Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g30164 Brassica carinata HOM05D005965 ORTHO05D007283 3.9e-268 927.5 465 100.0
BcaC05g30118 Brassica carinata HOM05D005965 ORTHO05D007283 1.1e-238 829.7 465 91.0
C05p61750 Brassica napus HOM05D005965 ORTHO05D007283 6.7e-236 820.5 466 90.3
BolC5t34833H Brassica oleracea HOM05D005965 ORTHO05D007283 4.3e-235 817.8 481 88.1
Thhalv10020753m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 2.2e-231 805.4 465 89.5
Sp3g04310 Schrenkiella parvula HOM05D005965 ORTHO05D007283 2.6e-224 781.9 465 87.1
AL3G16080 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 3.5e-216 755.0 466 82.6
Carub.0003s0477 Capsella rubella HOM05D005965 ORTHO05D007283 4.5e-216 754.6 465 83.0
AT3G05480 Arabidopsis thaliana HOM05D005965 ORTHO05D007283 6.5e-215 750.7 467 82.9
BraA05t23035Z Brassica rapa HOM05D005965 ORTHO05D007283 2.5e-190 669.1 353 95.8
Aa31LG5G15920 Aethionema arabicum HOM05D005965 ORTHO05D007283 2.0e-187 659.4 522 68.8
THA.LOC104818713 Tarenaya hassleriana HOM05D005965 ORTHO05D007283 4.9e-186 654.8 475 72.2
CSS0001755 Camellia sinensis var. sinensis HOM05D005965 ORTHO05D007283 5.6e-158 561.6 471 63.1
Gohir.D11G277600 Gossypium hirsutum HOM05D005965 ORTHO05D007283 6.8e-156 554.7 477 62.3
MD04G1201200 Malus domestica HOM05D005965 ORTHO05D007283 8.9e-156 554.3 476 62.8
Potri.013G017500 Populus trichocarpa HOM05D005965 ORTHO05D007283 2.6e-155 552.7 478 61.1
Prupe.6G321300 Prunus persica HOM05D005965 ORTHO05D007283 1.7e-154 550.1 479 62.4
Cfa006624 Carpinus fangiana HOM05D005965 ORTHO05D007283 2.4e-153 546.2 480 61.9
Gorai.007G299800 Gossypium raimondii HOM05D005965 ORTHO05D007283 2.4e-153 546.2 483 61.5
CiPaw.07G021000 Carya illinoinensis HOM05D005965 ORTHO05D007283 4.2e-153 545.4 477 61.2
GSVIVG01031150001 Vitis vinifera HOM05D005965 ORTHO05D007283 5.4e-153 545.0 475 61.9
Atru.chr2.26 Acer truncatum HOM05D005965 ORTHO05D007283 2.1e-152 543.1 477 62.5
Sabra13G0020500 Salix brachista HOM05D005965 ORTHO05D007283 2.7e-152 542.7 454 62.6
Sabra13G0016500 Salix brachista HOM05D005965 ORTHO05D007283 4.6e-152 542.0 481 60.5
Ciclev10001128m.g Citrus clementina HOM05D005965 ORTHO05D007283 2.3e-151 539.7 474 60.8
Cpa.g.sc48.91 Carica papaya HOM05D005965 ORTHO05D007283 1.5e-150 537.0 478 61.9
Rhsim05G0139400 Rhododendron simsii HOM05D005965 ORTHO05D007283 2.5e-150 536.2 512 57.2
QL03p021207 Quercus lobata HOM05D005965 ORTHO05D007283 3.3e-150 535.8 479 59.9
Actinidia21493 Actinidia chinensis HOM05D005965 ORTHO05D007283 3.1e-148 529.3 474 58.9
Lj1g0019406 Lotus japonicus HOM05D005965 ORTHO05D007283 6.4e-146 521.5 477 60.0
Gohir.A11G267700 Gossypium hirsutum HOM05D005965 ORTHO05D007283 8.4e-146 521.2 476 60.3
TAR362G0609 Trochodendron aralioides HOM05D005965 ORTHO05D007283 1.1e-145 520.8 476 59.9
Manes.08G118100 Manihot esculenta HOM05D005965 ORTHO05D007283 9.3e-145 517.7 475 58.3
