Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g30307 Brassica carinata HOM05D004822 ORTHO05D005632 4.1e-150 534.6 263 100.0
BcaC05g29876 Brassica carinata HOM05D018205 ORTHO05D021387 8.9e-36 154.8 232 44.0
C05p63530 Brassica napus HOM05D018205 ORTHO05D021387 4.4e-35 152.5 232 43.5
BolC5t35048H Brassica oleracea HOM05D004822 ORTHO05D005632 1.9e-33 147.1 88 84.1
A05p44150 Brassica napus HOM05D004822 ORTHO05D005632 1.6e-32 144.1 88 81.8
BraSC90t46695Z Brassica rapa HOM05D004822 ORTHO05D005632 1.6e-32 144.1 88 81.8
A05p43900 Brassica napus HOM05D001012 ORTHO05D002597 3.0e-31 139.8 93 76.3
BraA05t23127Z Brassica rapa HOM05D001012 ORTHO05D002597 3.0e-31 139.8 93 76.3
Sp3g02040 Schrenkiella parvula HOM05D004822 ORTHO05D005632 3.3e-30 136.3 88 78.4
AL3G12900 Arabidopsis lyrata HOM05D018205 ORTHO05D021387 2.1e-29 133.7 228 37.7
Carub.0003s0211 Capsella rubella HOM05D004822 ORTHO05D005632 4.7e-29 132.5 88 77.3
AT3G02980 Arabidopsis thaliana HOM05D004822 ORTHO05D005632 6.9e-28 128.6 88 75.0
Aa31LG5G13470 Aethionema arabicum HOM05D004822 ORTHO05D005632 2.4e-25 120.2 83 69.9
BcaC04g18846 Brassica carinata HOM05D004822 ORTHO05D005632 2.4e-25 120.2 86 68.6
A10p22430 Brassica napus HOM05D004822 ORTHO05D005632 2.4e-25 120.2 86 67.4
AL6G27820 Arabidopsis lyrata HOM05D004822 ORTHO05D005632 3.2e-25 119.8 87 66.7
Sp6g27330 Schrenkiella parvula HOM05D004822 ORTHO05D005632 3.2e-25 119.8 87 67.8
AT5G16800 Arabidopsis thaliana HOM05D004822 ORTHO05D005632 4.2e-25 119.4 87 65.5
BcaB01g04968 Brassica carinata HOM05D004822 ORTHO05D005632 7.1e-25 118.6 75 73.3
A03p07960 Brassica napus HOM05D004822 ORTHO05D005632 7.1e-25 118.6 75 73.3
C03p09170 Brassica napus HOM05D004822 ORTHO05D005632 7.1e-25 118.6 75 73.3
BraA03t10121Z Brassica rapa HOM05D004822 ORTHO05D005632 7.1e-25 118.6 75 73.3
BcaC04g18845 Brassica carinata HOM05D004822 ORTHO05D005632 9.3e-25 118.2 86 67.4
C09p60280 Brassica napus HOM05D004822 ORTHO05D005632 9.3e-25 118.2 86 67.4
Thhalv10014541m.g Eutrema salsugineum HOM05D004822 ORTHO05D005632 9.3e-25 118.2 75 73.3
Carub.0006s1502 Capsella rubella HOM05D004822 ORTHO05D005632 1.2e-24 117.9 86 66.3
CARHR196360 Cardamine hirsuta HOM05D004822 ORTHO05D005632 1.2e-24 117.9 86 66.3
BcaB01g05242 Brassica carinata HOM05D004822 ORTHO05D005632 2.1e-24 117.1 75 72.0
BolC3t13414H Brassica oleracea HOM05D004822 ORTHO05D005632 2.1e-24 117.1 75 72.0
THA.LOC104820895 Tarenaya hassleriana HOM05D004822 ORTHO05D005632 3.5e-24 116.3 87 65.5
