Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g30194 Brassica carinata HOM05D000329 ORTHO05D005330 0.0e+00 2216.0 1131 100.0
BolC5t34929H Brassica oleracea HOM05D000329 ORTHO05D005330 0.0e+00 2111.6 1173 94.3
C05p62760 Brassica napus HOM05D000329 ORTHO05D005330 0.0e+00 2109.3 1173 94.1
A05p42990 Brassica napus HOM05D000329 ORTHO05D005330 0.0e+00 2100.1 1173 93.8
BraA05t23043Z Brassica rapa HOM05D000329 ORTHO05D005330 0.0e+00 2083.5 1186 92.5
BcaC05g30221 Brassica carinata HOM05D000329 ORTHO05D005330 0.0e+00 2059.3 1173 91.9
Sp3g03340 Schrenkiella parvula HOM05D000329 ORTHO05D005330 0.0e+00 1991.1 1175 88.8
Carub.0003s0365 Capsella rubella HOM05D000329 ORTHO05D005330 0.0e+00 1974.9 1172 87.6
AT3G04490 Arabidopsis thaliana HOM05D000329 ORTHO05D005330 0.0e+00 1961.0 1173 87.0
AL3G14470 Arabidopsis lyrata HOM05D000329 ORTHO05D005330 0.0e+00 1944.9 1154 87.9
BcaC05g29938 Brassica carinata HOM05D000329 ORTHO05D005330 0.0e+00 1884.8 1173 87.0
Thhalv10019943m.g Eutrema salsugineum HOM05D000329 ORTHO05D005330 0.0e+00 1869.7 1173 84.5
Aa31LG5G14930 Aethionema arabicum HOM05D000329 ORTHO05D005330 0.0e+00 1854.0 1179 82.0
THA.LOC104827286 Tarenaya hassleriana HOM05D000329 ORTHO05D005330 0.0e+00 1837.8 1171 81.3
CARHR078650 Cardamine hirsuta HOM05D000329 ORTHO05D005330 0.0e+00 1592.4 915 89.6
Manes.09G147900 Manihot esculenta HOM05D000329 ORTHO05D005330 0.0e+00 1560.8 1172 69.5
Thecc.05G271000 Theobroma cacao HOM05D000329 ORTHO05D005330 0.0e+00 1557.3 1175 69.3
COL.COLO4_15478 Corchorus olitorius HOM05D000329 ORTHO05D005330 0.0e+00 1552.0 1180 69.1
Gorai.004G249100 Gossypium raimondii HOM05D000329 ORTHO05D005330 0.0e+00 1530.4 1173 68.5
Duzib106G0267 Durio zibethinus HOM05D000329 ORTHO05D005330 0.0e+00 1530.0 1176 68.1
Gohir.A08G217300 Gossypium hirsutum HOM05D000329 ORTHO05D005330 0.0e+00 1530.0 1173 68.5
Atru.chr2.977 Acer truncatum HOM05D000329 ORTHO05D005330 0.0e+00 1526.1 1178 67.8
Ciclev10018568m.g Citrus clementina HOM05D000329 ORTHO05D005330 0.0e+00 1526.1 1169 68.1
Duzib177G0982 Durio zibethinus HOM05D000329 ORTHO05D005330 0.0e+00 1514.6 1174 68.0
Potri.019G019100 Populus trichocarpa HOM05D000329 ORTHO05D005330 0.0e+00 1489.6 1169 66.6
GSVIVG01023507001 Vitis vinifera HOM05D000329 ORTHO05D005330 0.0e+00 1482.6 1176 66.0
Cfa006349 Carpinus fangiana HOM05D000329 ORTHO05D005330 0.0e+00 1477.2 1179 66.4
TWI56G0006 Tripterygium wilfordii HOM05D000329 ORTHO05D005330 0.0e+00 1475.7 1178 65.5
MD04G1230100 Malus domestica HOM05D000329 ORTHO05D005330 0.0e+00 1468.8 1164 65.8