FAN14G0885 Fragaria x ananassa HOM05D005965 ORTHO05D007283 1.2e-144 517.3 480 59.6
arahy.Tifrunner.gnm1.ann1.DHC6FB Arachis hypogaea HOM05D005965 ORTHO05D007283 7.9e-144 514.6 458 60.7
Sed0024378 Sechium edule HOM05D005965 ORTHO05D007283 7.9e-144 514.6 481 58.0
Oeu043357.2 Olea europaea HOM05D005965 ORTHO05D007283 1.0e-143 514.2 474 59.5
Sc16g0008610 Simmondsia chinensis HOM05D005965 ORTHO05D007283 2.3e-143 513.1 472 57.4
DCAR_003352 Daucus carota HOM05D005965 ORTHO05D007283 3.0e-143 512.7 494 55.7
TWI12G0462 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 3.9e-143 512.3 476 60.5
CsaV3_2G006620 Cucumis sativus L. HOM05D005965 ORTHO05D007283 5.1e-143 511.9 483 57.8
Medtr7g113100 Medicago truncatula HOM05D005965 ORTHO05D007283 8.7e-143 511.1 476 58.6
COL.COLO4_10514 Corchorus olitorius HOM05D005965 ORTHO05D007283 1.5e-142 510.4 420 64.3
arahy.Tifrunner.gnm1.ann1.79NSX3 Arachis hypogaea HOM05D005965 ORTHO05D007283 1.9e-142 510.0 458 60.5
RcHm_v2.0_Chr3g0455661 Rosa chinensis HOM05D005965 ORTHO05D007283 1.3e-141 507.3 478 58.8
Nn3g21434 Nelumbo nucifera HOM05D005965 ORTHO05D007283 1.6e-141 506.9 474 57.4
Dinv40342 Davidia involucrata HOM05D005965 ORTHO05D007283 2.1e-141 506.5 363 69.4
ClCG02G015450 Citrullus lanatus HOM05D005965 ORTHO05D007283 4.8e-141 505.4 478 57.9
EL10Ac4g09921 Beta vulgaris HOM05D005965 ORTHO05D007283 6.2e-141 505.0 475 57.3
Eucgr.H04531 Eucalyptus grandis HOM05D005965 ORTHO05D007283 6.2e-141 505.0 478 58.2
MSTRG.20421 Avicennia marina HOM05D005965 ORTHO05D007283 5.3e-140 501.9 476 57.4
VMungo0540G0496 Vigna mungo HOM05D005965 ORTHO05D007283 6.9e-140 501.5 478 57.1
Aqoxy2G02987 Aquilegia oxysepala HOM05D005965 ORTHO05D007283 9.0e-140 501.1 474 58.6
TPR.G33209 Trifolium pratense HOM05D005965 ORTHO05D007283 2.0e-139 500.0 477 57.0
Glyma.03G236100 Glycine max HOM05D005965 ORTHO05D007283 2.6e-139 499.6 479 58.0
Psat0s4314g0040 Pisum sativum HOM05D005965 ORTHO05D007283 1.3e-138 497.3 501 55.7
Hma1.2p1_1292F.1_g273670 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 8.4e-138 494.6 364 67.3
FAN02G0246 Fragaria x ananassa HOM05D005965 ORTHO05D007283 1.1e-137 494.2 481 58.2
Lalb_Chr18g0045721 Lupinus albus HOM05D005965 ORTHO05D007283 1.1e-137 494.2 476 57.1
Glyma.19G233800 Glycine max HOM05D005965 ORTHO05D007283 1.9e-137 493.4 477 57.4
PGR031G2641 Punica granatum HOM05D005965 ORTHO05D007283 3.2e-137 492.7 472 56.1
CARHR079860 Cardamine hirsuta HOM05D005965 ORTHO05D007283 1.2e-136 490.7 280 87.9
ECA246G4331 Erigeron canadensis HOM05D005965 ORTHO05D007283 2.7e-136 489.6 473 57.5
Migut.G01001 Erythranthe guttata HOM05D005965 ORTHO05D007283 3.5e-136 489.2 478 56.5
PSO151G0070 Papaver somniferum HOM05D005965 ORTHO05D007283 1.0e-135 487.6 482 57.5
vmacro19747 Vaccinium macrocarpon HOM05D005965 ORTHO05D007283 1.3e-135 487.3 412 61.4
Hund07094 Selenicereus undatus HOM05D005965 ORTHO05D007283 5.1e-135 485.3 482 56.0
