Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g30326 Brassica carinata HOM05D012214 ORTHO05D001736 9.3e-169 597.0 359 100.0
A05p44960 Brassica napus HOM05D012214 ORTHO05D001736 4.3e-142 508.4 361 85.6
BraSC197t45807Z Brassica rapa HOM05D012214 ORTHO05D001736 4.3e-142 508.4 361 85.6
BcaC05g30391 Brassica carinata HOM05D012214 ORTHO05D001736 3.3e-134 482.3 363 85.1
C09p75530 Brassica napus HOM05D012214 ORTHO05D001736 3.3e-134 482.3 363 85.1
BolC5t35106H Brassica oleracea HOM05D012214 ORTHO05D001736 5.7e-134 481.5 363 84.8
Sp3g01190 Schrenkiella parvula HOM05D012214 ORTHO05D001736 1.3e-114 417.2 389 71.2
AT3G02125 Arabidopsis thaliana HOM05D012214 ORTHO05D001736 1.5e-97 360.5 369 61.5
CARHR076090 Cardamine hirsuta HOM05D012214 ORTHO05D001736 2.1e-88 330.1 371 58.0
Thhalv10022338m.g Eutrema salsugineum HOM05D012214 ORTHO05D001736 9.2e-84 314.7 380 57.1
AL3G11360 Arabidopsis lyrata HOM05D012214 ORTHO05D001736 2.3e-79 300.1 313 62.9
Carub.0003s0124 Capsella rubella HOM05D012214 ORTHO05D001736 2.6e-70 270.0 380 51.6
THA.LOC104821167 Tarenaya hassleriana HOM05D012214 ORTHO05D001736 5.9e-14 82.8 282 43.6
Cpa.g.sc14.178 Carica papaya HOM05D003787 ORTHO05D001736 6.5e-13 79.3 308 35.4
THA.LOC104803131 Tarenaya hassleriana HOM05D012214 ORTHO05D001736 8.5e-13 79.0 118 47.5
Haze_14428 Corylus avellana HOM05D003787 ORTHO05D001736 2.1e-11 74.3 217 32.7
Cfa007670 Carpinus fangiana HOM05D003787 ORTHO05D001736 2.7e-11 73.9 287 28.6
Sabra17G0083100 Salix brachista HOM05D003787 ORTHO05D001736 3.6e-11 73.6 84 51.2
Actinidia17586 Actinidia chinensis HOM05D003787 ORTHO05D001736 4.7e-11 73.2 355 29.9
Potri.017G094300 Populus trichocarpa HOM05D003787 ORTHO05D001736 6.1e-11 72.8 73 54.8
Glyma.19G030300 Glycine max HOM05D003787 ORTHO05D001736 1.4e-10 71.6 225 29.3
TWI60G0888 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 1.4e-10 71.6 282 28.4
Migut.H00622 Erythranthe guttata HOM05D003787 ORTHO05D001736 1.8e-10 71.2 213 34.3
Ciclev10012704m.g Citrus clementina HOM05D003787 ORTHO05D001736 3.0e-10 70.5 83 45.8
Phvul.004G037400 Phaseolus vulgaris HOM05D003787 ORTHO05D001736 3.0e-10 70.5 84 51.2
SGA_v2.0_scaffold154G37113 Striga asiatica HOM05D003787 ORTHO05D001736 3.0e-10 70.5 76 52.6
Dinv33830 Davidia involucrata HOM05D003787 ORTHO05D001736 3.9e-10 70.1 73 50.7
Thhalv10015236m.g Eutrema salsugineum HOM05D034527 ORTHO05D031391 3.9e-10 70.1 116 37.9
Glyma.13G056300 Glycine max HOM05D003787 ORTHO05D001736 5.2e-10 69.7 85 48.2
Oeu007068.1 Olea europaea HOM05D003787 ORTHO05D001736 8.8e-10 68.9 74 52.7
Sopen02g033550 Solanum pennellii HOM05D003787 ORTHO05D001736 8.8e-10 68.9 70 57.1
SGA_v2.0_scaffold52G19142 Striga asiatica HOM05D003787 ORTHO05D001736 8.8e-10 68.9 66 57.6
