Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g30288 Brassica carinata HOM05D003715 ORTHO05D003958 2.1e-100 369.0 184 100.0
BcaC05g30247 Brassica carinata HOM05D003715 ORTHO05D003958 1.7e-94 349.4 224 82.1
A05p43520 Brassica napus HOM05D003715 ORTHO05D003958 3.6e-84 315.1 224 74.1
BraA05t23092Z Brassica rapa HOM05D003715 ORTHO05D003958 3.4e-82 308.5 220 73.6
BcaC05g29901 Brassica carinata HOM05D003715 ORTHO05D003958 7.5e-82 307.4 221 73.8
BolC5t34973H Brassica oleracea HOM05D003715 ORTHO05D003958 7.5e-82 307.4 221 73.8
BcaNung05741 Brassica carinata HOM05D003715 ORTHO05D003958 6.8e-75 284.3 224 67.9
Thhalv10021350m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 9.9e-74 280.4 233 65.2
Sp3g02840 Schrenkiella parvula HOM05D003715 ORTHO05D003958 1.2e-68 263.5 233 63.5
BolC1t05801H Brassica oleracea HOM05D003715 ORTHO05D003958 2.0e-66 256.1 221 64.7
AT3G03870 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 5.8e-66 254.6 238 60.1
AL3G13760 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 2.2e-65 252.7 234 60.7
CARHR077990 Cardamine hirsuta HOM05D003715 ORTHO05D003958 6.4e-65 251.1 231 62.3
Carub.0003s0306 Capsella rubella HOM05D003715 ORTHO05D003958 1.4e-59 233.4 240 57.1
Thhalv10014292m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 4.9e-49 198.4 238 50.4
Carub.0006s1642 Capsella rubella HOM05D003715 ORTHO05D003958 7.1e-48 194.5 205 55.6
Sp6g26180 Schrenkiella parvula HOM05D003715 ORTHO05D003958 9.3e-48 194.1 235 49.8
AL6G29330 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 4.6e-47 191.8 220 51.8
AT5G18130 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 3.3e-45 185.7 219 51.6
BraA10t44200Z Brassica rapa HOM05D003715 ORTHO05D003958 1.6e-44 183.3 234 48.7
A10p21370 Brassica napus HOM05D003715 ORTHO05D003958 2.1e-44 183.0 234 48.7
CARHR194940 Cardamine hirsuta HOM05D003715 ORTHO05D003958 2.1e-44 183.0 215 51.2
C09p58840 Brassica napus HOM05D003715 ORTHO05D003958 2.8e-44 182.6 235 48.5
A02p04750 Brassica napus HOM05D003715 ORTHO05D003958 3.7e-44 182.2 231 47.2
BolC9t58728H Brassica oleracea HOM05D003715 ORTHO05D003958 3.7e-44 182.2 236 48.3
A03p08670 Brassica napus HOM05D003715 ORTHO05D003958 1.8e-43 179.9 215 51.2
BolC2t06880H Brassica oleracea HOM05D003715 ORTHO05D003958 4.0e-43 178.7 231 46.8
BraA02t05434Z Brassica rapa HOM05D003715 ORTHO05D003958 6.9e-43 177.9 228 46.5
C02p09710 Brassica napus HOM05D003715 ORTHO05D003958 9.0e-43 177.6 231 46.3
BcaB01g06399 Brassica carinata HOM05D003715 ORTHO05D003958 4.5e-42 175.3 213 48.8
Aa31LG5G14450 Aethionema arabicum HOM05D003715 ORTHO05D003958 2.2e-41 172.9 210 51.0
BcaB05g23302 Brassica carinata HOM05D003715 ORTHO05D003958 2.2e-41 172.9 232 45.7
BcaC03g13579 Brassica carinata HOM05D003715 ORTHO05D003958 2.9e-41 172.6 231 45.0
BcaB01g05177 Brassica carinata HOM05D003715 ORTHO05D003958 3.8e-41 172.2 220 47.7
