Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g30244 Brassica carinata HOM05D004137 ORTHO05D004804 9.3e-33 142.9 70 100.0
BcaC05g30291 Brassica carinata HOM05D004137 ORTHO05D004804 9.3e-33 142.9 70 100.0
A05p43490 Brassica napus HOM05D004137 ORTHO05D004804 4.6e-32 140.6 70 98.6
BraA05t23089Z Brassica rapa HOM05D004137 ORTHO05D004804 4.6e-32 140.6 70 98.6
BcaC05g29894 Brassica carinata HOM05D004137 ORTHO05D004804 1.4e-31 139.0 70 97.1
BolC5t34968H Brassica oleracea HOM05D004137 ORTHO05D004804 1.4e-31 139.0 70 97.1
Carub.0003s0313 Capsella rubella HOM05D004137 ORTHO05D004804 2.5e-25 118.2 74 85.1
Manes.08G144511 Manihot esculenta HOM05D004137 ORTHO05D004804 4.1e-12 74.3 65 55.4
Ciclev10023092m.g Citrus clementina HOM05D004137 ORTHO05D004804 1.2e-11 72.8 69 53.6
Gohir.A12G175500 Gossypium hirsutum HOM05D004137 ORTHO05D004804 1.2e-11 72.8 81 51.9
Manes.09G141000 Manihot esculenta HOM05D004137 ORTHO05D004804 1.6e-11 72.4 83 48.2
Cpa.g.sc51.119 Carica papaya HOM05D004137 ORTHO05D004804 2.6e-11 71.6 60 56.7
Gohir.D12G178750 Gossypium hirsutum HOM05D004137 ORTHO05D004804 1.7e-10 68.9 60 58.3
Gorai.008G191500 Gossypium raimondii HOM05D004137 ORTHO05D004804 2.9e-10 68.2 60 56.7
Potri.013G057832 Populus trichocarpa HOM05D004137 ORTHO05D004804 2.9e-10 68.2 65 50.8
Lalb_Chr14g0364521 Lupinus albus HOM05D004137 ORTHO05D004804 8.5e-10 66.6 62 53.2
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 8.5e-10 66.6 59 57.6
Lsat_1_v5_gn_1_59720 Lactuca sativa HOM05D004137 ORTHO05D004804 1.1e-09 66.2 59 52.5
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 1.1e-09 66.2 59 54.2
Cfa016445 Carpinus fangiana HOM05D001721 ORTHO05D001804 1.5e-09 65.9 73 50.7
Ah.13g075420 Amaranthus hybridus HOM05D004137 ORTHO05D004804 1.9e-09 65.5 59 49.2
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 1.9e-09 65.5 58 51.7
CiPaw.09G002200 Carya illinoinensis HOM05D004137 ORTHO05D004804 3.2e-09 64.7 75 48.0
Cc06_g23020 Coffea canephora HOM05D004137 ORTHO05D004804 5.5e-09 63.9 59 52.5
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 7.2e-09 63.5 58 50.0
Potri.013G057766 Populus trichocarpa HOM05D004137 ORTHO05D004804 7.2e-09 63.5 59 52.5
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 7.2e-09 63.5 58 51.7
CAN.G960.46 Capsicum annuum HOM05D004137 ORTHO05D004804 9.4e-09 63.2 59 49.2
MELO3C026884.2 Cucumis melo HOM05D004137 ORTHO05D004804 1.2e-08 62.8 61 54.1
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 1.6e-08 62.4 58 50.0
Solyc10g078570.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 3.6e-08 61.2 59 47.5
PGSC0003DMG400008382 Solanum tuberosum HOM05D004137 ORTHO05D004804 3.6e-08 61.2 59 47.5
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 6.1e-08 60.5 58 50.0
Migut.J01885 Erythranthe guttata HOM05D004137 ORTHO05D004804 6.1e-08 60.5 59 49.2
ClCG10G013400 Citrullus lanatus HOM05D004137 ORTHO05D004804 8.0e-08 60.1 58 56.9
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 8.0e-08 60.1 59 49.2
Haze_19423 Corylus avellana HOM05D004137 ORTHO05D004804 1.0e-07 59.7 73 47.9
Sed0004008 Sechium edule HOM05D004137 ORTHO05D004804 1.0e-07 59.7 61 49.2
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 1.4e-07 59.3 58 48.3
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 2.3e-07 58.5 58 48.3
unitig_0.g1150 Utricularia gibba HOM05D004137 ORTHO05D004804 2.3e-07 58.5 63 46.0
Prupe.7G004500 Prunus persica HOM05D004137 ORTHO05D004804 4.0e-07 57.8 58 50.0
Glyma.19G112300 Glycine max HOM05D004137 ORTHO05D004804 1.2e-06 56.2 70 44.3
vmacro20990 Vaccinium macrocarpon HOM05D004137 ORTHO05D004804 1.5e-06 55.8 59 47.5
HPP92_015924 Vanilla planifolia HOM05D004137 ORTHO05D004804 1.5e-06 55.8 59 49.2
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 5.7e-06 53.9 60 43.3
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 5.7e-06 53.9 58 46.6
Lj1g0005734 Lotus japonicus HOM05D004137 ORTHO05D004804 5.7e-06 53.9 57 49.1
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 7.5e-06 53.5 58 46.6
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 9.7e-06 53.1 58 44.8
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 9.7e-06 53.1 58 44.8
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 9.7e-06 53.1 58 44.8
Medtr7g085660 Medicago truncatula HOM05D004137 ORTHO05D004804 9.7e-06 53.1 70 47.1


User provided reference genes

Program Settings