THA.LOC104827203 Tarenaya hassleriana HOM05D004822 ORTHO05D005632 6.0e-24 115.5 75 72.0
Aa31LG11G12780 Aethionema arabicum HOM05D004822 ORTHO05D005632 1.0e-23 114.8 75 73.3
PGR042G2086 Punica granatum HOM05D004822 ORTHO05D005632 1.5e-22 110.9 75 66.7
TWI18G0151 Tripterygium wilfordii HOM05D004822 ORTHO05D005632 1.5e-22 110.9 75 66.7
Duzib177G1199 Durio zibethinus HOM05D004822 ORTHO05D005632 4.3e-22 109.4 75 65.3
TWI12G0583 Tripterygium wilfordii HOM05D004822 ORTHO05D005632 4.3e-22 109.4 87 57.5
Ciclev10021817m.g Citrus clementina HOM05D004822 ORTHO05D005632 7.3e-22 108.6 75 66.7
AL3G12440 Arabidopsis lyrata HOM05D004822 ORTHO05D005632 1.3e-21 107.8 76 72.4
QL09p023219 Quercus lobata HOM05D004822 ORTHO05D005632 1.3e-21 107.8 75 64.0
Glyma.11G009600 Glycine max HOM05D004822 ORTHO05D005632 1.6e-21 107.5 75 64.0
Phvul.002G040700 Phaseolus vulgaris HOM05D004822 ORTHO05D005632 1.6e-21 107.5 75 64.0
Glyma.01G233200 Glycine max HOM05D004822 ORTHO05D005632 2.1e-21 107.1 77 62.3
Rhsim03G0222800 Rhododendron simsii HOM05D004822 ORTHO05D005632 2.1e-21 107.1 75 64.0
Potri.013G079900 Populus trichocarpa HOM05D004822 ORTHO05D005632 2.8e-21 106.7 75 64.0
arahy.Tifrunner.gnm1.ann1.UL380H Arachis hypogaea HOM05D004822 ORTHO05D005632 3.6e-21 106.3 75 62.7
Gohir.D08G241600 Gossypium hirsutum HOM05D004822 ORTHO05D005632 3.6e-21 106.3 75 61.3
Gorai.004G256900 Gossypium raimondii HOM05D004822 ORTHO05D005632 3.6e-21 106.3 75 61.3
Cfa016047 Carpinus fangiana HOM05D004822 ORTHO05D005632 4.8e-21 105.9 75 61.3
COL.COLO4_15238 Corchorus olitorius HOM05D004822 ORTHO05D005632 4.8e-21 105.9 75 62.7
CiPaw.06G034300 Carya illinoinensis HOM05D004822 ORTHO05D005632 6.2e-21 105.5 75 61.3
SGA_v2.0_scaffold44G16902 Striga asiatica HOM05D004822 ORTHO05D005632 6.2e-21 105.5 75 61.3
vmacro06525 Vaccinium macrocarpon HOM05D004822 ORTHO05D005632 6.2e-21 105.5 75 64.0
Actinidia08752 Actinidia chinensis HOM05D004822 ORTHO05D005632 8.1e-21 105.1 75 62.7
arahy.Tifrunner.gnm1.ann1.TC8PXF Arachis hypogaea HOM05D004822 ORTHO05D005632 8.1e-21 105.1 75 61.3
Prupe.2G327400 Prunus persica HOM05D004822 ORTHO05D005632 8.1e-21 105.1 87 57.5
RcHm_v2.0_Chr1g0384361 Rosa chinensis HOM05D004822 ORTHO05D005632 8.1e-21 105.1 75 62.7
Thecc.05G215800 Theobroma cacao HOM05D004822 ORTHO05D005632 8.1e-21 105.1 75 61.3
Haze_00399 Corylus avellana HOM05D004822 ORTHO05D005632 1.1e-20 104.8 75 61.3
Duzib106G0609 Durio zibethinus HOM05D004822 ORTHO05D005632 1.1e-20 104.8 77 59.7
Gohir.A08G221666 Gossypium hirsutum HOM05D004822 ORTHO05D005632 1.1e-20 104.8 75 61.3
