Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g30122 Brassica carinata HOM05D017090 ORTHO05D018449 1.4e-130 469.5 225 100.0
BolC5t34839H Brassica oleracea HOM05D017090 ORTHO05D018449 9.1e-122 440.3 258 84.9
AL3G16050 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 2.2e-30 136.7 205 37.6
CARHR079810 Cardamine hirsuta HOM05D017090 ORTHO05D018449 4.1e-29 132.5 218 39.0
AL304U10020 Arabidopsis lyrata HOM05D017090 ORTHO05D018449 3.2e-26 122.9 224 36.2
AL3G16000 Arabidopsis lyrata HOM05D017090 ORTHO05D018449 1.1e-23 114.4 84 58.3
BolC5t34837H Brassica oleracea HOM05D017090 ORTHO05D018449 5.9e-20 102.1 50 96.0
BolC5t34750H Brassica oleracea HOM05D009118 ORTHO05D011494 5.7e-15 85.5 204 28.4
AL3G17230 Arabidopsis lyrata HOM05D009118 ORTHO05D011494 9.7e-15 84.7 246 28.0
A10p02270 Brassica napus HOM05D009118 ORTHO05D011494 2.2e-14 83.6 205 28.3
Thhalv10009679m.g Eutrema salsugineum HOM05D009118 ORTHO05D011494 4.8e-14 82.4 170 30.0
AL3G17210 Arabidopsis lyrata HOM05D009118 ORTHO05D011494 1.4e-13 80.9 202 27.7
BraA10t42493Z Brassica rapa HOM05D009118 ORTHO05D011494 2.4e-13 80.1 187 27.8
A01p29290 Brassica napus HOM05D017090 ORTHO05D018449 9.1e-13 78.2 113 44.2
AT1G03720 Arabidopsis thaliana HOM05D009118 ORTHO05D011494 1.3e-11 74.3 184 25.5
AL304U10040 Arabidopsis lyrata HOM05D017090 ORTHO05D018449 1.7e-11 73.9 143 32.2
AL6G28180 Arabidopsis lyrata HOM05D009118 ORTHO05D011494 1.7e-11 73.9 87 40.2
AL1G13260 Arabidopsis lyrata HOM05D009118 ORTHO05D011494 2.2e-11 73.6 255 24.7
Carub.0006s1526 Capsella rubella HOM05D009118 ORTHO05D011494 1.1e-10 71.2 142 26.1
C08p14910 Brassica napus HOM05D009118 ORTHO05D011494 2.7e-09 66.6 87 34.5
AT5G17140 Arabidopsis thaliana HOM05D009118 ORTHO05D011494 4.7e-09 65.9 60 46.7
AL6G28100 Arabidopsis lyrata HOM05D009118 ORTHO05D011494 6.1e-09 65.5 87 32.2
THA.LOC104809074 Tarenaya hassleriana HOM05D000069 ORTHO05D025459 1.1e-07 61.2 256 23.8
A08p03870 Brassica napus HOM05D000069 ORTHO05D000060 2.0e-07 60.5 209 25.8
BolC3t13441H Brassica oleracea HOM05D009118 ORTHO05D011494 2.6e-07 60.1 87 33.3
Phvul.006G176920 Phaseolus vulgaris HOM05D000069 ORTHO05D000060 2.6e-07 60.1 185 24.3
QL10p029934 Quercus lobata HOM05D000069 ORTHO05D011390 3.3e-07 59.7 85 34.1
AT5G17080 Arabidopsis thaliana HOM05D009118 ORTHO05D011494 4.4e-07 59.3 114 28.1
BolC3t13438H Brassica oleracea HOM05D009118 ORTHO05D011494 4.4e-07 59.3 87 33.3
BcaB01g05231 Brassica carinata HOM05D009118 ORTHO05D011494 1.7e-06 57.4 89 33.7
C03p09400 Brassica napus HOM05D009118 ORTHO05D011494 1.7e-06 57.4 89 33.7
BolC3t13434H Brassica oleracea HOM05D009118 ORTHO05D011494 1.7e-06 57.4 89 33.7
QL10p030265 Quercus lobata HOM05D000069 ORTHO05D011390 1.7e-06 57.4 105 31.4
BcaB01g04957 Brassica carinata HOM05D009118 ORTHO05D011494 2.2e-06 57.0 88 31.8
Duzib168G1950 Durio zibethinus HOM05D000069 ORTHO05D011390 2.2e-06 57.0 80 38.8
vmacro11318 Vaccinium macrocarpon HOM05D000474 ORTHO05D006736 2.2e-06 57.0 76 39.5
BcaB06g28105 Brassica carinata HOM05D000069 ORTHO05D000060 2.8e-06 56.6 181 25.4
CAN.G1286.1 Capsicum annuum HOM05D000069 ORTHO05D000060 2.8e-06 56.6 193 23.8
Medtr2g015850 Medicago truncatula HOM05D000069 ORTHO05D000060 3.7e-06 56.2 90 32.2
BolC3t13443H Brassica oleracea HOM05D009118 ORTHO05D011494 4.8e-06 55.8 86 29.1
BraA03t10432Z Brassica rapa HOM05D000069 ORTHO05D021930 6.3e-06 55.5 157 24.8
BraA08t32417Z Brassica rapa HOM05D000069 ORTHO05D000060 6.3e-06 55.5 194 25.3


User provided reference genes

Program Settings