Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g30270 Brassica carinata HOM05D003685 ORTHO05D003168 4.2e-30 134.0 67 100.0
BcaC05g30536 Brassica carinata HOM05D003685 ORTHO05D003168 2.1e-26 121.7 84 77.4
A05p43820 Brassica napus HOM05D003685 ORTHO05D003168 2.1e-26 121.7 84 77.4
C05p63400 Brassica napus HOM05D003685 ORTHO05D003168 2.1e-26 121.7 84 77.4
BolC5t35004H Brassica oleracea HOM05D003685 ORTHO05D003168 2.1e-26 121.7 84 77.4
BraA05t23119Z Brassica rapa HOM05D003685 ORTHO05D003168 2.1e-26 121.7 84 77.4
A03p33270 Brassica napus HOM05D003685 ORTHO05D003168 1.4e-25 119.0 84 76.2
Sp3g02430 Schrenkiella parvula HOM05D003685 ORTHO05D003168 1.8e-25 118.6 84 76.2
BcaC01g04402 Brassica carinata HOM05D003685 ORTHO05D003168 3.1e-25 117.9 84 75.0
BcaC01g04406 Brassica carinata HOM05D003685 ORTHO05D003168 3.1e-25 117.9 84 75.0
C03p40520 Brassica napus HOM05D003685 ORTHO05D003168 3.1e-25 117.9 84 75.0
BolC3t16317H Brassica oleracea HOM05D003685 ORTHO05D003168 3.1e-25 117.9 84 75.0
BraA03t12499Z Brassica rapa HOM05D003685 ORTHO05D003168 3.1e-25 117.9 84 75.0
BcaB04g19369 Brassica carinata HOM05D003685 ORTHO05D003168 4.0e-25 117.5 84 75.0
AL3G13100 Arabidopsis lyrata HOM05D003685 ORTHO05D003168 5.3e-25 117.1 84 75.0
CARHR077450 Cardamine hirsuta HOM05D003685 ORTHO05D003168 1.5e-24 115.5 84 73.8
Aa31LG5G13930 Aethionema arabicum HOM05D003685 ORTHO05D003168 2.0e-24 115.2 84 73.8
AT3G03430 Arabidopsis thaliana HOM05D003685 ORTHO05D003168 2.6e-24 114.8 84 73.8
BcaC09g47746 Brassica carinata HOM05D003685 ORTHO05D003168 1.3e-23 112.5 84 71.4
BolC1t05831H Brassica oleracea HOM05D003685 ORTHO05D003168 4.9e-23 110.5 84 71.4
CARHR195720 Cardamine hirsuta HOM05D003685 ORTHO05D003168 5.4e-22 107.1 84 70.2
Sp6g26740 Schrenkiella parvula HOM05D003685 ORTHO05D003168 5.4e-22 107.1 84 67.9
BraA01t04580Z Brassica rapa HOM05D003685 ORTHO05D003168 9.3e-22 106.3 84 67.9
Thhalv10015161m.g Eutrema salsugineum HOM05D003685 ORTHO05D003168 1.2e-21 105.9 84 66.7
AL6G28560 Arabidopsis lyrata HOM05D003685 ORTHO05D003168 2.7e-21 104.8 84 67.9
AT5G17480 Arabidopsis thaliana HOM05D003685 ORTHO05D003168 2.7e-21 104.8 84 67.9
Carub.0006s1571 Capsella rubella HOM05D003685 ORTHO05D003168 7.9e-21 103.2 84 66.7
THA.LOC104820836 Tarenaya hassleriana HOM05D003685 ORTHO05D003168 1.0e-20 102.8 84 65.5
Thecc.04G119100 Theobroma cacao HOM05D003685 ORTHO05D003168 8.7e-20 99.8 84 65.5
Cpa.g.sc116.33 Carica papaya HOM05D003685 ORTHO05D003168 4.3e-19 97.4 84 66.7
COL.COLO4_15735 Corchorus olitorius HOM05D003685 ORTHO05D003168 7.4e-19 96.7 84 63.1
Duzib211G0337 Durio zibethinus HOM05D003685 ORTHO05D003168 7.4e-19 96.7 82 64.6
BraA10t44250Z Brassica rapa HOM05D003685 ORTHO05D003168 3.6e-18 94.4 84 61.9
Manes.01G116500 Manihot esculenta HOM05D003685 ORTHO05D003168 6.2e-18 93.6 85 62.4
