 ORTHO05D006176 1.1e-93 348.6 704 43.3
AUR62003701 Chenopodium quinoa HOM05D004723 ORTHO05D006176 2.5e-93 347.4 751 45.3
Medtr4g096820 Medicago truncatula HOM05D004723 ORTHO05D006176 3.2e-93 347.1 722 45.2
DCAR_024713 Daucus carota HOM05D004723 ORTHO05D006176 4.2e-93 346.7 726 44.1
Aqoxy6G02087 Aquilegia oxysepala HOM05D004723 ORTHO05D006176 2.1e-92 344.4 778 45.8
ATR0665G361 Amborella trichopoda HOM05D004723 ORTHO05D006176 3.6e-92 343.6 505 48.1
Migut.F01827 Erythranthe guttata HOM05D004723 ORTHO05D006176 1.0e-91 342.0 522 44.4
Gohir.1Z049326 Gossypium hirsutum HOM05D004723 ORTHO05D006176 5.2e-91 339.7 723 44.0
AUR62018009 Chenopodium quinoa HOM05D004723 ORTHO05D006176 8.8e-91 339.0 539 44.9
TPR.G4863 Trifolium pratense HOM05D004723 ORTHO05D006176 2.6e-90 337.4 532 52.6
SEGI_08029 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 7.5e-90 335.9 525 44.8
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 7.5e-90 335.9 719 42.1
SGA_v2.0_scaffold111G31425 Striga asiatica HOM05D004723 ORTHO05D006176 6.5e-86 322.8 584 43.7
Dinv40130 Davidia involucrata HOM05D004723 ORTHO05D006176 5.5e-85 319.7 302 56.0
Ah.01g003790 Amaranthus hybridus HOM05D004723 ORTHO05D006176 7.2e-85 319.3 542 46.9
vmacro18436 Vaccinium macrocarpon HOM05D004723 ORTHO05D006176 2.3e-83 314.3 731 42.8
Medtr4g073330 Medicago truncatula HOM05D004723 ORTHO05D006176 5.0e-78 296.6 704 40.2
Oeu005338.2 Olea europaea HOM05D004723 ORTHO05D006176 1.5e-77 295.0 747 44.3
CDE05G0976 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 1.9e-77 294.7 404 54.5
AagrBONN_evm.TU.Sc2ySwM_117.2822 Anthoceros agrestis HOM05D004723 ORTHO05D006176 2.1e-76 291.2 741 37.1
SMO239G0207 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 6.3e-73 279.6 438 40.2
SMO232G0062 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 1.1e-72 278.9 641 35.3
SHI00027 Sapria himalayana HOM05D004723 ORTHO05D006176 2.4e-72 277.7 626 36.7
AagrBONN_evm.TU.Sc2ySwM_368.2747 Anthoceros agrestis HOM05D004723 ORTHO05D006176 5.9e-71 273.1 739 38.8
Zm00001eb323180 Zea mays HOM05D004723 ORTHO05D006176 1.7e-70 271.6 658 42.2
Os07g0531700 Oryza sativa ssp. japonica HOM05D004723 ORTHO05D006176 1.2e-68 265.4 522 39.5
Gohir.1Z049627 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.4e-67 261.9 441 48.5
C03p39900 Brassica napus HOM05D004723 ORTHO05D006176 2.6e-66 257.7 199 67.8
Pp3c17_7210 Physcomitrium patens HOM05D004723 ORTHO05D006176 5.0e-62 243.4 556 36.5
MD15G1238700 Malus domestica HOM05D004723 ORTHO05D006176 1.5e-58 231.9 352 57.7
HPP92_019125 Vanilla planifolia HOM05D004723 ORTHO05D006176 1.1e-51 209.1 198 52.0
Mapoly0061s0018 Marchantia polymorpha HOM05D004723 ORTHO05D006176 1.8e-51 208.4 569 29.9
TAR628G1016 Trochodendron aralioides HOM05D004723 ORTHO05D005421 6.8e-51 206.5 215 50.7
Rhsim08G0030900 Rhododendron simsii HOM05D004723 ORTHO05D006176 4.1e-48 197.2 458 35.8
Thecc.01G155000 Theobroma cacao HOM05D004723 ORTHO05D006176 7.8e-47 193.0 357 46.2
CBR_g41392 Chara braunii HOM05D004723 ORTHO05D006176 4.3e-45 187.2 223 48.0
