Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g30118 Brassica carinata HOM05D005965 ORTHO05D007283 4.8e-252 874.0 439 100.0
BolC5t34833H Brassica oleracea HOM05D005965 ORTHO05D007283 2.4e-243 845.1 456 95.0
C05p61750 Brassica napus HOM05D005965 ORTHO05D007283 4.5e-242 840.9 441 97.1
Thhalv10020753m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 1.4e-238 829.3 439 95.0
BcaC05g30164 Brassica carinata HOM05D005965 ORTHO05D007283 5.2e-238 827.4 465 91.0
Sp3g04310 Schrenkiella parvula HOM05D005965 ORTHO05D007283 1.8e-230 802.4 439 91.6
Carub.0003s0477 Capsella rubella HOM05D005965 ORTHO05D007283 1.8e-222 775.8 439 87.7
AL3G16080 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 3.4e-221 771.5 441 87.5
AT3G05480 Arabidopsis thaliana HOM05D005965 ORTHO05D007283 1.7e-220 769.2 441 87.3
THA.LOC104818713 Tarenaya hassleriana HOM05D005965 ORTHO05D007283 9.5e-192 673.7 449 76.6
BraA05t23035Z Brassica rapa HOM05D005965 ORTHO05D007283 2.9e-188 662.1 353 94.9
Aa31LG5G15920 Aethionema arabicum HOM05D005965 ORTHO05D007283 5.4e-187 657.9 383 85.6
Gohir.D11G277600 Gossypium hirsutum HOM05D005965 ORTHO05D007283 2.5e-160 569.3 451 65.4
CSS0001755 Camellia sinensis var. sinensis HOM05D005965 ORTHO05D007283 5.6e-160 568.2 445 65.4
MD04G1201200 Malus domestica HOM05D005965 ORTHO05D007283 1.3e-159 567.0 450 65.3
Potri.013G017500 Populus trichocarpa HOM05D005965 ORTHO05D007283 2.4e-158 562.8 453 64.0
Prupe.6G321300 Prunus persica HOM05D005965 ORTHO05D007283 2.4e-158 562.8 453 64.7
Gorai.007G299800 Gossypium raimondii HOM05D005965 ORTHO05D007283 9.0e-158 560.8 457 64.6
Atru.chr2.26 Acer truncatum HOM05D005965 ORTHO05D007283 1.5e-157 560.1 451 65.4
GSVIVG01031150001 Vitis vinifera HOM05D005965 ORTHO05D007283 1.5e-157 560.1 445 65.2
CiPaw.07G021000 Carya illinoinensis HOM05D005965 ORTHO05D007283 3.4e-157 558.9 451 64.1
Cpa.g.sc48.91 Carica papaya HOM05D005965 ORTHO05D007283 1.0e-156 557.4 452 66.4
Sabra13G0020500 Salix brachista HOM05D005965 ORTHO05D007283 1.0e-156 557.4 428 65.7
Ciclev10001128m.g Citrus clementina HOM05D005965 ORTHO05D007283 3.8e-156 555.4 448 64.1
Sabra13G0016500 Salix brachista HOM05D005965 ORTHO05D007283 1.4e-155 553.5 455 63.1
Cfa006624 Carpinus fangiana HOM05D005965 ORTHO05D007283 3.2e-155 552.4 454 64.3
Rhsim05G0139400 Rhododendron simsii HOM05D005965 ORTHO05D007283 3.5e-154 548.9 486 59.5
QL03p021207 Quercus lobata HOM05D005965 ORTHO05D007283 1.3e-153 547.0 453 62.3
Actinidia21493 Actinidia chinensis HOM05D005965 ORTHO05D007283 2.2e-151 539.7 448 61.2
Gohir.A11G267700 Gossypium hirsutum HOM05D005965 ORTHO05D007283 1.1e-150 537.3 450 63.6
TAR362G0609 Trochodendron aralioides HOM05D005965 ORTHO05D007283 1.4e-150 537.0 450 62.9
Lj1g0019406 Lotus japonicus HOM05D005965 ORTHO05D007283 1.8e-150 536.6 451 63.0
