Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g30339 Brassica carinata HOM05D004822 ORTHO05D005632 1.4e-195 686.0 341 100.0
Sp3g02040 Schrenkiella parvula HOM05D004822 ORTHO05D005632 2.7e-56 223.4 209 60.3
A05p44150 Brassica napus HOM05D004822 ORTHO05D005632 4.8e-50 202.6 208 57.2
BraSC90t46695Z Brassica rapa HOM05D004822 ORTHO05D005632 4.8e-50 202.6 208 57.2
Carub.0003s0211 Capsella rubella HOM05D004822 ORTHO05D005632 5.4e-49 199.1 210 57.1
AT3G02980 Arabidopsis thaliana HOM05D004822 ORTHO05D005632 9.8e-43 178.3 200 55.0
THA.LOC104827203 Tarenaya hassleriana HOM05D004822 ORTHO05D005632 6.6e-39 165.6 208 50.5
AL6G27820 Arabidopsis lyrata HOM05D004822 ORTHO05D005632 1.5e-38 164.5 214 50.5
CARHR196360 Cardamine hirsuta HOM05D004822 ORTHO05D005632 1.5e-38 164.5 214 49.5
Sp6g27330 Schrenkiella parvula HOM05D004822 ORTHO05D005632 5.6e-38 162.5 214 50.0
Carub.0006s1502 Capsella rubella HOM05D004822 ORTHO05D005632 2.1e-37 160.6 214 48.6
THA.LOC104820895 Tarenaya hassleriana HOM05D004822 ORTHO05D005632 2.8e-37 160.2 207 50.2
Thhalv10014541m.g Eutrema salsugineum HOM05D004822 ORTHO05D005632 4.7e-37 159.5 214 49.1
AT5G16800 Arabidopsis thaliana HOM05D004822 ORTHO05D005632 6.1e-37 159.1 214 49.1
Aa31LG5G13470 Aethionema arabicum HOM05D004822 ORTHO05D005632 4.0e-36 156.4 196 46.9
BcaB01g05242 Brassica carinata HOM05D004822 ORTHO05D005632 1.5e-35 154.5 208 49.0
A03p07960 Brassica napus HOM05D004822 ORTHO05D005632 1.5e-35 154.5 208 49.0
C03p09170 Brassica napus HOM05D004822 ORTHO05D005632 1.5e-35 154.5 208 49.0
BolC3t13414H Brassica oleracea HOM05D004822 ORTHO05D005632 1.5e-35 154.5 208 49.0
BraA03t10121Z Brassica rapa HOM05D004822 ORTHO05D005632 1.5e-35 154.5 208 49.0
A10p22430 Brassica napus HOM05D004822 ORTHO05D005632 3.4e-35 153.3 214 47.7
C09p60280 Brassica napus HOM05D004822 ORTHO05D005632 7.5e-35 152.1 214 47.2
BcaB01g04968 Brassica carinata HOM05D004822 ORTHO05D005632 9.8e-35 151.8 208 48.1
BcaC04g18845 Brassica carinata HOM05D004822 ORTHO05D005632 2.2e-34 150.6 214 46.7
BolC9t58861H Brassica oleracea HOM05D004822 ORTHO05D005632 3.7e-34 149.8 217 47.0
Aa31LG11G12780 Aethionema arabicum HOM05D004822 ORTHO05D005632 6.4e-34 149.1 218 45.4
BraA10t44302Z Brassica rapa HOM05D004822 ORTHO05D005632 1.8e-33 147.5 223 45.7
AL3G12440 Arabidopsis lyrata HOM05D004822 ORTHO05D005632 1.0e-31 141.7 176 50.0
Duzib177G1199 Durio zibethinus HOM05D004822 ORTHO05D005632 1.7e-31 141.0 202 45.5
TWI12G0583 Tripterygium wilfordii HOM05D004822 ORTHO05D005632 4.7e-29 132.9 202 41.1