TPR.G3121 Trifolium pratense HOM05D004723 ORTHO05D006176 2.7e-39 167.9 206 45.1
MCO13G085 Micromonas commoda HOM05D004723 ORTHO05D006176 6.6e-38 163.3 242 37.6
PRCOL_00004947 Prasinoderma coloniale HOM05D004723 ORTHO05D006176 6.6e-38 163.3 243 39.5
Gohir.D04G039432 Gossypium hirsutum HOM05D004723 ORTHO05D006176 2.1e-36 158.3 288 43.1
Cre10.g452500 Chlamydomonas reinhardtii HOM05D004723 ORTHO05D006176 5.3e-35 153.7 241 41.9
BolC3t16253H Brassica oleracea HOM05D004723 ORTHO05D006176 4.2e-32 144.1 114 64.9
COL.COLO4_34179 Corchorus olitorius HOM05D004723 ORTHO05D006176 5.3e-27 127.1 501 27.5
BraA03t12436Z Brassica rapa HOM05D004723 ORTHO05D019910 1.6e-23 115.5 126 61.9
MD15G1238600 Malus domestica HOM05D004723 ORTHO05D006176 1.6e-23 115.5 244 43.4
BcaC01g04505 Brassica carinata HOM05D004723 ORTHO05D019910 7.9e-23 113.2 125 59.2
THA.LOC104821168 Tarenaya hassleriana HOM05D004723 ORTHO05D006176 1.8e-22 112.1 138 50.7
Medtr3g107330 Medicago truncatula HOM05D004723 ORTHO05D006176 1.9e-21 108.6 99 50.5
COL.COLO4_33606 Corchorus olitorius HOM05D004723 ORTHO05D006176 1.6e-20 105.5 243 45.3
Thhalv10017085m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 4.8e-20 104.0 185 39.5
TPR.G330 Trifolium pratense HOM05D004723 ORTHO05D006176 6.2e-20 103.6 109 48.6
C03p39890 Brassica napus HOM05D004723 ORTHO05D019910 4.0e-19 100.9 83 71.1
CDE05G0343 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 6.9e-19 100.1 269 40.9
TPR.G36124 Trifolium pratense HOM05D004723 ORTHO05D006176 2.0e-18 98.6 89 52.8
BolC3t16251H Brassica oleracea HOM05D004723 ORTHO05D019910 1.7e-17 95.5 83 68.7
BolC3t16252H Brassica oleracea HOM05D004723 ORTHO05D006176 2.5e-16 91.7 57 78.9
C03p39780 Brassica napus HOM05D004723 ORTHO05D019910 3.2e-16 91.3 118 55.9
TAR628G0893 Trochodendron aralioides HOM05D004723 ORTHO05D006176 2.7e-15 88.2 93 53.8
HPP92_019124 Vanilla planifolia HOM05D004723 ORTHO05D006176 1.1e-13 82.8 196 36.2
AagrBONN_evm.TU.Sc2ySwM_117.2819 Anthoceros agrestis HOM05D004723 ORTHO05D006176 4.3e-13 80.9 311 26.0
A03p32680 Brassica napus HOM05D004723 ORTHO05D019910 1.6e-12 79.0 104 53.8
Dinv40131 Davidia involucrata HOM05D004723 ORTHO05D006176 6.9e-11 73.6 74 58.1
Oeu046870.1 Olea europaea HOM05D004723 ORTHO05D006176 1.7e-09 68.9 146 39.7
TPR.G29970 Trifolium pratense HOM05D004723 ORTHO05D006176 1.7e-09 68.9 82 46.3
GSVIVG01005594001 Vitis vinifera HOM05D004723 ORTHO05D006176 6.5e-09 67.0 85 43.5
GSVIVG01005388001 Vitis vinifera HOM05D004723 ORTHO05D006176 8.4e-09 66.6 72 47.2
Medtr3g107350 Medicago truncatula HOM05D004723 ORTHO05D006176 1.4e-08 65.9 261 38.3
C03p39770 Brassica napus HOM05D059891 ORTHO05D040930 2.5e-08 65.1 146 37.7
Lsat_1_v5_gn_5_164041 Lactuca sativa HOM05D004723 ORTHO05D006176 2.1e-07 62.0 74 43.2
Nn1g05556 Nelumbo nucifera HOM05D004723 ORTHO05D006176 7.9e-07 60.1 48 52.1
Actinidia28727 Actinidia chinensis HOM05D004723 ORTHO05D006176 6.7e-06 57.0 84 50.0


User provided reference genes

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