Duzib133G0562 Durio zibethinus HOM05D003685 ORTHO05D003168 8.1e-18 93.2 84 63.1
Manes.17G064700 Manihot esculenta HOM05D003685 ORTHO05D003168 1.4e-17 92.4 79 63.3
Hma1.2p1_0832F.1_g225520 Hydrangea macrophylla HOM05D003685 ORTHO05D003168 4.0e-17 90.9 82 59.8
DCAR_025870 Daucus carota HOM05D003685 ORTHO05D003168 9.0e-17 89.7 84 57.1
CSS0039227 Camellia sinensis var. sinensis HOM05D003685 ORTHO05D003168 1.5e-16 89.0 82 59.8
Actinidia22789 Actinidia chinensis HOM05D000008 ORTHO05D000005 2.0e-16 88.6 82 58.5
Sed0024816 Sechium edule HOM05D003685 ORTHO05D003168 2.0e-16 88.6 84 56.0
ClCG03G008650 Citrullus lanatus HOM05D003685 ORTHO05D003168 5.8e-16 87.0 82 56.1
PGR042G0188 Punica granatum HOM05D003685 ORTHO05D003168 5.8e-16 87.0 82 57.3
QL11p003870 Quercus lobata HOM05D003685 ORTHO05D003168 9.9e-16 86.3 84 58.3
MELO3C022853.2 Cucumis melo HOM05D003685 ORTHO05D003168 1.3e-15 85.9 82 54.9
TWI77G0488 Tripterygium wilfordii HOM05D003685 ORTHO05D003168 1.3e-15 85.9 84 57.1
CSS0016349 Camellia sinensis var. sinensis HOM05D003685 ORTHO05D003168 1.7e-15 85.5 82 57.3
TWI53G1623 Tripterygium wilfordii HOM05D003685 ORTHO05D003168 1.7e-15 85.5 84 56.0
TWI74G1588 Tripterygium wilfordii HOM05D003685 ORTHO05D003168 2.2e-15 85.1 84 57.1
Lalb_Chr20g0117001 Lupinus albus HOM05D003685 ORTHO05D003168 3.8e-15 84.3 85 56.5
CsaV3_5G024070 Cucumis sativus L. HOM05D000964 ORTHO05D003168 4.9e-15 84.0 79 55.7
Sc11g0008680 Simmondsia chinensis HOM05D003685 ORTHO05D003168 6.4e-15 83.6 86 55.8
Gohir.A11G160900 Gossypium hirsutum HOM05D003685 ORTHO05D003168 8.4e-15 83.2 82 56.1
Gohir.D11G167200 Gossypium hirsutum HOM05D003685 ORTHO05D003168 8.4e-15 83.2 82 56.1
Gorai.007G178300 Gossypium raimondii HOM05D003685 ORTHO05D003168 8.4e-15 83.2 82 56.1
Sed0020121 Sechium edule HOM05D003685 ORTHO05D003168 1.1e-14 82.8 82 52.4
Cc07_g08080 Coffea canephora HOM05D003685 ORTHO05D003168 1.4e-14 82.4 82 53.7
Oeu000910.1 Olea europaea HOM05D003685 ORTHO05D003168 1.4e-14 82.4 82 53.7
Psat2g041920 Pisum sativum HOM05D003685 ORTHO05D003168 1.4e-14 82.4 82 53.7
MD17G1257600 Malus domestica HOM05D003685 ORTHO05D003168 1.9e-14 82.0 82 54.9
Medtr5g079470 Medicago truncatula HOM05D003685 ORTHO05D003168 1.9e-14 82.0 82 52.4
BcaC03g13523 Brassica carinata HOM05D003685 ORTHO05D003168 3.2e-14 81.3 77 57.1
A02p04230 Brassica napus HOM05D003685 ORTHO05D003168 3.2e-14 81.3 77 57.1
C02p09110 Brassica napus HOM05D003685 ORTHO05D003168 3.2e-14 81.3 77 57.1
BolC2t06822H Brassica oleracea HOM05D003685 ORTHO05D003168 3.2e-14 81.3 77 57.1
BraA02t05386Z Brassica rapa HOM05D003685 ORTHO05D003168 3.2e-14 81.3 77 57.1
Potri.017G126400 Populus trichocarpa HOM05D003685 ORTHO05D003168 3.2e-14 81.3 81 56.8
Lalb_Chr15g0084851 Lupinus albus HOM05D003685 ORTHO05D003168 4.2e-14 80.9 82 52.4
Lalb_Chr18g0053371 Lupinus albus HOM05D003685 ORTHO05D003168 4.2e-14 80.9 82 52.4