Actinidia39997 Actinidia chinensis HOM05D000329 ORTHO05D005330 0.0e+00 1463.7 1184 64.6
Sabra19G0031800 Salix brachista HOM05D000329 ORTHO05D005330 0.0e+00 1459.9 1219 64.0
TAR636G0200 Trochodendron aralioides HOM05D000329 ORTHO05D005330 0.0e+00 1458.7 1178 65.1
Ca_09463_v3 Cicer arietinum L. HOM05D000329 ORTHO05D005330 0.0e+00 1458.4 1170 65.0
CiPaw.08G118500 Carya illinoinensis HOM05D000329 ORTHO05D005330 0.0e+00 1452.6 1159 65.2
TPR.G6911 Trifolium pratense HOM05D000329 ORTHO05D005330 0.0e+00 1450.6 1168 64.6
Glyma.03G251100 Glycine max HOM05D000329 ORTHO05D005330 0.0e+00 1449.5 1165 64.4
arahy.Tifrunner.gnm1.ann1.LXR25M Arachis hypogaea HOM05D000329 ORTHO05D005330 0.0e+00 1446.8 1168 65.2
CANSAT54G2567 Cannabis sativa HOM05D000329 ORTHO05D005330 0.0e+00 1444.1 1167 64.4
FvH4_6g01900 Fragaria vesca HOM05D000329 ORTHO05D005330 0.0e+00 1442.2 1164 65.2
Lj1g0020261 Lotus japonicus HOM05D000329 ORTHO05D005330 0.0e+00 1438.7 1169 64.4
RcHm_v2.0_Chr3g0449631 Rosa chinensis HOM05D000329 ORTHO05D005330 0.0e+00 1438.3 1164 65.3
FAN05G0322 Fragaria x ananassa HOM05D000329 ORTHO05D005330 0.0e+00 1433.3 1164 64.8
Phvul.006G105600 Phaseolus vulgaris HOM05D000329 ORTHO05D005330 0.0e+00 1433.3 1165 63.9
Atru.chr2.952 Acer truncatum HOM05D000329 ORTHO05D005330 0.0e+00 1432.9 1126 66.8
PGR004G1157 Punica granatum HOM05D000329 ORTHO05D005330 0.0e+00 1432.2 1178 63.8
Gohir.D08G234300 Gossypium hirsutum HOM05D000329 ORTHO05D005330 0.0e+00 1428.3 1173 65.2
FAN09G2051 Fragaria x ananassa HOM05D000329 ORTHO05D005330 0.0e+00 1423.3 1195 63.4
FAN14G5238 Fragaria x ananassa HOM05D000329 ORTHO05D005330 0.0e+00 1422.5 1195 63.3
Lalb_Chr18g0044041 Lupinus albus HOM05D000329 ORTHO05D005330 0.0e+00 1420.6 1167 63.5
Cc02_g08850 Coffea canephora HOM05D000329 ORTHO05D005330 0.0e+00 1407.1 1170 62.6
Nn1g02807 Nelumbo nucifera HOM05D000329 ORTHO05D005330 0.0e+00 1400.2 1177 62.3
MSTRG.316 Avicennia marina HOM05D000329 ORTHO05D005330 0.0e+00 1385.2 1174 61.2
Peaxi162Scf00304g10137 Petunia axillaris HOM05D000329 ORTHO05D005330 0.0e+00 1379.0 1151 61.9
Medtr7g115710 Medicago truncatula HOM05D000329 ORTHO05D005330 0.0e+00 1377.8 1123 64.2
Lj2C42G9 Lonicera japonica HOM05D000329 ORTHO05D005330 0.0e+00 1377.5 1174 62.5
Prupe.7G018700 Prunus persica HOM05D000329 ORTHO05D005330 0.0e+00 1375.5 1164 63.0
MELO3C010156.2 Cucumis melo HOM05D000329 ORTHO05D005330 0.0e+00 1375.1 1172 62.0
Oeu014525.1 Olea europaea HOM05D000329 ORTHO05D005330 0.0e+00 1362.8 1168 61.0
