Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g30387 Brassica carinata HOM05D004723 ORTHO05D006176 6.6e-280 967.2 691 100.0
C09p75390 Brassica napus HOM05D004723 ORTHO05D006176 2.3e-256 889.0 692 93.6
BolC5t35121H Brassica oleracea HOM05D004723 ORTHO05D006176 3.9e-256 888.3 701 93.2
BraA05t23177Z Brassica rapa HOM05D004723 ORTHO05D006176 7.4e-239 830.9 718 82.3
A05p44800 Brassica napus HOM05D004723 ORTHO05D006176 5.3e-237 824.7 721 81.8
BcaC05g30489 Brassica carinata HOM05D004723 ORTHO05D006176 6.5e-211 738.0 702 80.1
Sp3g00960 Schrenkiella parvula HOM05D004723 ORTHO05D006176 2.8e-190 669.5 707 72.0
Thhalv10020182m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 9.2e-173 611.3 721 66.2
AT3G01160 Arabidopsis thaliana HOM05D004723 ORTHO05D006176 1.3e-158 564.3 705 58.3
AL3G11100 Arabidopsis lyrata HOM05D004723 ORTHO05D006176 2.4e-157 560.1 725 61.0
Carub.0003s0100 Capsella rubella HOM05D004723 ORTHO05D006176 2.8e-145 520.0 712 65.0
CARHR075890 Cardamine hirsuta HOM05D004723 ORTHO05D006176 1.4e-144 517.7 698 62.5
BcaC01g04506 Brassica carinata HOM05D004723 ORTHO05D006176 3.2e-141 506.5 696 59.5
Aa31LG5G12460 Aethionema arabicum HOM05D004723 ORTHO05D006176 1.6e-140 504.2 726 64.2
Sed0008382 Sechium edule HOM05D004723 ORTHO05D006176 8.7e-123 445.3 715 48.3
CiPaw.07G062200 Carya illinoinensis HOM05D004723 ORTHO05D006176 2.4e-117 427.2 697 51.2
Atru.chr3.886 Acer truncatum HOM05D004723 ORTHO05D006176 3.2e-117 426.8 705 47.8
Atru.chr3.897 Acer truncatum HOM05D004723 ORTHO05D006176 3.2e-117 426.8 705 47.8
Ciclev10025027m.g Citrus clementina HOM05D004723 ORTHO05D006176 9.3e-117 425.2 725 55.9
GSVIVG01007226001 Vitis vinifera HOM05D004723 ORTHO05D006176 9.3e-117 425.2 687 46.0
Potri.005G108800 Populus trichocarpa HOM05D004723 ORTHO05D006176 2.3e-115 420.6 724 52.6
Nn5g30820 Nelumbo nucifera HOM05D004723 ORTHO05D006176 3.0e-115 420.2 693 46.3
Manes.10G142700 Manihot esculenta HOM05D004723 ORTHO05D006176 6.7e-115 419.1 698 44.8
Eucgr.I02314 Eucalyptus grandis HOM05D004723 ORTHO05D006176 1.1e-114 418.3 691 45.7
Gorai.012G044400 Gossypium raimondii HOM05D004723 ORTHO05D006176 1.1e-114 418.3 717 46.9
ECA232G2222 Erigeron canadensis HOM05D004723 ORTHO05D006176 2.5e-114 417.2 629 47.7
Hund14070 Selenicereus undatus HOM05D004723 ORTHO05D006176 4.3e-114 416.4 676 51.8
QL06p051414 Quercus lobata HOM05D004723 ORTHO05D006176 1.3e-113 414.8 701 53.8
Sabra05G0089200 Salix brachista HOM05D004723 ORTHO05D006176 8.2e-113 412.1 712 52.1
TAR628G1348 Trochodendron aralioides HOM05D004723 ORTHO05D006176 9.0e-112 408.7 631 52.8
Nitab4.5_0001789g0050 Nicotiana tabacum HOM05D004723 ORTHO05D006176 1.5e-111 407.9 704 54.5
Cfa007019 Carpinus fangiana HOM05D004723 ORTHO05D006176 2.0e-111 407.5 689 46.7
Haze_03712 Corylus avellana HOM05D004723 ORTHO05D006176 3.4e-111 406.8 684 47.8
Actinidia35669 Actinidia chinensis HOM05D004723 ORTHO05D006176 5.8e-111 406.0 691 48.6
HanXRQChr09g0257321 Helianthus annuus HOM05D004723 ORTHO05D006176 2.2e-110 404.1 677 44.6
TWI09G0244 Tripterygium wilfordii HOM05D004723 ORTHO05D006176 4.9e-110 402.9 719 48.7
PGR119G2074 Punica granatum HOM05D004723 ORTHO05D006176 6.5e-110 402.5 711 52.6