MD09G1262700 Malus domestica HOM05D003685 ORTHO05D003168 4.2e-14 80.9 82 52.4
Manes.13G093900 Manihot esculenta HOM05D003685 ORTHO05D003168 4.2e-14 80.9 83 53.0
Prupe.3G160400 Prunus persica HOM05D003685 ORTHO05D003168 7.1e-14 80.1 82 52.4
SalBow3G2120 Salvia bowleyana HOM05D003685 ORTHO05D003168 7.1e-14 80.1 82 52.4
TPR.G3491 Trifolium pratense HOM05D003685 ORTHO05D003168 7.1e-14 80.1 82 51.2
AUR62023181 Chenopodium quinoa HOM05D003685 ORTHO05D003168 9.3e-14 79.7 77 53.2
Lj6g0007365 Lotus japonicus HOM05D003685 ORTHO05D003168 9.3e-14 79.7 82 52.4
Gohir.A07G077100 Gossypium hirsutum HOM05D003685 ORTHO05D003168 1.2e-13 79.3 82 53.7
Gorai.001G086900 Gossypium raimondii HOM05D003685 ORTHO05D003168 1.2e-13 79.3 82 53.7
Lsat_1_v5_gn_3_81860 Lactuca sativa HOM05D003685 ORTHO05D003168 1.2e-13 79.3 84 53.6
BcaC05g30274 Brassica carinata HOM05D003685 ORTHO05D003168 1.6e-13 79.0 48 85.4
FvH4_1g28900 Fragaria vesca HOM05D003685 ORTHO05D003168 2.7e-13 78.2 82 51.2
FAN19G1718 Fragaria x ananassa HOM05D003685 ORTHO05D003168 2.7e-13 78.2 82 51.2
LjContig00141g0023457 Lotus japonicus HOM05D003685 ORTHO05D003168 2.7e-13 78.2 82 50.0
SalBow7G2561 Salvia bowleyana HOM05D003685 ORTHO05D003168 2.7e-13 78.2 82 51.2
Actinidia36369 Actinidia chinensis HOM05D003685 ORTHO05D003168 3.5e-13 77.8 79 53.2
RcHm_v2.0_Chr3g0493401 Rosa chinensis HOM05D003685 ORTHO05D003168 3.5e-13 77.8 82 52.4
Atru.chr1.1843 Acer truncatum HOM05D003685 ORTHO05D003168 4.6e-13 77.4 85 52.9
AUR62023227 Chenopodium quinoa HOM05D003685 ORTHO05D003168 4.6e-13 77.4 77 53.2
Nitab4.5_0003855g0030 Nicotiana tabacum HOM05D003685 ORTHO05D003168 4.6e-13 77.4 82 50.0
Sc10g0000750 Simmondsia chinensis HOM05D003685 ORTHO05D003168 4.6e-13 77.4 77 54.5
FAN23G1531 Fragaria x ananassa HOM05D003685 ORTHO05D003168 6.0e-13 77.0 82 51.2
Gohir.D07G081800 Gossypium hirsutum HOM05D003685 ORTHO05D003168 6.0e-13 77.0 82 52.4
HanXRQChr14g0440341 Helianthus annuus HOM05D003685 ORTHO05D003168 6.0e-13 77.0 84 47.6
CAN.G1067.5 Capsicum annuum HOM05D003685 ORTHO05D003168 7.9e-13 76.6 82 50.0
Ca_05785_v3 Cicer arietinum L. HOM05D003685 ORTHO05D003168 7.9e-13 76.6 82 48.8
Ca_30988_v3 Cicer arietinum L. HOM05D003685 ORTHO05D003168 7.9e-13 76.6 82 48.8
HanXRQChr12g0375651 Helianthus annuus HOM05D003685 ORTHO05D003168 7.9e-13 76.6 82 50.0
Phvul.001G231100 Phaseolus vulgaris HOM05D003685 ORTHO05D003168 7.9e-13 76.6 82 50.0
Rhsim08G0086900 Rhododendron simsii HOM05D003685 ORTHO05D003168 1.0e-12 76.3 86 51.2
Cfa002094 Carpinus fangiana HOM05D003685 ORTHO05D003168 1.3e-12 75.9 79 50.6
HanXRQChr15g0475431 Helianthus annuus HOM05D003685 ORTHO05D003168 1.3e-12 75.9 84 48.8
Nn3g18248 Nelumbo nucifera HOM05D003685 ORTHO05D003168 1.3e-12 75.9 84 51.2
HanXRQChr07g0193541 Helianthus annuus HOM05D003685 ORTHO05D003168 1.8e-12 75.5 82 51.2
