Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g30146 Brassica carinata HOM05D000520 ORTHO05D012153 1.4e-36 156.8 159 100.0
A05p42360 Brassica napus HOM05D000520 ORTHO05D012153 1.3e-26 123.6 168 80.4
BraA05t23015Z Brassica rapa HOM05D000520 ORTHO05D012153 1.3e-26 123.6 168 80.4
CARHR079560 Cardamine hirsuta HOM05D000520 ORTHO05D012153 1.5e-25 120.2 108 96.3
BcaC05g30010 Brassica carinata HOM05D000520 ORTHO05D012153 3.3e-25 119.0 169 79.9
C05p61970 Brassica napus HOM05D000520 ORTHO05D012153 3.3e-25 119.0 169 79.9
AT3G05220 Arabidopsis thaliana HOM05D000520 ORTHO05D012153 9.6e-25 117.5 110 90.0
AL3G15650 Arabidopsis lyrata HOM05D000520 ORTHO05D012153 4.7e-24 115.2 108 96.3
Carub.0003s0447 Capsella rubella HOM05D000520 ORTHO05D012153 1.1e-23 114.0 108 96.3
BolC5t34857H Brassica oleracea HOM05D000520 ORTHO05D012153 2.4e-23 112.8 166 79.5
BcaB04g19277 Brassica carinata HOM05D000520 ORTHO05D012153 1.2e-22 110.5 162 69.8
C03p41430 Brassica napus HOM05D000520 ORTHO05D012153 1.2e-22 110.5 111 79.3
BraA03t12577Z Brassica rapa HOM05D000520 ORTHO05D012153 1.2e-22 110.5 111 80.2
Aa31LG5G15600 Aethionema arabicum HOM05D000520 ORTHO05D012153 3.4e-22 109.0 105 70.5
BolC1t05705H Brassica oleracea HOM05D000520 ORTHO05D012153 4.9e-21 105.1 106 91.5
Thhalv10020397m.g Eutrema salsugineum HOM05D000520 ORTHO05D012153 1.9e-20 103.2 114 90.4
BNapus_Darmor_BZH_scaffold_114p00230 Brassica napus HOM05D000520 ORTHO05D012153 4.2e-20 102.1 157 75.8
BraSC132t45515Z Brassica rapa HOM05D000520 ORTHO05D012153 4.2e-20 102.1 157 73.9
BcaB04g21451 Brassica carinata HOM05D000520 ORTHO05D012153 1.6e-19 100.1 108 88.9
THA.LOC104821878 Tarenaya hassleriana HOM05D000520 ORTHO05D012153 3.9e-18 95.5 47 89.4
THA.LOC104818680 Tarenaya hassleriana HOM05D000520 ORTHO05D012153 2.6e-14 82.8 119 64.7
A03p34030 Brassica napus HOM05D000520 ORTHO05D012153 3.8e-13 79.0 111 70.3
QL03p004617 Quercus lobata HOM05D000520 ORTHO05D000399 3.2e-12 75.9 50 72.0
Atru.chr13.1890 Acer truncatum HOM05D000520 ORTHO05D000399 1.6e-11 73.6 49 71.4
Cpa.g.sc48.23 Carica papaya HOM05D000520 ORTHO05D000399 2.7e-11 72.8 50 72.0
Atru.chr2.464 Acer truncatum HOM05D000520 ORTHO05D000399 3.5e-11 72.4 47 74.5
ClCG03G016850 Citrullus lanatus HOM05D000520 ORTHO05D000399 3.5e-11 72.4 50 70.0
CsaV3_1G039090 Cucumis sativus L. HOM05D000520 ORTHO05D000399 3.5e-11 72.4 50 70.0
Sed0025184 Sechium edule HOM05D000520 ORTHO05D000399 3.5e-11 72.4 51 68.6
Sed0003129 Sechium edule HOM05D000520 ORTHO05D000399 1.0e-10 70.9 50 68.0
Aqoxy2G03274 Aquilegia oxysepala HOM05D000520 ORTHO05D000399 1.3e-10 70.5 49 67.3
Nitab4.5_0001643g0070 Nicotiana tabacum HOM05D000520 ORTHO05D000399 2.3e-10 69.7 51 70.6
Sabra05G0036800 Salix brachista HOM05D000520 ORTHO05D000399 2.3e-10 69.7 50 62.0
CiPaw.07G015400 Carya illinoinensis HOM05D000520 ORTHO05D000399 3.0e-10 69.3 52 65.4
Potri.005G036300 Populus trichocarpa HOM05D000520 ORTHO05D000399 3.9e-10 68.9 50 60.0
THA.LOC104803110 Tarenaya hassleriana HOM05D000520 ORTHO05D012153 5.1e-10 68.6 37 81.1