CSS0036730 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 1.4e-109 401.4 676 44.5
Cc07_g11220 Coffea canephora HOM05D004723 ORTHO05D006176 1.4e-109 401.4 689 44.3
Glyma.16G122800 Glycine max HOM05D004723 ORTHO05D006176 1.4e-109 401.4 704 52.6
Lj4A224T28 Lonicera japonica HOM05D004723 ORTHO05D006176 1.4e-109 401.4 699 48.1
MSTRG.10980 Avicennia marina HOM05D004723 ORTHO05D006176 4.2e-109 399.8 679 45.4
ClCG05G000690 Citrullus lanatus HOM05D004723 ORTHO05D006176 4.2e-109 399.8 691 41.5
Gohir.A05G376600 Gossypium hirsutum HOM05D004723 ORTHO05D006176 4.2e-109 399.8 724 46.5
Nitab4.5_0006899g0060 Nicotiana tabacum HOM05D004723 ORTHO05D006176 5.5e-109 399.4 718 49.2
arahy.Tifrunner.gnm1.ann1.DG5MW5 Arachis hypogaea HOM05D004723 ORTHO05D006176 7.1e-109 399.1 687 49.6
VMungo0251G3240 Vigna mungo HOM05D004723 ORTHO05D006176 7.1e-109 399.1 706 49.6
Duzib147G1420 Durio zibethinus HOM05D004723 ORTHO05D006176 9.3e-109 398.7 683 45.7
PGSC0003DMG400003588 Solanum tuberosum HOM05D004723 ORTHO05D006176 2.1e-108 397.5 705 53.5
Glyma.02G045200 Glycine max HOM05D004723 ORTHO05D006176 6.0e-108 396.0 709 52.6
CSS0012813 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 1.0e-107 395.2 702 45.7
Solyc02g083470.3 Solanum lycopersicum HOM05D004723 ORTHO05D006176 1.0e-107 395.2 697 52.5
MELO3C006009.2 Cucumis melo HOM05D004723 ORTHO05D006176 1.8e-107 394.4 682 43.0
Peaxi162Scf00198g00136 Petunia axillaris HOM05D004723 ORTHO05D006176 1.8e-107 394.4 704 51.8
CsaV3_3G007910 Cucumis sativus L. HOM05D004723 ORTHO05D006176 3.0e-107 393.7 503 48.1
Sc07g0001170 Simmondsia chinensis HOM05D004723 ORTHO05D006176 3.0e-107 393.7 709 47.1
Phvul.003G266400 Phaseolus vulgaris HOM05D004723 ORTHO05D006176 5.1e-107 392.9 705 52.8
Sopen02g028260 Solanum pennellii HOM05D004723 ORTHO05D006176 1.1e-106 391.7 699 54.1
Thecc.08G139800 Theobroma cacao HOM05D004723 ORTHO05D006176 1.1e-106 391.7 503 53.1
CANSAT25G3056 Cannabis sativa HOM05D004723 ORTHO05D006176 7.4e-106 389.0 712 49.4
MD02G1124600 Malus domestica HOM05D004723 ORTHO05D006176 1.3e-105 388.3 658 51.2
Prupe.7G173800 Prunus persica HOM05D004723 ORTHO05D006176 3.7e-105 386.7 716 46.8
arahy.Tifrunner.gnm1.ann1.7VD04T Arachis hypogaea HOM05D004723 ORTHO05D006176 1.8e-104 384.4 686 49.9
Psat7g090000 Pisum sativum HOM05D004723 ORTHO05D006176 5.3e-104 382.9 710 51.5
FAN19G1371 Fragaria x ananassa HOM05D004723 ORTHO05D006176 2.6e-103 380.6 695 52.9
Lsat_1_v5_gn_4_144101 Lactuca sativa HOM05D004723 ORTHO05D006176 5.9e-103 379.4 679 51.0
FvH4_1g11200 Fragaria vesca HOM05D004723 ORTHO05D006176 1.7e-102 377.9 698 53.3
FAN26G3228 Fragaria x ananassa HOM05D004723 ORTHO05D006176 8.5e-102 375.6 696 48.9
EL10Ac6g15170 Beta vulgaris HOM05D004723 ORTHO05D006176 2.5e-101 374.0 708 45.5
Cpa.g.sc6.304 Carica papaya HOM05D004723 ORTHO05D006176 4.2e-101 373.2 524 50.8
Lj4g0028127 Lotus japonicus HOM05D004723 ORTHO05D006176 4.2e-101 373.2 708 51.0
Lalb_Chr16g0391491 Lupinus albus HOM05D004723 ORTHO05D006176 1.6e-100 371.3 707 49.8
PSO675G8954 Papaver somniferum HOM05D004723 ORTHO05D006176 1.6e-100 371.3 714 45.1
PSO541G1155 Papaver somniferum HOM05D004723 ORTHO05D006176 2.1e-100 370.9 711 47.8
Migut.F01827 Erythranthe guttata HOM05D004723 ORTHO05D006176 1.4e-99 368.2 509 45.8