COL.COLO4_15238 Corchorus olitorius HOM05D004822 ORTHO05D005632 6.2e-29 132.5 200 42.5
TWI18G0151 Tripterygium wilfordii HOM05D004822 ORTHO05D005632 1.4e-28 131.3 202 41.6
Sabra13G0073000 Salix brachista HOM05D004822 ORTHO05D005632 3.1e-28 130.2 203 41.4
Duzib106G0609 Durio zibethinus HOM05D004822 ORTHO05D005632 6.8e-28 129.0 207 40.6
Atru.chr12.1891 Acer truncatum HOM05D004822 ORTHO05D005632 8.9e-28 128.6 203 39.4
Ciclev10021817m.g Citrus clementina HOM05D004822 ORTHO05D005632 1.5e-27 127.9 203 40.4
Cfa016047 Carpinus fangiana HOM05D004822 ORTHO05D005632 2.6e-27 127.1 209 38.8
Thecc.05G215800 Theobroma cacao HOM05D004822 ORTHO05D005632 3.4e-27 126.7 200 41.5
Lalb_Chr01g0000881 Lupinus albus HOM05D004822 ORTHO05D005632 3.7e-26 123.2 207 41.5
Dinv17249 Davidia involucrata HOM05D004822 ORTHO05D005632 8.3e-26 122.1 211 40.3
CANSAT56G1711 Cannabis sativa HOM05D004822 ORTHO05D005632 1.1e-25 121.7 208 38.9
Prupe.2G327400 Prunus persica HOM05D004822 ORTHO05D005632 1.9e-25 120.9 210 40.5
RcHm_v2.0_Chr1g0384361 Rosa chinensis HOM05D004822 ORTHO05D005632 1.9e-25 120.9 208 39.9
MSTRG.26924 Avicennia marina HOM05D004822 ORTHO05D005632 3.2e-25 120.2 209 39.2
FvH4_7g34080 Fragaria vesca HOM05D004822 ORTHO05D005632 3.2e-25 120.2 206 39.8
Cc02_g00190 Coffea canephora HOM05D004822 ORTHO05D005632 4.1e-25 119.8 210 37.1
Gohir.D08G241600 Gossypium hirsutum HOM05D004822 ORTHO05D005632 5.4e-25 119.4 200 41.5
Potri.019G050700 Populus trichocarpa HOM05D004822 ORTHO05D005632 5.4e-25 119.4 203 39.4
PGR042G2086 Punica granatum HOM05D004822 ORTHO05D005632 5.4e-25 119.4 211 38.4
Hma1.2p1_0649F.1_g195250 Hydrangea macrophylla HOM05D004822 ORTHO05D005632 9.2e-25 118.6 197 38.1
Manes.09G127500 Manihot esculenta HOM05D004822 ORTHO05D005632 1.2e-24 118.2 203 38.4
arahy.Tifrunner.gnm1.ann1.TC8PXF Arachis hypogaea HOM05D004822 ORTHO05D005632 1.6e-24 117.9 229 36.7
Gohir.A08G221666 Gossypium hirsutum HOM05D004822 ORTHO05D005632 1.6e-24 117.9 200 40.5
TAR362G0773 Trochodendron aralioides HOM05D004822 ORTHO05D005632 1.6e-24 117.9 200 38.5
Migut.F00086 Erythranthe guttata HOM05D004822 ORTHO05D005632 2.0e-24 117.5 198 39.9
Nitab4.5_0000021g0700 Nicotiana tabacum HOM05D004822 ORTHO05D005632 3.5e-24 116.7 201 40.8
Nitab4.5_0004530g0010 Nicotiana tabacum HOM05D004822 ORTHO05D005632 3.5e-24 116.7 215 39.1
Potri.013G079900 Populus trichocarpa HOM05D004822 ORTHO05D005632 3.5e-24 116.7 185 41.1
QL09p023219 Quercus lobata HOM05D004822 ORTHO05D005632 3.5e-24 116.7 198 38.4