C03p10110 Brassica napus HOM05D003715 ORTHO05D003958 3.8e-41 172.2 220 47.7
BolC3t13497H Brassica oleracea HOM05D003715 ORTHO05D003958 3.8e-41 172.2 220 47.7
BraA03t10190Z Brassica rapa HOM05D003715 ORTHO05D003958 3.8e-41 172.2 220 47.7
THA.LOC104820776 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 8.2e-36 154.5 225 44.9
BcaB08g36703 Brassica carinata HOM05D003715 ORTHO05D003958 1.3e-33 147.1 233 41.2
Aa31LG11G11470 Aethionema arabicum HOM05D003715 ORTHO05D003958 2.2e-33 146.4 202 45.5
THA.LOC104827275 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 1.1e-24 117.5 211 40.8
Manes.09G140500 Manihot esculenta HOM05D003715 ORTHO05D003958 9.4e-24 114.4 235 37.4
Solyc10g078590.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 3.0e-22 109.4 209 40.2
THA.LOC104802870 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 6.7e-22 108.2 214 37.4
Manes.08G145000 Manihot esculenta HOM05D003715 ORTHO05D003958 8.8e-22 107.8 239 36.4
Sopen10g029220 Solanum pennellii HOM05D003715 ORTHO05D003958 8.8e-22 107.8 208 38.5
Nitab4.5_0002769g0040 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.1e-21 107.5 88 63.6
PGSC0003DMG400008354 Solanum tuberosum HOM05D003715 ORTHO05D003958 1.5e-21 107.1 149 44.3
COL.COLO4_36085 Corchorus olitorius HOM05D003715 ORTHO05D003958 2.0e-21 106.7 89 61.8
QL07p018445 Quercus lobata HOM05D003715 ORTHO05D003958 3.3e-21 105.9 87 60.9
Dinv37021 Davidia involucrata HOM05D003715 ORTHO05D003958 2.8e-20 102.8 86 60.5
Lalb_Chr02g0157161 Lupinus albus HOM05D003715 ORTHO05D003958 3.7e-20 102.4 218 36.2
Peaxi162Scf00003g04827 Petunia axillaris HOM05D003715 ORTHO05D003958 4.8e-20 102.1 147 44.9
Sabra19G0044200 Salix brachista HOM05D003715 ORTHO05D003958 4.8e-20 102.1 170 38.8
Sabra19G0047500 Salix brachista HOM05D003715 ORTHO05D003958 4.8e-20 102.1 170 38.8
TWI32G0411 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 8.2e-20 101.3 88 56.8
Cfa001533 Carpinus fangiana HOM05D003715 ORTHO05D003958 1.1e-19 100.9 88 59.1
Potri.019G035600 Populus trichocarpa HOM05D003715 ORTHO05D003958 1.1e-19 100.9 129 41.9
PGR142G1981 Punica granatum HOM05D003715 ORTHO05D003958 1.1e-19 100.9 89 60.7
Glyma.16G153700 Glycine max HOM05D003715 ORTHO05D003958 1.4e-19 100.5 88 61.4
Nitab4.5_0000658g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.4e-19 100.5 88 59.1
VMungo0464G1653 Vigna mungo HOM05D003715 ORTHO05D003958 1.8e-19 100.1 246 35.4
Gorai.007G262000 Gossypium raimondii HOM05D003715 ORTHO05D003958 2.4e-19 99.8 143 43.4
Glyma.02G072500 Glycine max HOM05D003715 ORTHO05D003958 4.1e-19 99.0 88 60.2
TPR.G5870 Trifolium pratense HOM05D003715 ORTHO05D003958 5.3e-19 98.6 237 35.0
TWI34G1349 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 5.3e-19 98.6 88 56.8
Haze_19430 Corylus avellana HOM05D003715 ORTHO05D003958 6.9e-19 98.2 92 55.4