CAN.G890.41 Capsicum annuum HOM05D004723 ORTHO05D006176 1.8e-99 367.9 530 45.7
RcHm_v2.0_Chr2g0098611 Rosa chinensis HOM05D004723 ORTHO05D006176 6.7e-99 365.9 734 47.5
Ca_18264_v3 Cicer arietinum L. HOM05D004723 ORTHO05D006176 2.0e-98 364.4 696 50.0
Rhsim08G0030800 Rhododendron simsii HOM05D004723 ORTHO05D006176 2.0e-98 364.4 620 46.1
ATR0665G361 Amborella trichopoda HOM05D004723 ORTHO05D006176 5.7e-98 362.8 505 50.5
FAN23G0842 Fragaria x ananassa HOM05D004723 ORTHO05D006176 2.2e-97 360.9 502 56.8
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 6.9e-96 355.9 714 45.7
DCAR_024713 Daucus carota HOM05D004723 ORTHO05D006176 3.4e-95 353.6 734 44.8
AUR62003701 Chenopodium quinoa HOM05D004723 ORTHO05D006176 4.5e-95 353.2 730 45.3
Medtr4g096820 Medicago truncatula HOM05D004723 ORTHO05D006176 4.5e-95 353.2 721 50.8
SEGI_08029 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 2.9e-94 350.5 513 48.7
SGA_v2.0_scaffold111G31425 Striga asiatica HOM05D004723 ORTHO05D006176 3.9e-91 340.1 577 46.3
Aqoxy6G02087 Aquilegia oxysepala HOM05D004723 ORTHO05D006176 4.4e-90 336.7 776 44.3
Gohir.1Z049326 Gossypium hirsutum HOM05D004723 ORTHO05D006176 4.4e-90 336.7 711 42.2
AUR62018009 Chenopodium quinoa HOM05D004723 ORTHO05D006176 1.7e-89 334.7 531 45.4
vmacro18436 Vaccinium macrocarpon HOM05D004723 ORTHO05D006176 2.2e-89 334.3 695 45.5
Dinv40130 Davidia involucrata HOM05D004723 ORTHO05D006176 3.7e-89 333.6 299 59.5
Ah.01g003790 Amaranthus hybridus HOM05D004723 ORTHO05D006176 3.5e-87 327.0 690 45.7
TPR.G4863 Trifolium pratense HOM05D004723 ORTHO05D006176 5.9e-87 326.2 528 53.4
SMO232G0062 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 2.3e-83 314.3 633 41.9
Oeu005338.2 Olea europaea HOM05D004723 ORTHO05D006176 2.6e-82 310.8 715 42.0
AagrBONN_evm.TU.Sc2ySwM_117.2822 Anthoceros agrestis HOM05D004723 ORTHO05D006176 3.7e-81 307.0 739 38.6
Medtr4g073330 Medicago truncatula HOM05D004723 ORTHO05D006176 1.2e-79 302.0 713 41.4
CDE05G0976 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 2.2e-78 297.7 384 54.9
SMO239G0207 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 1.5e-77 295.0 634 40.1
Zm00001eb323180 Zea mays HOM05D004723 ORTHO05D006176 3.3e-74 283.9 649 42.5
SHI00027 Sapria himalayana HOM05D004723 ORTHO05D006176 1.1e-72 278.9 614 37.1
AagrBONN_evm.TU.Sc2ySwM_368.2747 Anthoceros agrestis HOM05D004723 ORTHO05D006176 1.6e-71 275.0 734 38.4
Os07g0531700 Oryza sativa ssp. japonica HOM05D004723 ORTHO05D006176 7.7e-71 272.7 541 40.5
Gohir.1Z049627 Gossypium hirsutum HOM05D004723 ORTHO05D006176 2.3e-67 261.2 438 46.3
Pp3c17_7210 Physcomitrium patens HOM05D004723 ORTHO05D006176 9.1e-64 249.2 541 36.2
C03p39900 Brassica napus HOM05D004723 ORTHO05D006176 1.2e-63 248.8 195 66.2
MD15G1238700 Malus domestica HOM05D004723 ORTHO05D006176 3.1e-56 224.2 339 52.5
TAR628G1016 Trochodendron aralioides HOM05D004723 ORTHO05D005421 1.3e-54 218.8 197 56.3
Mapoly0061s0018 Marchantia polymorpha HOM05D004723 ORTHO05D006176 2.9e-54 217.6 567 34.4
HPP92_019125 Vanilla planifolia HOM05D004723 ORTHO05D006176 3.6e-52 210.7 195 53.3
Rhsim08G0030900 Rhododendron simsii HOM05D004723 ORTHO05D006176 4.7e-52 210.3 468 40.0