Phvul.006G090000 Phaseolus vulgaris HOM05D005965 ORTHO05D007283 2.5e-134 483.0 480 55.4
FvH4_6g06510 Fragaria vesca HOM05D005965 ORTHO05D007283 4.3e-134 482.3 418 62.4
FAN05G3147 Fragaria x ananassa HOM05D005965 ORTHO05D007283 9.6e-134 481.1 414 62.8
unitig_699.g19668 Utricularia gibba HOM05D005965 ORTHO05D007283 2.1e-133 479.9 469 54.4
Cc02_g33090 Coffea canephora HOM05D005965 ORTHO05D007283 3.7e-133 479.2 472 56.1
Nitab4.5_0001129g0130 Nicotiana tabacum HOM05D005965 ORTHO05D007283 1.4e-132 477.2 481 54.3
Peaxi162Scf00949g00112 Petunia axillaris HOM05D005965 ORTHO05D007283 4.0e-132 475.7 469 54.2
MBI19_g29225_MAGBIO Magnolia biondii HOM05D005965 ORTHO05D007283 6.9e-132 474.9 482 55.4
Sopen10g013470 Solanum pennellii HOM05D005965 ORTHO05D007283 9.0e-132 474.6 466 54.5
PGSC0003DMG400007478 Solanum tuberosum HOM05D005965 ORTHO05D007283 1.2e-131 474.2 466 54.5
Solyc10g044780.2 Solanum lycopersicum HOM05D005965 ORTHO05D007283 2.0e-131 473.4 466 54.3
Lj9A144T46 Lonicera japonica HOM05D005965 ORTHO05D007283 1.7e-130 470.3 363 65.0
Ah.04g161100 Amaranthus hybridus HOM05D005965 ORTHO05D007283 4.9e-130 468.8 476 54.8
CAN.G1.32 Capsicum annuum HOM05D005965 ORTHO05D007283 2.5e-129 466.5 467 54.4
Ca_05803_v3 Cicer arietinum L. HOM05D005965 ORTHO05D007283 5.5e-129 465.3 433 58.2
AUR62000770 Chenopodium quinoa HOM05D005965 ORTHO05D007283 6.0e-128 461.8 425 59.1
HanXRQChr03g0072671 Helianthus annuus HOM05D005965 ORTHO05D007283 7.9e-128 461.5 476 53.8
Eucgr.H04558 Eucalyptus grandis HOM05D005965 ORTHO05D007283 8.7e-127 458.0 421 59.1
SGA_v2.0_scaffold172G38992 Striga asiatica HOM05D005965 ORTHO05D007283 1.3e-125 454.1 472 53.4
Migut.G01092 Erythranthe guttata HOM05D005965 ORTHO05D007283 1.6e-125 453.8 365 61.9
Hma1.2p1_1292F.1_g273680 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 1.6e-125 453.8 337 67.7
Lsat_1_v5_gn_9_124801 Lactuca sativa HOM05D005965 ORTHO05D007283 4.8e-125 452.2 483 52.8
HanXRQChr03g0072661 Helianthus annuus HOM05D005965 ORTHO05D007283 4.1e-124 449.1 498 51.0
HPP92_000400 Vanilla planifolia HOM05D005965 ORTHO05D007283 2.3e-119 433.3 481 50.7
HPP92_000403 Vanilla planifolia HOM05D005965 ORTHO05D007283 1.9e-118 430.3 481 50.3
BraA05t19070Z Brassica rapa HOM05D005965 ORTHO05D007283 7.4e-118 428.3 270 81.9
Thecc.05G312500 Theobroma cacao HOM05D005965 ORTHO05D007283 9.7e-118 427.9 372 62.4
ATR0796G244 Amborella trichopoda HOM05D005965 ORTHO05D007283 1.5e-115 420.6 475 49.1
AUR62005199 Chenopodium quinoa HOM05D005965 ORTHO05D007283 2.2e-114 416.8 418 54.8
SHI18108 Sapria himalayana HOM05D005965 ORTHO05D007283 4.2e-113 412.5 320 65.6
Migut.G01320 Erythranthe guttata HOM05D005965 ORTHO05D007283 2.0e-110 403.7 366 56.8
Haze_04145 Corylus avellana HOM05D005965 ORTHO05D007283 1.8e-108 397.1 280 68.9
SEGI_33282 Sequoiadendron giganteum HOM05D005965 ORTHO05D007283 5.3e-108 395.6 499 47.3
MELO3C031536.2 Cucumis melo HOM05D005965 ORTHO05D007283 9.1e-108 394.8 371 57.1