C05p63790 Brassica napus HOM05D000387 ORTHO05D005632 1.4e-20 104.4 67 74.6
DCAR_010536 Daucus carota HOM05D004822 ORTHO05D005632 1.4e-20 104.4 86 51.2
DCAR_020414 Daucus carota HOM05D004822 ORTHO05D005632 1.4e-20 104.4 77 59.7
Sabra13G0073000 Salix brachista HOM05D004822 ORTHO05D005632 1.4e-20 104.4 75 62.7
SalBow4G2092 Salvia bowleyana HOM05D004822 ORTHO05D005632 1.4e-20 104.4 75 64.0
SalBow4G3298 Salvia bowleyana HOM05D004822 ORTHO05D005632 1.4e-20 104.4 75 64.0
PGSC0003DMG400003148 Solanum tuberosum HOM05D004822 ORTHO05D005632 1.4e-20 104.4 73 61.6
GSVIVG01024375001 Vitis vinifera HOM05D004822 ORTHO05D005632 1.4e-20 104.4 75 60.0
FvH4_7g34080 Fragaria vesca HOM05D004822 ORTHO05D005632 1.8e-20 104.0 77 61.0
Atru.chr12.1891 Acer truncatum HOM05D004822 ORTHO05D005632 2.4e-20 103.6 75 61.3
Peaxi162Scf00516g00674 Petunia axillaris HOM05D004822 ORTHO05D005632 2.4e-20 103.6 75 62.7
Solyc03g097140.3 Solanum lycopersicum HOM05D004822 ORTHO05D005632 2.4e-20 103.6 75 61.3
Dinv29145 Davidia involucrata HOM05D004822 ORTHO05D005632 3.1e-20 103.2 75 60.0
Sopen03g027880 Solanum pennellii HOM05D004822 ORTHO05D005632 3.1e-20 103.2 73 61.6
CSS0024551 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 4.0e-20 102.8 75 58.7
CSS0024699 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 4.0e-20 102.8 75 58.7
CANSAT56G1711 Cannabis sativa HOM05D004822 ORTHO05D005632 5.3e-20 102.4 75 61.3
Eucgr.K00079 Eucalyptus grandis HOM05D004822 ORTHO05D005632 5.3e-20 102.4 75 61.3
MD07G1309700 Malus domestica HOM05D004822 ORTHO05D005632 5.3e-20 102.4 75 61.3
Sc25g0001230 Simmondsia chinensis HOM05D004822 ORTHO05D005632 5.3e-20 102.4 75 60.0
Ah.04g156230 Amaranthus hybridus HOM05D004822 ORTHO05D005632 6.9e-20 102.1 75 61.3
ATR0829G204 Amborella trichopoda HOM05D004822 ORTHO05D005632 6.9e-20 102.1 75 57.3
AUR62002079 Chenopodium quinoa HOM05D004822 ORTHO05D005632 6.9e-20 102.1 75 62.7
AUR62028196 Chenopodium quinoa HOM05D004822 ORTHO05D005632 6.9e-20 102.1 75 62.7
MD01G1237100 Malus domestica HOM05D004822 ORTHO05D005632 6.9e-20 102.1 75 61.3
Manes.09G127500 Manihot esculenta HOM05D004822 ORTHO05D005632 6.9e-20 102.1 75 60.0
Cc02_g00190 Coffea canephora HOM05D004822 ORTHO05D005632 9.0e-20 101.7 75 58.7
Lalb_Chr01g0000881 Lupinus albus HOM05D004822 ORTHO05D005632 9.0e-20 101.7 75 60.0
Nitab4.5_0000021g0700 Nicotiana tabacum HOM05D004822 ORTHO05D005632 9.0e-20 101.7 75 61.3
Nitab4.5_0000150g0020 Nicotiana tabacum HOM05D004822 ORTHO05D005632 9.0e-20 101.7 73 60.3