Hma1.2p1_0152F.1_g067600 Hydrangea macrophylla HOM05D003715 ORTHO05D003958 6.9e-19 98.2 89 59.6
CANSAT78G1806 Cannabis sativa HOM05D003715 ORTHO05D003958 9.1e-19 97.8 90 53.3
Ca_04486_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 9.1e-19 97.8 203 36.9
Eucgr.A02102 Eucalyptus grandis HOM05D003715 ORTHO05D003958 1.2e-18 97.4 88 58.0
Peaxi162Scf00463g00019 Petunia axillaris HOM05D003715 ORTHO05D003958 1.2e-18 97.4 85 55.3
Actinidia30549 Actinidia chinensis HOM05D003715 ORTHO05D003958 1.5e-18 97.1 90 58.9
Gohir.A11G235300 Gossypium hirsutum HOM05D003715 ORTHO05D003958 3.4e-18 95.9 146 43.2
Ciclev10021362m.g Citrus clementina HOM05D003715 ORTHO05D003958 4.5e-18 95.5 90 57.8
CiPaw.10G001300 Carya illinoinensis HOM05D003715 ORTHO05D003958 5.9e-18 95.1 88 54.5
Phvul.004G080700 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 5.9e-18 95.1 88 58.0
Thecc.05G249800 Theobroma cacao HOM05D003715 ORTHO05D003958 5.9e-18 95.1 88 56.8
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 7.7e-18 94.7 248 32.3
PSO781G0019 Papaver somniferum HOM05D003715 ORTHO05D003958 1.0e-17 94.4 88 52.3
Eucgr.K01502 Eucalyptus grandis HOM05D003715 ORTHO05D003958 1.3e-17 94.0 92 62.0
Ca_08274_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 1.7e-17 93.6 227 33.5
Medtr7g085790 Medicago truncatula HOM05D003715 ORTHO05D003958 1.7e-17 93.6 237 30.8
Dinv14575 Davidia involucrata HOM05D003715 ORTHO05D003958 2.2e-17 93.2 88 54.5
Gohir.D11G246200 Gossypium hirsutum HOM05D003715 ORTHO05D003958 2.2e-17 93.2 143 41.3
arahy.Tifrunner.gnm1.ann1.V3MY1S Arachis hypogaea HOM05D003715 ORTHO05D003958 2.9e-17 92.8 88 54.5
Phvul.001G111500 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 2.9e-17 92.8 89 59.6
Prupe.7G006100 Prunus persica HOM05D003715 ORTHO05D003958 2.9e-17 92.8 238 33.6
Duzib106G1922 Durio zibethinus HOM05D003715 ORTHO05D003958 3.8e-17 92.4 88 56.8
Glyma.19G112800 Glycine max HOM05D003715 ORTHO05D003958 3.8e-17 92.4 88 58.0
Lj1g0002462 Lotus japonicus HOM05D003715 ORTHO05D003958 3.8e-17 92.4 177 40.7
Medtr6g029250 Medicago truncatula HOM05D003715 ORTHO05D003958 5.0e-17 92.0 210 34.8
Psat3g088760 Pisum sativum HOM05D003715 ORTHO05D003958 5.0e-17 92.0 231 33.3
Potri.013G057200 Populus trichocarpa HOM05D003715 ORTHO05D003958 5.0e-17 92.0 90 52.2
PGR042G0616 Punica granatum HOM05D003715 ORTHO05D003958 5.0e-17 92.0 88 58.0
MD14G1003600 Malus domestica HOM05D003715 ORTHO05D003958 8.5e-17 91.3 224 32.6
Actinidia22080 Actinidia chinensis HOM05D003715 ORTHO05D003958 1.1e-16 90.9 90 55.6
ClCG04G005350 Citrullus lanatus HOM05D003715 ORTHO05D003958 1.1e-16 90.9 88 56.8
Cc06_g23060 Coffea canephora HOM05D003715 ORTHO05D003958 1.1e-16 90.9 96 55.2
Nn2g12054 Nelumbo nucifera HOM05D003715 ORTHO05D003958 1.1e-16 90.9 88 51.1
TPR.G9142 Trifolium pratense HOM05D003715 ORTHO05D003958 1.1e-16 90.9 166 38.6