SGA_v2.0_scaffold50G18503 Striga asiatica HOM05D000329 ORTHO05D005330 0.0e+00 1362.8 1218 59.3
AUR62004837 Chenopodium quinoa HOM05D000329 ORTHO05D005330 0.0e+00 1361.7 1172 61.9
Psat3g006480 Pisum sativum HOM05D000329 ORTHO05D005330 0.0e+00 1359.7 1105 64.1
FAN14G2464 Fragaria x ananassa HOM05D000329 ORTHO05D005330 0.0e+00 1352.0 1210 60.7
Ah.06g191840 Amaranthus hybridus HOM05D000329 ORTHO05D005330 0.0e+00 1350.1 1161 61.0
PSO063G2047 Papaver somniferum HOM05D000329 ORTHO05D005330 0.0e+00 1349.3 1169 60.4
Migut.F01542 Erythranthe guttata HOM05D000329 ORTHO05D005330 0.0e+00 1343.6 1172 59.5
CsaV3_1G045290 Cucumis sativus L. HOM05D000329 ORTHO05D005330 0.0e+00 1343.2 1149 61.9
Dinv06015 Davidia involucrata HOM05D000329 ORTHO05D005330 0.0e+00 1338.2 1059 65.8
Glyma.19G248400 Glycine max HOM05D000329 ORTHO05D005330 0.0e+00 1336.2 1071 64.6
vmacro19990 Vaccinium macrocarpon HOM05D000329 ORTHO05D005330 0.0e+00 1332.0 1300 56.8
PSO017G0764 Papaver somniferum HOM05D000329 ORTHO05D005330 0.0e+00 1331.2 1169 60.0
Lsat_1_v5_gn_2_16061 Lactuca sativa HOM05D000329 ORTHO05D005330 0.0e+00 1319.3 1165 59.9
Aqoxy2G03671 Aquilegia oxysepala HOM05D000329 ORTHO05D005330 0.0e+00 1318.9 1165 60.0
CSS0019027 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D005330 0.0e+00 1314.7 1129 62.8
FAN05G4177 Fragaria x ananassa HOM05D000329 ORTHO05D005330 0.0e+00 1310.8 1187 60.4
ECA238G1533 Erigeron canadensis HOM05D000329 ORTHO05D005330 0.0e+00 1307.7 1169 59.1
HanXRQChr13g0397671 Helianthus annuus HOM05D000329 ORTHO05D005330 0.0e+00 1304.7 1157 59.6
AUR62040926 Chenopodium quinoa HOM05D000329 ORTHO05D005330 0.0e+00 1300.4 1172 60.1
Sopen12g010860 Solanum pennellii HOM05D000329 ORTHO05D005330 0.0e+00 1286.6 1071 62.0
EL10Ac4g09016 Beta vulgaris HOM05D000329 ORTHO05D005330 0.0e+00 1256.5 1157 59.6
Sc09g0004230 Simmondsia chinensis HOM05D000329 ORTHO05D005330 0.0e+00 1223.0 1018 63.2
ATR0736G139 Amborella trichopoda HOM05D000329 ORTHO05D005330 0.0e+00 1218.4 1173 55.9
Zm00001eb045870 Zea mays HOM05D000329 ORTHO05D005330 0.0e+00 1099.3 1174 51.1
Os10g0477000 Oryza sativa ssp. japonica HOM05D000329 ORTHO05D005330 0.0e+00 1090.1 1175 51.5
CSS0000359 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D005330 8.5e-301 1037.3 886 62.8
Mapoly0091s0014 Marchantia polymorpha HOM05D000329 ORTHO05D005330 3.2e-292 1008.8 1190 47.7
Pp3c6_27570 Physcomitrium patens HOM05D000329 ORTHO05D005330 1.0e-285 987.3 1191 46.7
Eucgr.H04230 Eucalyptus grandis HOM05D000329 ORTHO05D005330 4.7e-283 978.4 790 64.7