Eucgr.H04576 Eucalyptus grandis HOM05D005965 ORTHO05D007283 4.4e-102 375.9 278 64.7
CDE02G1352 Ceratophyllum demersum HOM05D005965 ORTHO05D007283 1.9e-97 360.5 428 50.2
Eucgr.H04573 Eucalyptus grandis HOM05D005965 ORTHO05D007283 4.7e-96 355.9 257 65.8
Os03g0345100 Oryza sativa ssp. japonica HOM05D005965 ORTHO05D007283 2.6e-94 350.1 478 45.6
Mapoly0078s0014 Marchantia polymorpha HOM05D005965 ORTHO05D007283 7.2e-89 332.0 377 47.2
Pp3c7_570 Physcomitrium patens HOM05D005965 ORTHO05D007283 1.6e-88 330.9 378 45.5
SMO134G0282 Selaginella moellendorffii HOM05D005965 ORTHO05D007283 2.7e-88 330.1 368 47.6
Pp3c15_2650 Physcomitrium patens HOM05D005965 ORTHO05D007283 8.0e-88 328.6 382 46.3
Eucgr.H04556 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.4e-87 327.8 314 55.1
Nitab4.5_0001057g0090 Nicotiana tabacum HOM05D005965 ORTHO05D007283 3.4e-86 323.2 354 51.4
SHI32441 Sapria himalayana HOM05D005965 ORTHO05D007283 5.0e-82 309.3 317 54.6
CBR_g180 Chara braunii HOM05D005965 ORTHO05D007283 3.0e-79 300.1 426 44.1
Zm00001eb016590 Zea mays HOM05D005965 ORTHO05D007283 3.0e-79 300.1 319 51.4
CARHR079870 Cardamine hirsuta HOM05D005965 ORTHO05D007283 7.3e-73 278.9 186 79.0
AL3G16050 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 1.6e-67 261.2 298 50.7
Eucgr.H04569 Eucalyptus grandis HOM05D005965 ORTHO05D007283 3.4e-62 243.4 479 38.6
Eucgr.H04571 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.0e-58 231.9 467 37.9
Thhalv10022144m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 4.9e-53 213.0 363 42.1
Psat6g098120 Pisum sativum HOM05D005965 ORTHO05D007283 3.5e-51 206.8 164 63.4
Thecc.07G184800 Theobroma cacao HOM05D005965 ORTHO05D007283 3.3e-49 200.3 259 45.9
Thecc.07G184700 Theobroma cacao HOM05D005965 ORTHO05D007283 1.3e-32 145.2 193 51.3
MCO01G074 Micromonas commoda HOM05D005965 ORTHO05D007283 2.4e-31 141.0 355 29.3
QL03p021253 Quercus lobata HOM05D005965 ORTHO05D007283 4.0e-31 140.2 93 68.8
TAR633G2454 Trochodendron aralioides HOM05D005965 ORTHO05D007283 4.2e-28 130.2 134 53.7
PSO017G4250 Papaver somniferum HOM05D005965 ORTHO05D007283 7.1e-28 129.4 122 53.3
Haze_04144 Corylus avellana HOM05D005965 ORTHO05D007283 1.8e-23 114.8 133 56.4
Cre16.g682950 Chlamydomonas reinhardtii HOM05D005965 ORTHO05D007283 6.9e-23 112.8 218 34.9
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 6.9e-23 112.8 60 78.3
Eucgr.H04575 Eucalyptus grandis HOM05D005965 ORTHO05D007283 2.0e-22 111.3 125 46.4
TWI56G1489 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 3.1e-15 87.4 73 60.3
Nitab4.5_0000524g0030 Nicotiana tabacum HOM05D005965 ORTHO05D007283 7.1e-12 76.3 208 34.1
C03p41530 Brassica napus HOM05D033945 ORTHO05D033616 1.8e-07 61.6 47 66.0
BolC3t16434H Brassica oleracea HOM05D033945 ORTHO05D033616 1.8e-07 61.6 47 66.0


User provided reference genes

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