Atru.chr2.1400 Acer truncatum HOM05D003715 ORTHO05D003958 1.4e-16 90.5 88 54.5
Psat1g091040 Pisum sativum HOM05D003715 ORTHO05D003958 1.4e-16 90.5 199 35.2
RcHm_v2.0_Chr3g0497011 Rosa chinensis HOM05D003715 ORTHO05D003958 1.4e-16 90.5 116 46.6
Glyma.16G040300 Glycine max HOM05D003715 ORTHO05D003958 1.9e-16 90.1 88 56.8
MBI01_g25640_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.9e-16 90.1 251 31.9
Nitab4.5_0000358g0150 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.9e-16 90.1 89 56.2
CsaV3_4G013240 Cucumis sativus L. HOM05D003715 ORTHO05D003958 2.5e-16 89.7 88 55.7
Lj1g0012553 Lotus japonicus HOM05D003715 ORTHO05D003958 3.2e-16 89.4 91 52.7
Lalb_Chr22g0359081 Lupinus albus HOM05D003715 ORTHO05D003958 3.2e-16 89.4 91 58.2
Aqoxy2G00514 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 5.5e-16 88.6 90 52.2
MSTRG.26069 Avicennia marina HOM05D003715 ORTHO05D003958 5.5e-16 88.6 218 32.1
DCAR_019875 Daucus carota HOM05D003715 ORTHO05D003958 7.2e-16 88.2 213 30.5
Sc13g0002630 Simmondsia chinensis HOM05D003715 ORTHO05D003958 7.2e-16 88.2 89 55.1
MELO3C008806.2 Cucumis melo HOM05D003715 ORTHO05D003958 9.4e-16 87.8 88 55.7
VMungo1383G2890 Vigna mungo HOM05D003715 ORTHO05D003958 9.4e-16 87.8 88 56.8
Hund19231 Selenicereus undatus HOM05D003715 ORTHO05D003958 1.6e-15 87.0 88 52.3
vmacro12564 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 1.6e-15 87.0 90 57.8
Cpa.g.sc51.130 Carica papaya HOM05D003715 ORTHO05D003958 2.1e-15 86.7 90 56.7
Oeu035703.1 Olea europaea HOM05D003715 ORTHO05D003958 2.1e-15 86.7 228 32.9
PSO384G3755 Papaver somniferum HOM05D003715 ORTHO05D003958 2.1e-15 86.7 88 48.9
Sabra13G0051000 Salix brachista HOM05D003715 ORTHO05D003958 2.7e-15 86.3 90 51.1
arahy.Tifrunner.gnm1.ann1.KTU7AY Arachis hypogaea HOM05D003715 ORTHO05D003958 4.7e-15 85.5 91 47.3
SalBow1G3164 Salvia bowleyana HOM05D003715 ORTHO05D003958 4.7e-15 85.5 190 35.3
FvH4_1g28230 Fragaria vesca HOM05D003715 ORTHO05D003958 6.1e-15 85.1 114 46.5
FAN23G0877 Fragaria x ananassa HOM05D003715 ORTHO05D003958 6.1e-15 85.1 114 46.5
FAN28G3019 Fragaria x ananassa HOM05D003715 ORTHO05D003958 7.9e-15 84.7 86 53.5
PSO339G5928 Papaver somniferum HOM05D003715 ORTHO05D003958 1.0e-14 84.3 236 28.4
FAN26G1768 Fragaria x ananassa HOM05D003715 ORTHO05D003958 1.8e-14 83.6 86 53.5
Sed0021221 Sechium edule HOM05D003715 ORTHO05D003958 2.3e-14 83.2 237 30.8
MD12G1005100 Malus domestica HOM05D003715 ORTHO05D003958 3.0e-14 82.8 223 33.6
CSS0027479 Camellia sinensis var. sinensis HOM05D003715 ORTHO05D003958 5.1e-14 82.0 92 52.2
Os03g0806600 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 1.1e-13 80.9 88 46.6
Lsat_1_v5_gn_6_37461 Lactuca sativa HOM05D003715 ORTHO05D003958 1.5e-13 80.5 86 53.5
ECA238G2879 Erigeron canadensis HOM05D003715 ORTHO05D003958 2.0e-13 80.1 87 47.1