CAN.G1132.7 Capsicum annuum HOM05D000520 ORTHO05D000399 8.7e-10 67.8 51 68.6
Manes.08G122800 Manihot esculenta HOM05D000520 ORTHO05D000399 8.7e-10 67.8 51 64.7
Nitab4.5_0002031g0100 Nicotiana tabacum HOM05D000520 ORTHO05D000399 1.1e-09 67.4 50 68.0
Glyma.07G257300 Glycine max HOM05D000520 ORTHO05D000399 2.5e-09 66.2 50 68.0
Glyma.17G016800 Glycine max HOM05D000520 ORTHO05D000399 2.5e-09 66.2 50 68.0
Dinv40265 Davidia involucrata HOM05D000520 ORTHO05D000399 4.3e-09 65.5 115 40.0
Potri.013G025300 Populus trichocarpa HOM05D000520 ORTHO05D000399 5.6e-09 65.1 50 66.0
QL03p004799 Quercus lobata HOM05D002900 ORTHO05D003238 5.6e-09 65.1 46 69.6
Duzib128G1162 Durio zibethinus HOM05D000520 ORTHO05D000399 7.3e-09 64.7 48 64.6
Eucgr.B01997 Eucalyptus grandis HOM05D000520 ORTHO05D000399 7.3e-09 64.7 49 63.3
Phvul.003G092500 Phaseolus vulgaris HOM05D000520 ORTHO05D000399 7.3e-09 64.7 50 66.0
VMungo1215G0488 Vigna mungo HOM05D000520 ORTHO05D000399 7.3e-09 64.7 50 66.0
PGR006G0001 Punica granatum HOM05D000520 ORTHO05D000399 9.6e-09 64.3 51 64.7
PGR083G1402 Punica granatum HOM05D000520 ORTHO05D000399 9.6e-09 64.3 51 64.7
Ciclev10000747m.g Citrus clementina HOM05D000520 ORTHO05D000399 1.3e-08 63.9 50 64.0
Lj3C779T2 Lonicera japonica HOM05D000520 ORTHO05D000399 1.3e-08 63.9 57 56.1
CSS0048661 Camellia sinensis var. sinensis HOM05D000520 ORTHO05D000399 1.6e-08 63.5 50 58.0
Gohir.A11G263600 Gossypium hirsutum HOM05D000520 ORTHO05D000399 1.6e-08 63.5 49 67.3
Gorai.007G295300 Gossypium raimondii HOM05D000520 ORTHO05D000399 1.6e-08 63.5 49 67.3
Sabra13G0026500 Salix brachista HOM05D000520 ORTHO05D000399 1.6e-08 63.5 52 61.5
Duzib106G1970 Durio zibethinus HOM05D000520 ORTHO05D000399 2.1e-08 63.2 48 62.5
Lsat_1_v5_gn_5_76560 Lactuca sativa HOM05D000520 ORTHO05D000399 2.1e-08 63.2 59 54.2
FvH4_4g14520 Fragaria vesca HOM05D000520 ORTHO05D000399 2.8e-08 62.8 53 66.0
FAN12G0085 Fragaria x ananassa HOM05D000520 ORTHO05D000399 2.8e-08 62.8 53 66.0
CANSAT54G1951 Cannabis sativa HOM05D000520 ORTHO05D000399 3.6e-08 62.4 49 65.3
Hma1.2p1_1362F.1_g278200 Hydrangea macrophylla HOM05D000520 ORTHO05D000399 6.2e-08 61.6 50 60.0
PSO170G1749 Papaver somniferum HOM05D000520 ORTHO05D000399 6.2e-08 61.6 46 69.6
PSO407G0131 Papaver somniferum HOM05D000520 ORTHO05D000399 6.2e-08 61.6 46 69.6
HanXRQChr10g0310421 Helianthus annuus HOM05D000520 ORTHO05D000399 8.1e-08 61.2 61 52.5
Sed0010325 Sechium edule HOM05D000520 ORTHO05D000399 8.1e-08 61.2 42 69.0
Thecc.05G306700 Theobroma cacao HOM05D000520 ORTHO05D000399 1.1e-07 60.8 50 60.0
TAR633G0222 Trochodendron aralioides HOM05D002055 ORTHO05D002120 1.4e-07 60.5 50 62.0
DCAR_027154 Daucus carota HOM05D000520 ORTHO05D000399 1.8e-07 60.1 51 62.7
Nn1g02168 Nelumbo nucifera HOM05D000520 ORTHO05D000399 1.8e-07 60.1 50 58.0
Cc00_g13310 Coffea canephora HOM05D000520 ORTHO05D000399 2.4e-07 59.7 49 63.3
ECA234G3541 Erigeron canadensis HOM05D000520 ORTHO05D000399 2.4e-07 59.7 56 53.6
FAN22G0660 Fragaria x ananassa HOM05D000520 ORTHO05D000399 2.4e-07 59.7 53 62.3
Gohir.A08G211600 Gossypium hirsutum HOM05D000520 ORTHO05D000399 2.4e-07 59.7 54 53.7