Nitab4.5_0000036g0480 Nicotiana tabacum HOM05D003685 ORTHO05D003168 1.8e-12 75.5 82 47.6
PGR004G0993 Punica granatum HOM05D003685 ORTHO05D003168 1.8e-12 75.5 83 50.6
vmacro22373 Vaccinium macrocarpon HOM05D014992 ORTHO05D003168 1.8e-12 75.5 86 52.3
vmacro22897 Vaccinium macrocarpon HOM05D003685 ORTHO05D003168 1.8e-12 75.5 86 52.3
arahy.Tifrunner.gnm1.ann1.20BG1F Arachis hypogaea HOM05D003685 ORTHO05D003168 2.3e-12 75.1 77 53.2
arahy.Tifrunner.gnm1.ann1.TR7VBX Arachis hypogaea HOM05D003685 ORTHO05D003168 2.3e-12 75.1 77 53.2
Glyma.14G216000 Glycine max HOM05D003685 ORTHO05D003168 2.3e-12 75.1 82 50.0
Solyc02g063340.1 Solanum lycopersicum HOM05D003685 ORTHO05D003168 2.3e-12 75.1 77 50.6
Sopen02g014410 Solanum pennellii HOM05D003685 ORTHO05D003168 2.3e-12 75.1 77 50.6
PGSC0003DMG400010392 Solanum tuberosum HOM05D003685 ORTHO05D003168 2.3e-12 75.1 77 50.6
CAN.G1061.44 Capsicum annuum HOM05D003685 ORTHO05D003168 3.0e-12 74.7 82 46.3
Migut.L00461 Erythranthe guttata HOM05D003685 ORTHO05D003168 3.9e-12 74.3 82 48.8
A10p21910 Brassica napus HOM05D003685 ORTHO05D003168 5.1e-12 73.9 47 74.5
Lalb_Chr10g0104461 Lupinus albus HOM05D003685 ORTHO05D003168 5.1e-12 73.9 77 51.9
Potri.004G089200 Populus trichocarpa HOM05D003685 ORTHO05D003168 5.1e-12 73.9 81 51.9
Solyc02g091480.1 Solanum lycopersicum HOM05D003685 ORTHO05D003168 5.1e-12 73.9 82 46.3
Aqoxy3G00097 Aquilegia oxysepala HOM05D003685 ORTHO05D003168 8.7e-12 73.2 84 51.2
CiPaw.03G069700 Carya illinoinensis HOM05D003685 ORTHO05D003168 8.7e-12 73.2 85 51.8
ECA246G1160 Erigeron canadensis HOM05D003685 ORTHO05D003168 8.7e-12 73.2 84 50.0
Phvul.008G234700 Phaseolus vulgaris HOM05D003685 ORTHO05D003168 8.7e-12 73.2 82 48.8
Glyma.02G245901 Glycine max HOM05D003685 ORTHO05D003168 1.5e-11 72.4 82 47.6
Sopen02g036100 Solanum pennellii HOM05D003685 ORTHO05D003168 1.5e-11 72.4 82 45.1
Lalb_Chr17g0346151 Lupinus albus HOM05D003685 ORTHO05D003168 1.9e-11 72.0 82 47.6
Sabra17G0106100 Salix brachista HOM05D003685 ORTHO05D003168 1.9e-11 72.0 75 53.3
PSO017G5026 Papaver somniferum HOM05D003685 ORTHO05D003168 2.5e-11 71.6 79 51.9
PSO478G3570 Papaver somniferum HOM05D003685 ORTHO05D003168 2.5e-11 71.6 79 51.9
ECA238G1186 Erigeron canadensis HOM05D003685 ORTHO05D003168 3.3e-11 71.2 84 47.6
Ciclev10013229m.g Citrus clementina HOM05D003685 ORTHO05D003168 4.3e-11 70.9 85 47.1
PGSC0003DMG400030652 Solanum tuberosum HOM05D003685 ORTHO05D003168 4.3e-11 70.9 82 43.9
CiPaw.04G046300 Carya illinoinensis HOM05D003685 ORTHO05D003168 5.6e-11 70.5 78 48.7
TAR629G2979 Trochodendron aralioides HOM05D003685 ORTHO05D003168 5.6e-11 70.5 82 51.2
Haze_16359 Corylus avellana HOM05D003685 ORTHO05D003168 9.6e-11 69.7 74 50.0
unitig_37.g12380 Utricularia gibba HOM05D000408 ORTHO05D000655 1.3e-10 69.3 82 43.9
MBI04_g34112_MAGBIO Magnolia biondii HOM05D003685 ORTHO05D003168 2.1e-10 68.6 81 45.7