MELO3C021888.2 Cucumis melo HOM05D004822 ORTHO05D005632 4.6e-24 116.3 211 39.8
arahy.Tifrunner.gnm1.ann1.UL380H Arachis hypogaea HOM05D004822 ORTHO05D005632 7.8e-24 115.5 207 38.2
Gorai.004G256900 Gossypium raimondii HOM05D004822 ORTHO05D005632 7.8e-24 115.5 191 41.4
CSS0024551 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 3.0e-23 113.6 210 37.6
CsaV3_2G036410 Cucumis sativus L. HOM05D004822 ORTHO05D005632 3.0e-23 113.6 209 38.8
Dinv29145 Davidia involucrata HOM05D004822 ORTHO05D005632 3.9e-23 113.2 202 38.1
Psat2g189120 Pisum sativum HOM05D004822 ORTHO05D005632 3.9e-23 113.2 204 35.8
LjContig00222g0020254 Lotus japonicus HOM05D004822 ORTHO05D005632 6.6e-23 112.5 87 64.4
Lalb_Chr19g0140001 Lupinus albus HOM05D004822 ORTHO05D005632 6.6e-23 112.5 206 38.8
PGSC0003DMG400003148 Solanum tuberosum HOM05D004822 ORTHO05D005632 6.6e-23 112.5 240 35.4
CSS0024699 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 8.6e-23 112.1 196 38.3
Sed0007243 Sechium edule HOM05D004822 ORTHO05D005632 8.6e-23 112.1 216 38.9
CAN.G1131.24 Capsicum annuum HOM05D004822 ORTHO05D005632 1.1e-22 111.7 199 38.7
Aqoxy3G02240 Aquilegia oxysepala HOM05D004822 ORTHO05D005632 1.5e-22 111.3 216 37.0
Solyc03g097140.3 Solanum lycopersicum HOM05D004822 ORTHO05D005632 1.5e-22 111.3 214 38.3
unitig_747.g21929 Utricularia gibba HOM05D004822 ORTHO05D005632 1.5e-22 111.3 210 37.6
BolC5t35048H Brassica oleracea HOM05D004822 ORTHO05D005632 1.9e-22 110.9 152 48.0
MD01G1237100 Malus domestica HOM05D004822 ORTHO05D005632 1.9e-22 110.9 203 37.9
ClCG09G016920 Citrullus lanatus HOM05D004822 ORTHO05D005632 2.5e-22 110.5 205 36.6
TPR.G37975 Trifolium pratense HOM05D004822 ORTHO05D005632 2.5e-22 110.5 204 35.8
EL10Ac3g05059 Beta vulgaris HOM05D004822 ORTHO05D005632 4.3e-22 109.8 203 36.9
Gorai.013G103600 Gossypium raimondii HOM05D004822 ORTHO05D005632 5.6e-22 109.4 86 65.1
Peaxi162Scf00516g00674 Petunia axillaris HOM05D004822 ORTHO05D005632 5.6e-22 109.4 212 37.7
Haze_00399 Corylus avellana HOM05D004822 ORTHO05D005632 9.5e-22 108.6 77 70.1
CiPaw.06G034300 Carya illinoinensis HOM05D004822 ORTHO05D005632 1.2e-21 108.2 182 38.5
MD07G1309700 Malus domestica HOM05D004822 ORTHO05D005632 1.2e-21 108.2 205 36.1
Hund09803 Selenicereus undatus HOM05D004822 ORTHO05D005632 1.2e-21 108.2 209 36.8
GSVIVG01024375001 Vitis vinifera HOM05D004822 ORTHO05D005632 2.8e-21 107.1 191 37.7
CiPaw.05G216100 Carya illinoinensis HOM05D004822 ORTHO05D005632 3.6e-21 106.7 77 67.5
HanXRQChr16g0512131 Helianthus annuus HOM05D004822 ORTHO05D005632 6.2e-21 105.9 207 36.2
