Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g30334 Brassica carinata HOM05D007258 ORTHO05D008852 6.9e-125 450.7 229 100.0
BcaC05g30335 Brassica carinata HOM05D007258 ORTHO05D008852 1.9e-111 406.0 229 92.1
BraA05t23151Z Brassica rapa HOM05D007258 ORTHO05D008852 2.0e-108 396.0 229 89.5
A05p45100 Brassica napus HOM05D007258 ORTHO05D008852 3.5e-105 385.2 229 89.1
C09p75600 Brassica napus HOM05D007258 ORTHO05D008852 3.0e-104 382.1 196 96.4
BolC5t35098H Brassica oleracea HOM05D007258 ORTHO05D008852 3.0e-104 382.1 196 96.4
Sp3g01290 Schrenkiella parvula HOM05D007258 ORTHO05D008852 9.6e-103 377.1 219 86.8
Carub.0003s0134 Capsella rubella HOM05D007258 ORTHO05D008852 1.3e-102 376.7 226 85.8
AL3G11470 Arabidopsis lyrata HOM05D007258 ORTHO05D008852 6.2e-102 374.4 226 85.0
Thhalv10021265m.g Eutrema salsugineum HOM05D007258 ORTHO05D008852 6.9e-101 370.9 230 84.3
CARHR076190 Cardamine hirsuta HOM05D007258 ORTHO05D008852 1.0e-99 367.1 225 84.0
AT3G02220 Arabidopsis thaliana HOM05D007258 ORTHO05D008852 1.7e-99 366.3 226 83.6
Aa31LG5G12750 Aethionema arabicum HOM05D007258 ORTHO05D008852 3.3e-87 325.5 191 85.3
THA.LOC104802980 Tarenaya hassleriana HOM05D007258 ORTHO05D008852 2.6e-79 299.3 218 74.3
QL02p066408 Quercus lobata HOM05D007258 ORTHO05D008852 3.5e-68 262.3 184 71.7
Gorai.001G208500 Gossypium raimondii HOM05D007258 ORTHO05D008852 5.0e-67 258.5 193 67.9
Glyma.13G053500 Glycine max HOM05D007258 ORTHO05D008852 1.9e-66 256.5 218 62.8
Gohir.D07G187600 Gossypium hirsutum HOM05D007258 ORTHO05D008852 1.9e-66 256.5 193 67.9
Thecc.04G103600 Theobroma cacao HOM05D007258 ORTHO05D008852 1.2e-65 253.8 193 65.8
VMungo0464G1058 Vigna mungo HOM05D007258 ORTHO05D008852 2.1e-65 253.1 197 65.0
Haze_25378 Corylus avellana HOM05D007258 ORTHO05D008852 2.7e-65 252.7 181 69.6
Phvul.004G041100 Phaseolus vulgaris HOM05D007258 ORTHO05D008852 2.7e-65 252.7 214 63.6
CAN.G497.87 Capsicum annuum HOM05D007258 ORTHO05D008852 4.7e-65 251.9 172 72.7
CANSAT64G1331 Cannabis sativa HOM05D007258 ORTHO05D008852 8.0e-65 251.1 173 71.7
Medtr6g015855 Medicago truncatula HOM05D007258 ORTHO05D008852 8.0e-65 251.1 176 68.8
Lj2g0017705 Lotus japonicus HOM05D007258 ORTHO05D008852 1.0e-64 250.8 201 64.2
Manes.02G057800 Manihot esculenta HOM05D007258 ORTHO05D008852 1.0e-64 250.8 193 67.9
Duzib138G1000 Durio zibethinus HOM05D007258 ORTHO05D008852 2.3e-64 249.6 192 66.1
CSS0017666 Camellia sinensis var. sinensis HOM05D007258 ORTHO05D008852 4.0e-64 248.8 174 70.1
Lalb_Chr21g0318311 Lupinus albus HOM05D007258 ORTHO05D008852 4.0e-64 248.8 195 64.1
Cpa.g.sc14.201 Carica papaya HOM05D007258 ORTHO05D008852 5.2e-64 248.4 178 70.2
Hma1.2p1_0069F.1_g037420 Hydrangea macrophylla HOM05D007258 ORTHO05D008852 5.2e-64 248.4 178 69.7
Psat1g066400 Pisum sativum HOM05D007258 ORTHO05D008852 6.8e-64 248.1 192 66.1
Potri.004G116800 Populus trichocarpa HOM05D007258 ORTHO05D008852 1.2e-63 247.3 198 63.6
SGA_v2.0_scaffold148G36428 Striga asiatica HOM05D003455 ORTHO05D004165 1.2e-63 247.3 186 65.6
PGSC0003DMG400001370 Solanum tuberosum HOM05D007258 ORTHO05D008852 1.5e-63 246.9 175 70.9
Solyc02g089100.3 Solanum lycopersicum HOM05D007258 ORTHO05D008852 4.4e-63 245.4 172 70.3
unitig_32.g11768 Utricularia gibba HOM05D007258 ORTHO05D008852 4.4e-63 245.4 181 66.9