Thecc.01G155000 Theobroma cacao HOM05D004723 ORTHO05D006176 2.0e-47 194.9 365 46.8
CBR_g41392 Chara braunii HOM05D004723 ORTHO05D006176 4.3e-45 187.2 221 47.5
PRCOL_00004947 Prasinoderma coloniale HOM05D004723 ORTHO05D006176 9.2e-40 169.5 333 34.8
TPR.G3121 Trifolium pratense HOM05D004723 ORTHO05D006176 4.6e-39 167.2 203 46.3
Gohir.D04G039432 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.9e-37 161.8 277 44.0
MCO13G085 Micromonas commoda HOM05D004723 ORTHO05D006176 9.5e-37 159.5 430 36.5
Cre10.g452500 Chlamydomonas reinhardtii HOM05D004723 ORTHO05D006176 2.0e-34 151.8 238 39.5
BolC3t16253H Brassica oleracea HOM05D004723 ORTHO05D006176 1.2e-31 142.5 113 67.3
BraA03t12436Z Brassica rapa HOM05D004723 ORTHO05D019910 1.1e-24 119.4 123 65.0
BcaC01g04505 Brassica carinata HOM05D004723 ORTHO05D019910 7.8e-23 113.2 122 59.8
Medtr3g107330 Medicago truncatula HOM05D004723 ORTHO05D006176 6.6e-22 110.2 99 51.5
MD15G1238600 Malus domestica HOM05D004723 ORTHO05D006176 2.8e-20 104.8 261 38.3
COL.COLO4_34179 Corchorus olitorius HOM05D004723 ORTHO05D006176 6.2e-20 103.6 497 25.8
Thhalv10017085m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 6.2e-20 103.6 173 41.6
THA.LOC104821168 Tarenaya hassleriana HOM05D004723 ORTHO05D006176 1.1e-19 102.8 141 48.2
TPR.G330 Trifolium pratense HOM05D004723 ORTHO05D006176 1.1e-19 102.8 102 52.0
C03p39890 Brassica napus HOM05D004723 ORTHO05D019910 7.6e-18 96.7 85 68.2
CDE05G0343 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 7.6e-18 96.7 271 39.9
TPR.G36124 Trifolium pratense HOM05D004723 ORTHO05D006176 1.3e-17 95.9 89 53.9
A03p32680 Brassica napus HOM05D004723 ORTHO05D019910 3.2e-16 91.3 83 66.3
BolC3t16251H Brassica oleracea HOM05D004723 ORTHO05D019910 3.2e-16 91.3 85 65.9
COL.COLO4_33606 Corchorus olitorius HOM05D004723 ORTHO05D006176 5.4e-16 90.5 245 42.0
BolC3t16252H Brassica oleracea HOM05D004723 ORTHO05D006176 7.1e-16 90.1 58 74.1
TAR628G0893 Trochodendron aralioides HOM05D004723 ORTHO05D006176 9.3e-16 89.7 95 53.7
AagrBONN_evm.TU.Sc2ySwM_117.2819 Anthoceros agrestis HOM05D004723 ORTHO05D006176 1.2e-15 89.4 149 37.6
C03p39780 Brassica napus HOM05D004723 ORTHO05D019910 2.1e-15 88.6 117 55.6
HPP92_019124 Vanilla planifolia HOM05D004723 ORTHO05D006176 1.5e-13 82.4 219 32.9
GSVIVG01005594001 Vitis vinifera HOM05D004723 ORTHO05D006176 1.5e-10 72.4 79 46.8
TPR.G29970 Trifolium pratense HOM05D004723 ORTHO05D006176 2.6e-10 71.6 75 50.7
GSVIVG01005388001 Vitis vinifera HOM05D004723 ORTHO05D006176 5.8e-10 70.5 78 46.2
Dinv40131 Davidia involucrata HOM05D004723 ORTHO05D006176 7.6e-10 70.1 69 58.0
C03p39770 Brassica napus HOM05D059891 ORTHO05D040930 6.4e-09 67.0 69 55.1
Oeu046870.1 Olea europaea HOM05D004723 ORTHO05D006176 5.4e-08 63.9 142 39.4
Nn1g05556 Nelumbo nucifera HOM05D004723 ORTHO05D006176 1.6e-07 62.4 48 54.2
Lsat_1_v5_gn_5_164041 Lactuca sativa HOM05D004723 ORTHO05D006176 4.6e-07 60.8 75 42.7
SEGI_25425 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 1.3e-06 59.3 58 53.4
Medtr3g107350 Medicago truncatula HOM05D004723 ORTHO05D006176 2.3e-06 58.5 285 38.2
Thecc.01G154900 Theobroma cacao HOM05D004723 ORTHO05D006176 3.0e-06 58.2 81 42.0


User provided reference genes

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