Nitab4.5_0000150g0020 Nicotiana tabacum HOM05D004822 ORTHO05D005632 1.1e-20 105.1 203 39.9
arahy.Tifrunner.gnm1.ann1.YEB8JM Arachis hypogaea HOM05D004822 ORTHO05D005632 1.8e-20 104.4 186 37.6
Glyma.11G009600 Glycine max HOM05D004822 ORTHO05D005632 1.8e-20 104.4 87 59.8
HanXRQChr08g0231351 Helianthus annuus HOM05D004822 ORTHO05D005632 2.3e-20 104.0 207 35.7
Medtr5g007400 Medicago truncatula HOM05D004822 ORTHO05D005632 2.3e-20 104.0 204 33.8
Oeu007515.1 Olea europaea HOM05D004822 ORTHO05D005632 2.3e-20 104.0 202 37.1
C05p63790 Brassica napus HOM05D000387 ORTHO05D005632 3.1e-20 103.6 53 94.3
Peaxi162Scf00133g00611 Petunia axillaris HOM05D004822 ORTHO05D005632 3.1e-20 103.6 241 34.0
Rhsim03G0222800 Rhododendron simsii HOM05D004822 ORTHO05D005632 3.1e-20 103.6 205 36.6
vmacro06525 Vaccinium macrocarpon HOM05D004822 ORTHO05D005632 3.1e-20 103.6 205 35.6
Actinidia08752 Actinidia chinensis HOM05D004822 ORTHO05D005632 4.0e-20 103.2 86 59.3
Lsat_1_v5_gn_9_47720 Lactuca sativa HOM05D004822 ORTHO05D005632 4.0e-20 103.2 88 55.7
Lj3g0022054 Lotus japonicus HOM05D004822 ORTHO05D005632 5.2e-20 102.8 87 59.8
SalBow4G2092 Salvia bowleyana HOM05D004822 ORTHO05D005632 5.2e-20 102.8 217 34.6
SalBow4G3298 Salvia bowleyana HOM05D004822 ORTHO05D005632 5.2e-20 102.8 217 34.6
ECA232G1387 Erigeron canadensis HOM05D004822 ORTHO05D005632 6.8e-20 102.4 213 35.2
Eucgr.K00079 Eucalyptus grandis HOM05D004822 ORTHO05D005632 6.8e-20 102.4 197 38.1
Glyma.01G233200 Glycine max HOM05D004822 ORTHO05D005632 1.2e-19 101.7 87 59.8
Phvul.002G040700 Phaseolus vulgaris HOM05D004822 ORTHO05D005632 1.5e-19 101.3 87 58.6
Sopen03g027880 Solanum pennellii HOM05D004822 ORTHO05D005632 2.0e-19 100.9 269 30.9
Lj3A886T38 Lonicera japonica HOM05D004822 ORTHO05D005632 4.4e-19 99.8 86 55.8
Nitab4.5_0001108g0050 Nicotiana tabacum HOM05D004822 ORTHO05D005632 5.8e-19 99.4 79 60.8
SEGI_16512 Sequoiadendron giganteum HOM05D004822 ORTHO05D005632 5.8e-19 99.4 213 35.2
DCAR_020414 Daucus carota HOM05D004822 ORTHO05D005632 1.3e-18 98.2 201 32.3
CSS0045344 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 1.7e-18 97.8 207 33.8
arahy.Tifrunner.gnm1.ann1.IXL9K3 Arachis hypogaea HOM05D004822 ORTHO05D005632 2.9e-18 97.1 87 57.5
Sc25g0001230 Simmondsia chinensis HOM05D004822 ORTHO05D005632 2.9e-18 97.1 211 37.0
HPP92_014856 Vanilla planifolia HOM05D004822 ORTHO05D005632 2.9e-18 97.1 86 57.0
CSS0013609 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 4.9e-18 96.3 91 52.7
Pp3c21_19030 Physcomitrium patens HOM05D004822 ORTHO05D005632 1.1e-17 95.1 86 54.7