Sabra04G0070300 Salix brachista HOM05D000830 ORTHO05D008852 5.7e-63 245.0 196 63.3
Sopen02g033890 Solanum pennellii HOM05D007258 ORTHO05D008852 5.7e-63 245.0 172 70.9
TPR.G4313 Trifolium pratense HOM05D007258 ORTHO05D008852 7.5e-63 244.6 212 61.8
Nitab4.5_0009044g0050 Nicotiana tabacum HOM05D007258 ORTHO05D008852 2.8e-62 242.7 169 71.0
arahy.Tifrunner.gnm1.ann1.TJ02B2 Arachis hypogaea HOM05D007258 ORTHO05D008852 6.3e-62 241.5 220 60.9
CiPaw.03G085000 Carya illinoinensis HOM05D007258 ORTHO05D008852 6.3e-62 241.5 173 71.1
TWI34G1392 Tripterygium wilfordii HOM05D007258 ORTHO05D008852 6.3e-62 241.5 187 65.2
arahy.Tifrunner.gnm1.ann1.GI8EHX Arachis hypogaea HOM05D007258 ORTHO05D008852 8.3e-62 241.1 220 60.5
PGR004G1744 Punica granatum HOM05D007258 ORTHO05D008852 1.4e-61 240.4 177 67.8
Ciclev10012686m.g Citrus clementina HOM05D007258 ORTHO05D008852 1.8e-61 240.0 174 66.7
MD17G1063700 Malus domestica HOM05D007258 ORTHO05D008852 2.4e-61 239.6 168 70.8
Nn4g23475 Nelumbo nucifera HOM05D007258 ORTHO05D008852 7.0e-61 238.0 176 64.8
Rhsim08G0075900 Rhododendron simsii HOM05D007258 ORTHO05D008852 7.0e-61 238.0 177 67.8
Migut.K01261 Erythranthe guttata HOM05D007258 ORTHO05D008852 4.5e-60 235.3 171 67.3
HanXRQChr09g0264921 Helianthus annuus HOM05D007258 ORTHO05D008852 1.3e-59 233.8 171 67.8
Sc11g0008720 Simmondsia chinensis HOM05D007258 ORTHO05D008852 1.3e-59 233.8 178 66.3
Eucgr.L02288 Eucalyptus grandis HOM05D007258 ORTHO05D008852 3.8e-59 232.3 235 55.7
Lsat_1_v5_gn_4_173160 Lactuca sativa HOM05D007258 ORTHO05D008852 3.8e-59 232.3 170 67.1
Prupe.3G250800 Prunus persica HOM05D007258 ORTHO05D008852 3.8e-59 232.3 168 69.6
MELO3C022042.2 Cucumis melo HOM05D007258 ORTHO05D008852 5.0e-59 231.9 171 66.7
AUR62009496 Chenopodium quinoa HOM05D007258 ORTHO05D008852 1.1e-58 230.7 174 66.7
ECA232G3790 Erigeron canadensis HOM05D007258 ORTHO05D008852 1.1e-58 230.7 170 67.1
MD17G1063100 Malus domestica HOM05D007258 ORTHO05D008852 1.1e-58 230.7 177 66.7
Cfa010690 Carpinus fangiana HOM05D007258 ORTHO05D008852 1.9e-58 229.9 138 78.3
Cc07_g04400 Coffea canephora HOM05D007258 ORTHO05D008852 1.9e-58 229.9 171 66.7
HPP92_001847 Vanilla planifolia HOM05D007258 ORTHO05D008852 1.9e-58 229.9 140 77.1
COL.COLO4_03895 Corchorus olitorius HOM05D007258 ORTHO05D008852 3.2e-58 229.2 139 77.0
Glyma.19G033200 Glycine max HOM05D007258 ORTHO05D008852 5.5e-58 228.4 157 69.4
CsaV3_5G038620 Cucumis sativus L. HOM05D007258 ORTHO05D008852 7.2e-58 228.0 162 69.1
Ca_20770_v3 Cicer arietinum L. HOM05D000600 ORTHO05D000432 1.6e-57 226.9 157 70.1
Hund16216 Selenicereus undatus HOM05D007258 ORTHO05D008852 3.6e-57 225.7 173 68.8
GSVIVG01036568001 Vitis vinifera HOM05D007258 ORTHO05D008852 3.6e-57 225.7 169 67.5
MSTRG.15441 Avicennia marina HOM05D007258 ORTHO05D008852 8.0e-57 224.6 155 72.3
Os01g0763000 Oryza sativa ssp. japonica HOM05D007258 ORTHO05D008852 8.0e-57 224.6 176 60.2
Sed0003620 Sechium edule HOM05D007258 ORTHO05D008852 1.4e-56 223.8 178 65.7
FvH4_6g46551 Fragaria vesca HOM05D007258 ORTHO05D008852 1.8e-56 223.4 165 69.1
FAN05G4223 Fragaria x ananassa HOM05D000830 ORTHO05D008852 1.8e-56 223.4 165 69.1
Gohir.A07G181100 Gossypium hirsutum HOM05D007258 ORTHO05D008852 5.2e-56 221.9 193 59.1