Nitab4.5_0004530g0010 Nicotiana tabacum HOM05D004822 ORTHO05D005632 1.2e-19 101.3 75 60.0
Potri.019G050700 Populus trichocarpa HOM05D004822 ORTHO05D005632 1.2e-19 101.3 75 61.3
TPR.G37975 Trifolium pratense HOM05D004822 ORTHO05D005632 1.2e-19 101.3 75 61.3
LjContig00222g0020254 Lotus japonicus HOM05D004822 ORTHO05D005632 1.5e-19 100.9 75 61.3
Lalb_Chr19g0140001 Lupinus albus HOM05D004822 ORTHO05D005632 1.5e-19 100.9 75 58.7
BolC9t58861H Brassica oleracea HOM05D004822 ORTHO05D005632 2.0e-19 100.5 89 59.6
BraA10t44302Z Brassica rapa HOM05D004822 ORTHO05D005632 2.0e-19 100.5 65 70.8
CiPaw.05G216100 Carya illinoinensis HOM05D004822 ORTHO05D005632 2.0e-19 100.5 75 60.0
ClCG09G016920 Citrullus lanatus HOM05D004822 ORTHO05D005632 2.0e-19 100.5 75 57.3
Hma1.2p1_0649F.1_g195250 Hydrangea macrophylla HOM05D004822 ORTHO05D005632 2.0e-19 100.5 75 60.0
EL10Ac3g05059 Beta vulgaris HOM05D004822 ORTHO05D005632 2.6e-19 100.1 75 61.3
MELO3C021888.2 Cucumis melo HOM05D004822 ORTHO05D005632 2.6e-19 100.1 75 57.3
CsaV3_2G036410 Cucumis sativus L. HOM05D004822 ORTHO05D005632 2.6e-19 100.1 75 57.3
Nitab4.5_0001108g0050 Nicotiana tabacum HOM05D004822 ORTHO05D005632 2.6e-19 100.1 73 60.3
Sed0007243 Sechium edule HOM05D004822 ORTHO05D005632 2.6e-19 100.1 75 56.0
HPP92_014856 Vanilla planifolia HOM05D004822 ORTHO05D005632 2.6e-19 100.1 73 61.6
Peaxi162Scf00133g00611 Petunia axillaris HOM05D004822 ORTHO05D005632 3.4e-19 99.8 73 57.5
MSTRG.26924 Avicennia marina HOM05D004822 ORTHO05D005632 4.5e-19 99.4 74 59.5
Lj3A886T38 Lonicera japonica HOM05D004822 ORTHO05D005632 4.5e-19 99.4 75 58.7
Hund09803 Selenicereus undatus HOM05D004822 ORTHO05D005632 4.5e-19 99.4 75 61.3
Zm00001eb251310 Zea mays HOM05D004822 ORTHO05D005632 4.5e-19 99.4 75 57.3
ECA232G1387 Erigeron canadensis HOM05D004822 ORTHO05D005632 5.8e-19 99.0 75 60.0
HanXRQChr08g0231351 Helianthus annuus HOM05D004822 ORTHO05D005632 7.6e-19 98.6 75 60.0
Psat2g189120 Pisum sativum HOM05D004822 ORTHO05D005632 7.6e-19 98.6 75 58.7
TAR362G0773 Trochodendron aralioides HOM05D004822 ORTHO05D005632 9.9e-19 98.2 75 60.0
Aqoxy3G02240 Aquilegia oxysepala HOM05D004822 ORTHO05D005632 1.3e-18 97.8 75 60.0
Medtr5g007400 Medicago truncatula HOM05D004822 ORTHO05D005632 1.3e-18 97.8 75 57.3
Nn1g00175 Nelumbo nucifera HOM05D004822 ORTHO05D005632 1.3e-18 97.8 78 57.7
Rhsim09G0213500 Rhododendron simsii HOM05D004822 ORTHO05D005632 1.7e-18 97.4 76 55.3
Dinv17249 Davidia involucrata HOM05D004822 ORTHO05D005632 2.2e-18 97.1 74 58.1