MBI12_g30397_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D003168 3.7e-10 67.8 74 50.0
Os08g0560700 Oryza sativa ssp. japonica HOM05D003685 ORTHO05D003168 3.7e-10 67.8 81 46.9
Glyma.11G217300 Glycine max HOM05D003685 ORTHO05D003168 4.8e-10 67.4 91 40.7
Zm00001eb175870 Zea mays HOM05D003685 ORTHO05D003168 4.8e-10 67.4 77 48.1
Lsat_1_v5_gn_2_79940 Lactuca sativa HOM05D003685 ORTHO05D003168 6.2e-10 67.0 76 44.7
QL03p039371 Quercus lobata HOM05D003685 ORTHO05D003168 1.1e-09 66.2 82 48.8
Dinv14887 Davidia involucrata HOM05D000559 ORTHO05D000596 1.4e-09 65.9 66 57.6
HPP92_003364 Vanilla planifolia HOM05D003685 ORTHO05D003168 1.8e-09 65.5 76 46.1
Zm00001eb039230 Zea mays HOM05D003685 ORTHO05D003168 3.1e-09 64.7 76 47.4
ClCG05G011030 Citrullus lanatus HOM05D003685 ORTHO05D003168 4.0e-09 64.3 80 47.5
MELO3C020277.2 Cucumis melo HOM05D003685 ORTHO05D003168 5.3e-09 63.9 84 48.8
MD05G1258400 Malus domestica HOM05D003685 ORTHO05D003168 5.3e-09 63.9 81 45.7
CsaV3_3G021560 Cucumis sativus L. HOM05D003685 ORTHO05D003168 1.2e-08 62.8 84 47.6
HPP92_005033 Vanilla planifolia HOM05D003685 ORTHO05D003168 1.2e-08 62.8 86 47.7
Peaxi162Scf00911g00004 Petunia axillaris HOM05D003685 ORTHO05D003168 7.6e-08 60.1 80 40.0
HanXRQChr16g0530831 Helianthus annuus HOM05D003685 ORTHO05D003168 1.3e-07 59.3 76 43.4
Lsat_1_v5_gn_4_156660 Lactuca sativa HOM05D003685 ORTHO05D003168 1.3e-07 59.3 84 44.0
Nitab4.5_0009638g0020 Nicotiana tabacum HOM05D003685 ORTHO05D003168 1.3e-07 59.3 72 43.1
Sabra04G0059800 Salix brachista HOM05D003685 ORTHO05D003168 1.3e-07 59.3 41 68.3
Sed0019865 Sechium edule HOM05D003685 ORTHO05D003168 1.3e-07 59.3 72 48.6
Sed0006736 Sechium edule HOM05D003685 ORTHO05D003168 2.2e-07 58.5 81 40.7
Peaxi162Scf02113g00006 Petunia axillaris HOM05D003685 ORTHO05D003168 2.9e-07 58.2 71 43.7
MELO3C030156.2 Cucumis melo HOM05D003685 ORTHO05D003168 3.8e-07 57.8 81 42.0
FvH4_3g11850 Fragaria vesca HOM05D003685 ORTHO05D003168 3.8e-07 57.8 79 44.3
Nn4g24200 Nelumbo nucifera HOM05D003685 ORTHO05D003168 3.8e-07 57.8 38 71.1
Nitab4.5_0002664g0060 Nicotiana tabacum HOM05D003685 ORTHO05D003168 6.5e-07 57.0 71 42.3
arahy.Tifrunner.gnm1.ann1.3WH4I0 Arachis hypogaea HOM05D000001 ORTHO05D009971 1.4e-06 55.8 74 41.9
arahy.Tifrunner.gnm1.ann1.YU644E Arachis hypogaea HOM05D000001 ORTHO05D009971 1.4e-06 55.8 74 41.9
RcHm_v2.0_Chr5g0019281 Rosa chinensis HOM05D003685 ORTHO05D003168 1.4e-06 55.8 79 40.5
Lj4g0014778 Lotus japonicus HOM05D003685 ORTHO05D003168 1.9e-06 55.5 76 39.5
Sed0015058 Sechium edule HOM05D003685 ORTHO05D003168 1.9e-06 55.5 81 44.4
Lj4g0022454 Lotus japonicus HOM05D003685 ORTHO05D003168 3.2e-06 54.7 78 38.5
MBI19_g13914_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000203 9.3e-06 53.1 36 66.7


User provided reference genes

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