FAN02G1393 Fragaria x ananassa HOM05D000830 ORTHO05D008852 6.8e-56 221.5 165 68.5
Aqoxy3G00517 Aquilegia oxysepala HOM05D007258 ORTHO05D008852 3.4e-55 219.2 176 63.1
RcHm_v2.0_Chr2g0165201 Rosa chinensis HOM05D007258 ORTHO05D008852 4.4e-55 218.8 165 67.9
FAN14G1076 Fragaria x ananassa HOM05D000830 ORTHO05D008852 1.3e-54 217.2 175 64.6
Oeu004419.1 Olea europaea HOM05D007258 ORTHO05D008852 2.2e-54 216.5 138 72.5
EL10Ac2g04457 Beta vulgaris HOM05D007258 ORTHO05D008852 4.8e-54 215.3 196 59.7
PSO017G7301 Papaver somniferum HOM05D007258 ORTHO05D008852 5.4e-53 211.8 167 62.3
PSO478G0672 Papaver somniferum HOM05D007258 ORTHO05D008852 5.4e-53 211.8 189 58.2
CDE07G1188 Ceratophyllum demersum HOM05D007258 ORTHO05D008852 1.6e-52 210.3 196 57.7
Eucgr.I02051 Eucalyptus grandis HOM05D007258 ORTHO05D008852 4.5e-52 208.8 195 59.5
SEGI_41097 Sequoiadendron giganteum HOM05D007258 ORTHO05D008852 1.0e-51 207.6 141 71.6
Zm00001eb152360 Zea mays HOM05D007258 ORTHO05D008852 2.5e-50 203.0 136 66.9
Haze_03284 Corylus avellana HOM05D007258 ORTHO05D008852 4.2e-50 202.2 157 65.0
Haze_14398 Corylus avellana HOM05D000041 ORTHO05D000061 3.6e-49 199.1 152 65.8
MD17G1063300 Malus domestica HOM05D007258 ORTHO05D008852 5.7e-47 191.8 113 77.0
TAR374G0815 Trochodendron aralioides HOM05D007258 ORTHO05D008852 1.3e-46 190.7 152 62.5
FAN09G2101 Fragaria x ananassa HOM05D000830 ORTHO05D008852 4.3e-42 175.6 142 66.9
MD09G1072600 Malus domestica HOM05D007258 ORTHO05D008852 6.1e-41 171.8 167 53.9
Pp3c24_10 Physcomitrium patens HOM05D007258 ORTHO05D008852 5.2e-40 168.7 161 53.4
Nitab4.5_0005120g0080 Nicotiana tabacum HOM05D007258 ORTHO05D008852 5.8e-39 165.2 187 52.4
CDE04G0513 Ceratophyllum demersum HOM05D007258 ORTHO05D008852 2.9e-38 162.9 172 54.7
Actinidia17595 Actinidia chinensis HOM05D007258 ORTHO05D008852 5.4e-37 158.7 154 53.2
Atru.BG.153.p Acer truncatum HOM05D007258 ORTHO05D008852 4.7e-33 145.6 84 76.2
CBR_g1012 Chara braunii HOM05D007258 ORTHO05D008852 5.2e-32 142.1 146 47.9
BcaB03g16148 Brassica carinata HOM05D007258 ORTHO05D008852 6.8e-32 141.7 84 79.8
AagrBONN_evm.TU.Sc2ySwM_117.3322 Anthoceros agrestis HOM05D007258 ORTHO05D008852 2.7e-28 129.8 135 46.7
ClCG11G004890 Citrullus lanatus HOM05D007258 ORTHO05D008852 1.2e-25 120.9 67 77.6
BolC1t05917H Brassica oleracea HOM05D007258 ORTHO05D008852 1.1e-21 107.8 92 66.3
SEGI_23358 Sequoiadendron giganteum HOM05D007258 ORTHO05D008852 5.6e-18 95.5 71 69.0
vmacro18138 Vaccinium macrocarpon HOM05D007258 ORTHO05D008852 7.3e-18 95.1 90 58.9
Lsat_1_v5_gn_4_141000 Lactuca sativa HOM05D007258 ORTHO05D008852 1.6e-17 94.0 63 68.3
ATR0037G004 Amborella trichopoda HOM05D007258 ORTHO05D008852 5.8e-15 85.5 51 70.6
Lsat_1_v5_gn_7_113001 Lactuca sativa HOM05D007258 ORTHO05D008852 3.8e-14 82.8 62 64.5
Actinidia26259 Actinidia chinensis HOM05D007258 ORTHO05D008852 7.8e-12 75.1 81 51.9
ATR0037G029 Amborella trichopoda HOM05D007258 ORTHO05D008852 1.0e-11 74.7 91 51.6
MCO01G001 Micromonas commoda HOM05D007258 ORTHO05D008852 1.7e-06 57.4 122 29.5
Migut.I00106 Erythranthe guttata HOM05D007258 ORTHO05D008852 2.2e-06 57.0 40 57.5


User provided reference genes

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