CAN.G1131.24 Capsicum annuum HOM05D004822 ORTHO05D005632 2.9e-18 96.7 74 58.1
Migut.F00086 Erythranthe guttata HOM05D004822 ORTHO05D005632 2.9e-18 96.7 75 57.3
HanXRQChr16g0512131 Helianthus annuus HOM05D004822 ORTHO05D005632 2.9e-18 96.7 75 60.0
unitig_747.g21929 Utricularia gibba HOM05D004822 ORTHO05D005632 2.9e-18 96.7 73 57.5
Oeu007515.1 Olea europaea HOM05D004822 ORTHO05D005632 3.8e-18 96.3 75 54.7
Duzib128G1067 Durio zibethinus HOM05D004822 ORTHO05D005632 1.1e-17 94.7 75 56.0
Eucgr.H04873 Eucalyptus grandis HOM05D004822 ORTHO05D005632 1.1e-17 94.7 73 57.5
SHI29591 Sapria himalayana HOM05D004822 ORTHO05D005632 1.9e-17 94.0 77 50.6
Pp3c21_19030 Physcomitrium patens HOM05D004822 ORTHO05D005632 3.2e-17 93.2 75 54.7
Pp3c19_16350 Physcomitrium patens HOM05D004822 ORTHO05D005632 4.2e-17 92.8 75 54.7
arahy.Tifrunner.gnm1.ann1.IXL9K3 Arachis hypogaea HOM05D004822 ORTHO05D005632 9.3e-17 91.7 67 59.7
Os02g0694201 Oryza sativa ssp. japonica HOM05D004822 ORTHO05D005632 9.3e-17 91.7 66 59.1
CSS0013609 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 1.2e-16 91.3 75 56.0
CDE06G0869 Ceratophyllum demersum HOM05D000380 ORTHO05D000561 1.2e-16 91.3 78 55.1
SMO146G0253 Selaginella moellendorffii HOM05D004822 ORTHO05D005632 2.7e-16 90.1 75 53.3
CSS0045344 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 3.5e-16 89.7 75 54.7
Lj3g0022054 Lotus japonicus HOM05D004822 ORTHO05D005632 6.0e-16 89.0 75 57.3
Mapoly0133s0015 Marchantia polymorpha HOM05D004822 ORTHO05D005632 3.0e-15 86.7 75 49.3
SEGI_16512 Sequoiadendron giganteum HOM05D004822 ORTHO05D005632 5.1e-15 85.9 75 50.7
arahy.Tifrunner.gnm1.ann1.YEB8JM Arachis hypogaea HOM05D004822 ORTHO05D005632 1.9e-14 84.0 65 56.9
TAR374G1016 Trochodendron aralioides HOM05D004822 ORTHO05D005632 5.3e-12 75.9 75 49.3
SHI02573 Sapria himalayana HOM05D004822 ORTHO05D005632 4.5e-11 72.8 61 45.9
arahy.Tifrunner.gnm1.ann1.KDM1H7 Arachis hypogaea HOM05D004822 ORTHO05D005632 7.6e-11 72.0 68 50.0
arahy.Tifrunner.gnm1.ann1.U456D3 Arachis hypogaea HOM05D004822 ORTHO05D005632 1.7e-10 70.9 68 48.5
PGR142G2504 Punica granatum HOM05D004822 ORTHO05D005632 4.2e-09 66.2 63 49.2
Sed0002247 Sechium edule HOM05D004822 ORTHO05D005632 6.7e-07 58.9 43 53.5
Gohir.D13G099300 Gossypium hirsutum HOM05D004822 ORTHO05D005632 5.6e-06 55.8 48 52.1
Gorai.013G103600 Gossypium raimondii HOM05D004822 ORTHO05D005632 5.6e-06 55.8 48 52.1


User provided reference genes

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