Cpa.g.sc162.46 Carica papaya HOM05D000329 ORTHO05D005330 1.7e-280 969.9 715 71.0
Sed0007400 Sechium edule HOM05D000329 ORTHO05D005330 3.1e-279 965.7 826 61.4
Solyc12g027580.3 Solanum lycopersicum HOM05D000329 ORTHO05D005330 4.1e-271 938.7 774 63.7
AagrBONN_evm.TU.Sc2ySwM_228.3774 Anthoceros agrestis HOM05D000329 ORTHO05D005330 1.4e-266 923.7 1128 45.7
QL03p030482 Quercus lobata HOM05D000329 ORTHO05D005330 1.0e-237 827.8 715 61.8
VMungo0540G0180 Vigna mungo HOM05D000329 ORTHO05D005330 2.8e-235 819.7 623 66.9
SMO356G0150 Selaginella moellendorffii HOM05D000329 ORTHO05D005330 4.0e-234 815.8 1178 41.4
unitig_46.g18343 Utricularia gibba HOM05D000329 ORTHO05D005330 7.6e-233 811.6 1204 42.7
CBR_g8586 Chara braunii HOM05D000329 ORTHO05D005330 4.3e-212 742.7 1209 38.5
QL03p030502 Quercus lobata HOM05D000329 ORTHO05D005330 2.1e-195 687.2 462 76.0
HPP92_025585 Vanilla planifolia HOM05D000329 ORTHO05D005330 3.2e-183 646.7 831 44.9
Hma1.2p1_1512F.1_g287930 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 7.2e-175 619.0 441 71.4
ClCG06G009520 Citrullus lanatus HOM05D000329 ORTHO05D005330 3.0e-165 587.0 445 67.9
SalBow6G5354 Salvia bowleyana HOM05D000329 ORTHO05D005330 2.0e-164 584.3 439 66.5
DCAR_000979 Daucus carota HOM05D000329 ORTHO05D005330 3.2e-159 567.0 555 57.1
SMO002G0004 Selaginella moellendorffii HOM05D000329 ORTHO05D005330 1.3e-155 555.1 1139 33.9
Hma1.2p1_1512F.1_g287950 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 7.7e-153 545.8 478 61.1
Nitab4.5_0003285g0090 Nicotiana tabacum HOM05D000329 ORTHO05D005330 5.5e-151 539.7 511 58.1
Pp3c16_19950 Physcomitrium patens HOM05D000329 ORTHO05D005330 1.1e-143 515.4 807 39.4
Pp3c16_19964 Physcomitrium patens HOM05D000329 ORTHO05D005330 1.1e-143 515.4 807 39.4
Nitab4.5_0000432g0100 Nicotiana tabacum HOM05D000329 ORTHO05D005330 2.5e-127 461.1 461 53.4
DCAR_000980 Daucus carota HOM05D000329 ORTHO05D005330 2.1e-126 458.0 407 60.0
CDE08G1568 Ceratophyllum demersum HOM05D000329 ORTHO05D005330 4.4e-124 450.3 453 54.5
CAN.G155.4 Capsicum annuum HOM05D000329 ORTHO05D005330 3.7e-123 447.2 333 68.2
Cpa.g.sc162.43 Carica papaya HOM05D000329 ORTHO05D005330 8.6e-120 436.0 322 66.5
Haze_04433 Corylus avellana HOM05D000329 ORTHO05D005330 3.1e-109 401.0 275 75.6
Haze_04432 Corylus avellana HOM05D000329 ORTHO05D005330 2.2e-107 394.8 314 65.3
Sabra19G0028500 Salix brachista HOM05D000329 ORTHO05D000833 3.0e-104 384.4 267 73.4
CDE08G1167 Ceratophyllum demersum HOM05D000329 ORTHO05D005330 1.6e-97 362.1 589 39.2