Solyc02g088840.3 Solanum lycopersicum HOM05D003787 ORTHO05D001736 1.1e-09 68.6 219 38.8
VMungo0464G0106 Vigna mungo HOM05D003787 ORTHO05D001736 1.1e-09 68.6 217 31.3
SGA_v2.0_scaffold148G36413 Striga asiatica HOM05D003787 ORTHO05D001736 1.5e-09 68.2 72 52.8
CANSAT64G1049 Cannabis sativa HOM05D003787 ORTHO05D001736 4.4e-09 66.6 41 75.6
Medtr6g015240 Medicago truncatula HOM05D003787 ORTHO05D001736 4.4e-09 66.6 72 47.2
SalBow1G3309 Salvia bowleyana HOM05D003787 ORTHO05D001736 4.4e-09 66.6 61 54.1
SalBow1G5677 Salvia bowleyana HOM05D003787 ORTHO05D001736 4.4e-09 66.6 61 54.1
Rhsim08G0075000 Rhododendron simsii HOM05D003787 ORTHO05D001736 5.7e-09 66.2 45 66.7
Eucgr.I02036 Eucalyptus grandis HOM05D003787 ORTHO05D001736 7.4e-09 65.9 264 30.7
Migut.K01274 Erythranthe guttata HOM05D003787 ORTHO05D001736 9.7e-09 65.5 67 55.2
Thecc.04G095900 Theobroma cacao HOM05D003787 ORTHO05D001736 9.7e-09 65.5 302 31.8
Lj2g0021607 Lotus japonicus HOM05D003787 ORTHO05D001736 1.7e-08 64.7 167 36.5
Peaxi162Scf00166g00047 Petunia axillaris HOM05D003787 ORTHO05D001736 2.2e-08 64.3 132 39.4
MSTRG.23883 Avicennia marina HOM05D003787 ORTHO05D001736 2.8e-08 63.9 43 67.4
Ca_04304_v3 Cicer arietinum L. HOM05D003787 ORTHO05D001736 3.7e-08 63.5 139 32.4
CAN.G497.103 Capsicum annuum HOM05D003787 ORTHO05D001736 4.8e-08 63.2 361 30.5
PGR004G1779 Punica granatum HOM05D003787 ORTHO05D001736 4.8e-08 63.2 62 53.2
Atru.chr8.428 Acer truncatum HOM05D003787 ORTHO05D001736 6.3e-08 62.8 231 28.1
Duzib264G1237 Durio zibethinus HOM05D003787 ORTHO05D001736 6.3e-08 62.8 137 42.3
CSS0001662 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 8.2e-08 62.4 272 29.4
Gorai.007G082600 Gossypium raimondii HOM05D003787 ORTHO05D001736 8.2e-08 62.4 187 33.7
unitig_899.g15099 Utricularia gibba HOM05D003787 ORTHO05D001736 8.2e-08 62.4 96 42.7
Nitab4.5_0001637g0040 Nicotiana tabacum HOM05D003787 ORTHO05D001736 1.1e-07 62.0 223 30.0
Cc07_g04250 Coffea canephora HOM05D003787 ORTHO05D001736 1.4e-07 61.6 224 29.9
Lju41C3T13 Lonicera japonica HOM05D003787 ORTHO05D001736 1.4e-07 61.6 101 40.6
Lalb_Chr02g0158901 Lupinus albus HOM05D003787 ORTHO05D001736 1.4e-07 61.6 82 51.2
Carub.0007s3672 Capsella rubella HOM05D011849 ORTHO05D001736 1.8e-07 61.2 62 53.2
Dinv16736 Davidia involucrata HOM05D003787 ORTHO05D001736 1.8e-07 61.2 78 48.7
MD17G1059900 Malus domestica HOM05D003787 ORTHO05D001736 2.4e-07 60.8 226 42.5
Nitab4.5_0003841g0060 Nicotiana tabacum HOM05D003787 ORTHO05D001736 2.4e-07 60.8 181 34.8
CiPaw.03G088400 Carya illinoinensis HOM05D003787 ORTHO05D001736 3.1e-07 60.5 301 27.2
SalBow1G2532 Salvia bowleyana HOM05D003787 ORTHO05D001736 4.1e-07 60.1 74 48.6
FvH4_6g46831 Fragaria vesca HOM05D003787 ORTHO05D001736 5.3e-07 59.7 41 65.9