Eucgr.H04873 Eucalyptus grandis HOM05D004822 ORTHO05D005632 1.4e-17 94.7 86 57.0
DCAR_010536 Daucus carota HOM05D004822 ORTHO05D005632 1.9e-17 94.4 230 30.4
BcaC04g18846 Brassica carinata HOM05D004822 ORTHO05D005632 3.2e-17 93.6 171 40.4
AUR62028196 Chenopodium quinoa HOM05D004822 ORTHO05D005632 4.1e-17 93.2 101 49.5
TAR374G1016 Trochodendron aralioides HOM05D004822 ORTHO05D005632 1.2e-16 91.7 82 54.9
Zm00001eb251310 Zea mays HOM05D004822 ORTHO05D005632 2.1e-16 90.9 86 54.7
Ah.04g156230 Amaranthus hybridus HOM05D004822 ORTHO05D005632 2.7e-16 90.5 77 53.2
AUR62002079 Chenopodium quinoa HOM05D004822 ORTHO05D005632 3.5e-16 90.1 77 57.1
Nn1g00175 Nelumbo nucifera HOM05D004822 ORTHO05D005632 4.6e-16 89.7 77 59.7
Gohir.D13G099300 Gossypium hirsutum HOM05D004822 ORTHO05D005632 6.0e-16 89.4 75 60.0
SHI29591 Sapria himalayana HOM05D004822 ORTHO05D005632 6.0e-16 89.4 199 34.7
Mapoly0133s0015 Marchantia polymorpha HOM05D004822 ORTHO05D005632 1.7e-15 87.8 88 51.1
C05p63530 Brassica napus HOM05D018205 ORTHO05D021387 1.1e-14 85.1 164 42.1
Pp3c19_16350 Physcomitrium patens HOM05D004822 ORTHO05D005632 1.1e-14 85.1 86 48.8
SMO146G0253 Selaginella moellendorffii HOM05D004822 ORTHO05D005632 1.1e-14 85.1 79 50.6
BcaC05g29876 Brassica carinata HOM05D018205 ORTHO05D021387 7.3e-14 82.4 164 41.5
ATR0829G204 Amborella trichopoda HOM05D004822 ORTHO05D005632 2.1e-13 80.9 86 48.8
SGA_v2.0_scaffold44G16902 Striga asiatica HOM05D004822 ORTHO05D005632 8.1e-13 79.0 182 33.5
Rhsim09G0213500 Rhododendron simsii HOM05D004822 ORTHO05D005632 1.8e-12 77.8 204 33.3
arahy.Tifrunner.gnm1.ann1.KDM1H7 Arachis hypogaea HOM05D004822 ORTHO05D005632 3.4e-11 73.6 90 45.6
arahy.Tifrunner.gnm1.ann1.U456D3 Arachis hypogaea HOM05D004822 ORTHO05D005632 3.4e-11 73.6 90 45.6
CBR_g57081 Chara braunii HOM05D004822 ORTHO05D005632 7.6e-11 72.4 90 42.2
Sed0002247 Sechium edule HOM05D004822 ORTHO05D005632 7.6e-11 72.4 180 33.3
BolC3t19099H Brassica oleracea HOM05D001710 ORTHO05D014486 7.1e-09 65.9 52 63.5
Ca_24437_v3 Cicer arietinum L. HOM05D004822 ORTHO05D005632 1.2e-08 65.1 47 66.0
AL3G12900 Arabidopsis lyrata HOM05D018205 ORTHO05D021387 1.6e-08 64.7 98 46.9
CDE06G0869 Ceratophyllum demersum HOM05D000380 ORTHO05D000561 3.5e-08 63.5 60 50.0
PGR142G2504 Punica granatum HOM05D004822 ORTHO05D005632 6.0e-08 62.8 85 40.0
Duzib128G1067 Durio zibethinus HOM05D004822 ORTHO05D005632 1.9e-06 57.8 160 29.4


User provided reference genes

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