Nitab4.5_0003285g0070 Nicotiana tabacum HOM05D000329 ORTHO05D005330 3.0e-96 357.8 332 56.6
ClCG06G009480 Citrullus lanatus HOM05D000329 ORTHO05D005330 6.0e-89 333.6 355 52.4
Nitab4.5_0000432g0090 Nicotiana tabacum HOM05D000329 ORTHO05D005330 6.2e-86 323.6 253 64.8
arahy.Tifrunner.gnm1.ann1.I5XT77 Arachis hypogaea HOM05D000329 ORTHO05D005330 4.0e-85 320.9 253 65.6
MBI10_g44932_MAGBIO Magnolia biondii HOM05D000329 ORTHO05D005330 8.7e-80 303.1 442 43.7
HPP92_025571 Vanilla planifolia HOM05D000329 ORTHO05D005330 1.4e-77 295.8 325 49.8
Hma1.2p1_3491F.1_g336370 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 7.7e-68 263.5 223 57.4
Nitab4.5_0003285g0080 Nicotiana tabacum HOM05D000329 ORTHO05D005330 1.1e-63 249.6 284 50.4
SEGI_29711 Sequoiadendron giganteum HOM05D000329 ORTHO05D005330 3.3e-63 248.1 258 51.6
ClCG06G009470 Citrullus lanatus HOM05D000329 ORTHO05D005330 2.0e-60 238.8 218 56.0
Rhsim10G0071500 Rhododendron simsii HOM05D000329 ORTHO05D005330 1.3e-59 236.1 357 41.7
HPP92_025621 Vanilla planifolia HOM05D000329 ORTHO05D005330 8.5e-59 233.4 248 51.6
Haze_04431 Corylus avellana HOM05D000329 ORTHO05D005330 4.2e-58 231.1 200 63.5
Haze_04430 Corylus avellana HOM05D000329 ORTHO05D005330 9.4e-58 229.9 178 62.4
Nitab4.5_0000432g0080 Nicotiana tabacum HOM05D000329 ORTHO05D005330 8.0e-57 226.9 232 53.0
Nitab4.5_0000432g0110 Nicotiana tabacum HOM05D000329 ORTHO05D005330 4.4e-55 221.1 153 73.2
QL93p0164_0019 Quercus lobata HOM05D000329 ORTHO05D005330 9.7e-55 219.9 172 61.6
Hma1.2p1_3491F.1_g336380 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 3.7e-54 218.0 227 52.9
BcaB04g19325 Brassica carinata HOM05D000329 ORTHO05D005330 6.3e-54 217.2 174 68.4
HanXRQChr14g0434591 Helianthus annuus HOM05D000329 ORTHO05D005330 5.0e-51 207.6 178 57.3
Cre09.g404350 Chlamydomonas reinhardtii HOM05D000329 ORTHO05D005330 1.9e-50 205.7 1090 24.0
Nitab4.5_0025717g0010 Nicotiana tabacum HOM05D000329 ORTHO05D005330 2.3e-48 198.7 243 48.6
QL04p089247 Quercus lobata HOM05D000176 ORTHO05D000106 6.3e-46 190.7 179 56.4
QL05p031734 Quercus lobata HOM05D000176 ORTHO05D000106 6.3e-46 190.7 179 56.4
PRCOL_00003022 Prasinoderma coloniale HOM05D000329 ORTHO05D005330 1.8e-40 172.6 1223 22.2
Sed0005472 Sechium edule HOM05D000329 ORTHO05D005330 1.8e-40 172.6 182 52.7
Rhsim05G0128300 Rhododendron simsii HOM05D000329 ORTHO05D005330 9.1e-37 160.2 458 31.4
AT4G38092 Arabidopsis thaliana HOM05D000329 ORTHO05D005330 9.8e-31 140.2 107 68.2
Cpa.g.sc162.42 Carica papaya HOM05D000329 ORTHO05D028196 4.1e-29 134.8 110 67.3