HanXRQChr14g0438161 Helianthus annuus HOM05D003715 ORTHO05D003958 2.0e-13 80.1 221 33.5
AUR62032710 Chenopodium quinoa HOM05D003715 ORTHO05D003958 4.4e-13 79.0 159 33.3
Lalb_Chr14g0364551 Lupinus albus HOM05D003715 ORTHO05D003958 5.7e-13 78.6 195 36.4
Nitab4.5_0000394g0140 Nicotiana tabacum HOM05D003715 ORTHO05D003958 5.7e-13 78.6 88 48.9
ATR0737G080 Amborella trichopoda HOM05D003715 ORTHO05D003958 7.4e-13 78.2 88 47.7
EL10Ac3g06828 Beta vulgaris HOM05D003715 ORTHO05D003958 7.4e-13 78.2 89 49.4
MBI04_g28023_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.3e-12 77.4 86 50.0
MBI04_g47731_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.3e-12 77.4 86 50.0
Sed0002226 Sechium edule HOM05D003715 ORTHO05D003958 2.2e-12 76.6 88 51.1
Oeu024502.1 Olea europaea HOM05D003715 ORTHO05D003958 3.7e-12 75.9 87 48.3
SGA_v2.0_scaffold94G28404 Striga asiatica HOM05D003715 ORTHO05D003958 1.1e-11 74.3 203 31.5
MBI04_g37012_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.4e-11 73.9 86 48.8
Os07g0204100 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 1.8e-11 73.6 90 48.9
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 2.4e-11 73.2 88 47.7
AUR62032043 Chenopodium quinoa HOM05D003715 ORTHO05D003958 2.4e-11 73.2 158 33.5
ECA233G0839 Erigeron canadensis HOM05D003715 ORTHO05D003958 2.4e-11 73.2 89 47.2
Duzib128G0041 Durio zibethinus HOM05D003715 ORTHO05D003958 7.0e-11 71.6 88 48.9
CDE02G4343 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 9.1e-11 71.2 143 37.8
CDE05G3048 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 1.6e-10 70.5 171 35.7
HanXRQChr13g0397871 Helianthus annuus HOM05D003715 ORTHO05D003958 2.0e-10 70.1 89 44.9
HanXRQChr02g0054571 Helianthus annuus HOM05D003715 ORTHO05D003958 4.5e-10 68.9 89 49.4
SEGI_20586 Sequoiadendron giganteum HOM05D003715 ORTHO05D003958 1.7e-09 67.0 128 38.3
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 2.2e-09 66.6 69 49.3
Zm00001eb302900 Zea mays HOM05D003715 ORTHO05D003958 5.0e-09 65.5 92 41.3
HPP92_014229 Vanilla planifolia HOM05D035551 ORTHO05D003958 8.5e-09 64.7 91 46.2
TAR633G2492 Trochodendron aralioides HOM05D003715 ORTHO05D003958 1.1e-08 64.3 88 40.9
Solyc10g080670.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 7.2e-08 61.6 222 28.8
Actinidia38611 Actinidia chinensis HOM05D003715 ORTHO05D003958 1.2e-07 60.8 74 48.6
Nitab4.5_0001079g0120 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.6e-07 60.5 127 33.1
arahy.Tifrunner.gnm1.ann1.FCYU2S Arachis hypogaea HOM05D003715 ORTHO05D003958 4.7e-07 58.9 134 32.8
Sopen10g031210 Solanum pennellii HOM05D003715 ORTHO05D003958 3.0e-06 56.2 206 28.2
Nitab4.5_0009367g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 8.8e-06 54.7 127 31.5


User provided reference genes

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