Gohir.D08G228300 Gossypium hirsutum HOM05D000520 ORTHO05D000399 2.4e-07 59.7 54 53.7
CSS0050336 Camellia sinensis var. sinensis HOM05D000520 ORTHO05D000399 3.1e-07 59.3 46 60.9
MD16G1184300 Malus domestica HOM05D000520 ORTHO05D000399 3.1e-07 59.3 55 54.5
Medtr4g117140 Medicago truncatula HOM05D000520 ORTHO05D000399 4.0e-07 58.9 44 68.2
Ca_10099_v3 Cicer arietinum L. HOM05D000520 ORTHO05D000399 6.9e-07 58.2 49 61.2
Gorai.004G242600 Gossypium raimondii HOM05D000520 ORTHO05D000399 6.9e-07 58.2 54 51.9
Psat4g031280 Pisum sativum HOM05D000520 ORTHO05D000399 6.9e-07 58.2 44 68.2
vmacro15303 Vaccinium macrocarpon HOM05D000520 ORTHO05D000399 6.9e-07 58.2 52 55.8
DCAR_029431 Daucus carota HOM05D000520 ORTHO05D000399 9.0e-07 57.8 48 56.2
Manes.09G164500 Manihot esculenta HOM05D000520 ORTHO05D000399 9.0e-07 57.8 47 61.7
COL.COLO4_13507 Corchorus olitorius HOM05D000416 ORTHO05D000322 1.2e-06 57.4 49 57.1
Glyma.15G104400 Glycine max HOM05D000520 ORTHO05D000399 1.2e-06 57.4 52 59.6
Lalb_Chr06g0167791 Lupinus albus HOM05D000520 ORTHO05D000399 1.2e-06 57.4 49 61.2
Medtr4g117220 Medicago truncatula HOM05D000520 ORTHO05D000399 1.2e-06 57.4 44 68.2
Glyma.03G239800 Glycine max HOM05D000520 ORTHO05D000399 1.5e-06 57.0 44 63.6
PGR031G0428 Punica granatum HOM05D000520 ORTHO05D000399 1.5e-06 57.0 49 61.2
Rhsim07G0180900 Rhododendron simsii HOM05D000520 ORTHO05D000399 1.5e-06 57.0 50 58.0
VMungo0540G0465 Vigna mungo HOM05D000520 ORTHO05D000399 1.5e-06 57.0 53 58.5
CSS0016617 Camellia sinensis var. sinensis HOM05D000520 ORTHO05D000399 2.0e-06 56.6 55 52.7
Lj4g0000467 Lotus japonicus HOM05D000520 ORTHO05D000399 2.0e-06 56.6 40 67.5
Lj5g0006582 Lotus japonicus HOM05D000520 ORTHO05D000399 2.0e-06 56.6 43 62.8
Ciclev10004709m.g Citrus clementina HOM05D000520 ORTHO05D000399 2.6e-06 56.2 58 51.7
DCAR_029173 Daucus carota HOM05D000520 ORTHO05D000399 2.6e-06 56.2 48 54.2
DCAR_029174 Daucus carota HOM05D000301 ORTHO05D000303 2.6e-06 56.2 48 54.2
ECA240G2947 Erigeron canadensis HOM05D000520 ORTHO05D000399 2.6e-06 56.2 56 57.1
RcHm_v2.0_Chr3g0454261 Rosa chinensis HOM05D000520 ORTHO05D000399 2.6e-06 56.2 51 58.8
CSS0042599 Camellia sinensis var. sinensis HOM05D000520 ORTHO05D000399 3.4e-06 55.8 46 58.7
Glyma.13G208400 Glycine max HOM05D000520 ORTHO05D000399 3.4e-06 55.8 53 56.6
Solyc01g098760.4 Solanum lycopersicum HOM05D000520 ORTHO05D000399 5.8e-06 55.1 58 53.4
Sopen01g042290 Solanum pennellii HOM05D000520 ORTHO05D000399 5.8e-06 55.1 58 53.4
PGSC0003DMG400028581 Solanum tuberosum HOM05D000520 ORTHO05D000399 5.8e-06 55.1 58 53.4
TAR362G0969 Trochodendron aralioides HOM05D000520 ORTHO05D000399 5.8e-06 55.1 50 56.0
AUR62038213 Chenopodium quinoa HOM05D000520 ORTHO05D000399 7.6e-06 54.7 51 58.8
Lalb_Chr12g0196211 Lupinus albus HOM05D000520 ORTHO05D000399 9.9e-06 54.3 48 58.3
Lalb_Chr21g0310771 Lupinus albus HOM05D000520 ORTHO05D000399 9.9e-06 54.3 49 59.2
Phvul.006G153400 Phaseolus vulgaris HOM05D000520 ORTHO05D000399 9.9e-06 54.3 53 54.7


User provided reference genes

Program Settings