ClCG06G009450 Citrullus lanatus HOM05D000329 ORTHO05D005330 8.0e-25 120.6 84 72.6
Solyc12g027560.1 Solanum lycopersicum HOM05D000329 ORTHO05D005330 1.5e-23 116.3 79 72.2
Rhsim10G0071600 Rhododendron simsii HOM05D000329 ORTHO05D005330 5.8e-23 114.4 82 67.1
Haze_05933 Corylus avellana HOM05D000329 ORTHO05D005330 1.4e-21 109.8 83 67.5
SHI23197 Sapria himalayana HOM05D000329 ORTHO05D005330 1.0e-19 103.6 135 40.0
COL.COLO4_15480 Corchorus olitorius HOM05D000329 ORTHO05D005330 1.9e-18 99.4 127 50.4
SHI23198 Sapria himalayana HOM05D005377 ORTHO05D003034 1.2e-15 90.1 78 52.6
Sed0009230 Sechium edule HOM05D000329 ORTHO05D028196 1.3e-14 86.7 59 71.2
SHI23206 Sapria himalayana HOM05D000329 ORTHO05D005330 4.9e-14 84.7 75 60.0
Lsat_1_v5_gn_7_52080 Lactuca sativa HOM05D001785 ORTHO05D001150 9.2e-13 80.5 46 82.6
Cfa012903 Carpinus fangiana HOM05D000329 ORTHO05D005330 1.2e-12 80.1 80 55.0
Haze_04429 Corylus avellana HOM05D000329 ORTHO05D005330 2.3e-11 75.9 69 59.4
SHI23201 Sapria himalayana HOM05D000329 ORTHO05D005330 1.9e-10 72.8 64 51.6
A06p19390 Brassica napus HOM05D000329 ORTHO05D028196 9.5e-10 70.5 44 81.8
BraA01t03057Z Brassica rapa HOM05D000329 ORTHO05D028196 1.2e-09 70.1 44 81.8
Lsat_1_v5_gn_0_32021 Lactuca sativa HOM05D000147 ORTHO05D013131 1.2e-09 70.1 95 42.1
SEGI_11781 Sequoiadendron giganteum HOM05D000329 ORTHO05D005330 1.6e-09 69.7 69 58.0
AT3G05035 Arabidopsis thaliana HOM05D000329 ORTHO05D005330 2.3e-08 65.9 36 86.1
MapolyY_B0019 Marchantia polymorpha HOM05D003429 ORTHO05D003873 2.3e-08 65.9 485 22.7
Lsat_1_v5_gn_8_51680 Lactuca sativa HOM05D000144 ORTHO05D005330 4.4e-07 61.6 53 56.6
Lsat_1_v5_gn_2_33241 Lactuca sativa HOM05D000329 ORTHO05D005330 5.8e-07 61.2 129 33.3
Lsat_1_v5_gn_7_55340 Lactuca sativa HOM05D000144 ORTHO05D005330 7.5e-07 60.8 53 56.6
Mapoly0017s0001 Marchantia polymorpha HOM05D003429 ORTHO05D003873 7.5e-07 60.8 355 20.8
Actinidia37867 Actinidia chinensis HOM05D003429 ORTHO05D003873 1.7e-06 59.7 471 22.1
Oeu044815.2 Olea europaea HOM05D002525 ORTHO05D002727 4.9e-06 58.2 41 58.5
RhsimUnG0020700 Rhododendron simsii HOM05D003429 ORTHO05D003873 4.9e-06 58.2 688 20.3
CSS0009838 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 6.4e-06 57.8 378 22.2
Actinidia17975 Actinidia chinensis HOM05D003429 ORTHO05D003873 8.3e-06 57.4 468 21.2
SHI23202 Sapria himalayana HOM05D000329 ORTHO05D005330 8.3e-06 57.4 76 46.1


User provided reference genes

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