Nitab4.5_0007320g0010 Nicotiana tabacum HOM05D003787 ORTHO05D001736 5.3e-07 59.7 312 28.8
Prupe.3G254700 Prunus persica HOM05D003787 ORTHO05D001736 5.3e-07 59.7 311 39.2
Duzib187G0666 Durio zibethinus HOM05D003787 ORTHO05D001736 7.0e-07 59.3 187 31.6
Migut.L01187 Erythranthe guttata HOM05D003787 ORTHO05D001736 7.0e-07 59.3 58 58.6
Gohir.D11G076900 Gossypium hirsutum HOM05D003787 ORTHO05D001736 7.0e-07 59.3 117 38.5
Rhsim10G0049700 Rhododendron simsii HOM05D003787 ORTHO05D001736 7.0e-07 59.3 272 26.1
TPR.G10000 Trifolium pratense HOM05D003787 ORTHO05D001736 7.0e-07 59.3 136 37.5
TWI31G1463 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 7.0e-07 59.3 54 61.1
CARHR263210 Cardamine hirsuta HOM05D011849 ORTHO05D001736 9.1e-07 58.9 223 29.1
CsaV3_5G038510 Cucumis sativus L. HOM05D003787 ORTHO05D001736 9.1e-07 58.9 183 32.2
arahy.Tifrunner.gnm1.ann1.1H4V42 Arachis hypogaea HOM05D003787 ORTHO05D001736 1.2e-06 58.5 69 53.6
MELO3C022033.2 Cucumis melo HOM05D003787 ORTHO05D001736 1.2e-06 58.5 184 35.3
Gohir.A11G072600 Gossypium hirsutum HOM05D003787 ORTHO05D001736 1.2e-06 58.5 187 32.6
Hma1.2p1_0566F.1_g179820 Hydrangea macrophylla HOM05D003787 ORTHO05D001736 1.2e-06 58.5 91 42.9
Peaxi162Scf00667g00065 Petunia axillaris HOM05D011975 ORTHO05D001736 1.2e-06 58.5 152 37.5
Potri.004G120400 Populus trichocarpa HOM05D003787 ORTHO05D001736 1.2e-06 58.5 152 34.2
Lsat_1_v5_gn_2_90140 Lactuca sativa HOM05D003787 ORTHO05D001736 1.6e-06 58.2 50 60.0
MD09G1067000 Malus domestica HOM05D003787 ORTHO05D001736 1.6e-06 58.2 110 40.0
Sed0011679 Sechium edule HOM05D003787 ORTHO05D001736 1.6e-06 58.2 113 42.5
arahy.Tifrunner.gnm1.ann1.MG99FN Arachis hypogaea HOM05D003787 ORTHO05D001736 2.0e-06 57.8 48 62.5
arahy.Tifrunner.gnm1.ann1.NP9FW8 Arachis hypogaea HOM05D003787 ORTHO05D001736 2.0e-06 57.8 48 62.5
Sabra04G0069600 Salix brachista HOM05D003787 ORTHO05D001736 2.0e-06 57.8 110 39.1
PGSC0003DMG400012377 Solanum tuberosum HOM05D003787 ORTHO05D001736 2.0e-06 57.8 386 27.7
TWI79G0236 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 2.0e-06 57.8 42 71.4
PGSC0003DMG400001359 Solanum tuberosum HOM05D003787 ORTHO05D001736 2.6e-06 57.4 307 33.2
Lalb_Chr06g0174951 Lupinus albus HOM05D003787 ORTHO05D001736 4.5e-06 56.6 127 38.6
Psat1g068800 Pisum sativum HOM05D003787 ORTHO05D001736 4.5e-06 56.6 116 37.9
PGR119G1736 Punica granatum HOM05D003787 ORTHO05D001736 4.5e-06 56.6 164 36.0
Sp7g02800 Schrenkiella parvula HOM05D011849 ORTHO05D001736 5.9e-06 56.2 208 28.4
Rhsim09G0127000 Rhododendron simsii HOM05D003787 ORTHO05D001736 7.7e-06 55.8 100 40.0
TWI75G0087 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 7.7e-06 55.8 65 52.3


User provided reference genes

Program Settings