DCAR_003352 Daucus carota HOM05D005965 ORTHO05D007283 3.1e-150 535.8 467 59.5
Manes.08G118100 Manihot esculenta HOM05D005965 ORTHO05D007283 1.5e-149 533.5 452 61.7
arahy.Tifrunner.gnm1.ann1.DHC6FB Arachis hypogaea HOM05D005965 ORTHO05D007283 3.4e-149 532.3 438 63.9
Oeu043357.2 Olea europaea HOM05D005965 ORTHO05D007283 3.4e-149 532.3 448 62.5
FAN14G0885 Fragaria x ananassa HOM05D005965 ORTHO05D007283 2.9e-148 529.3 452 61.5
TWI12G0462 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 5.0e-148 528.5 450 63.6
Sed0024378 Sechium edule HOM05D005965 ORTHO05D007283 6.5e-148 528.1 455 61.1
arahy.Tifrunner.gnm1.ann1.79NSX3 Arachis hypogaea HOM05D005965 ORTHO05D007283 8.5e-148 527.7 438 63.7
Medtr7g113100 Medicago truncatula HOM05D005965 ORTHO05D007283 1.1e-147 527.3 450 61.8
CsaV3_2G006620 Cucumis sativus L. HOM05D005965 ORTHO05D007283 5.5e-147 525.0 457 60.8
Nn3g21434 Nelumbo nucifera HOM05D005965 ORTHO05D007283 9.4e-147 524.2 450 61.3
Sc16g0008610 Simmondsia chinensis HOM05D005965 ORTHO05D007283 1.2e-146 523.9 446 60.8
COL.COLO4_10514 Corchorus olitorius HOM05D005965 ORTHO05D007283 1.6e-146 523.5 394 68.0
TPR.G33209 Trifolium pratense HOM05D005965 ORTHO05D007283 2.3e-145 519.6 451 60.5
EL10Ac4g09921 Beta vulgaris HOM05D005965 ORTHO05D007283 3.0e-145 519.2 449 59.7
RcHm_v2.0_Chr3g0455661 Rosa chinensis HOM05D005965 ORTHO05D007283 3.9e-145 518.8 452 61.1
Dinv40342 Davidia involucrata HOM05D005965 ORTHO05D007283 6.7e-145 518.1 338 73.7
ClCG02G015450 Citrullus lanatus HOM05D005965 ORTHO05D007283 8.8e-145 517.7 452 60.8
MSTRG.20421 Avicennia marina HOM05D005965 ORTHO05D007283 1.1e-144 517.3 450 60.4
Psat0s4314g0040 Pisum sativum HOM05D005965 ORTHO05D007283 1.5e-144 516.9 475 58.7
Aqoxy2G02987 Aquilegia oxysepala HOM05D005965 ORTHO05D007283 2.5e-144 516.2 447 61.7
Eucgr.H04531 Eucalyptus grandis HOM05D005965 ORTHO05D007283 4.3e-144 515.4 452 60.8
Glyma.03G236100 Glycine max HOM05D005965 ORTHO05D007283 7.4e-144 514.6 453 60.7
Lalb_Chr18g0045721 Lupinus albus HOM05D005965 ORTHO05D007283 1.7e-143 513.5 450 60.7
VMungo0540G0496 Vigna mungo HOM05D005965 ORTHO05D007283 1.7e-143 513.5 452 59.7
Glyma.19G233800 Glycine max HOM05D005965 ORTHO05D007283 8.2e-143 511.1 451 60.5
ECA246G4331 Erigeron canadensis HOM05D005965 ORTHO05D007283 1.8e-142 510.0 446 61.9
PGR031G2641 Punica granatum HOM05D005965 ORTHO05D007283 4.1e-142 508.8 446 59.4
PSO151G0070 Papaver somniferum HOM05D005965 ORTHO05D007283 2.0e-141 506.5 455 60.2
Hma1.2p1_1292F.1_g273670 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 2.6e-141 506.1 339 71.4
FAN02G0246 Fragaria x ananassa HOM05D005965 ORTHO05D007283 3.4e-141 505.8 453 60.0
CARHR079860 Cardamine hirsuta HOM05D005965 ORTHO05D007283 9.4e-139 497.7 255 94.9
Migut.G01001 Erythranthe guttata HOM05D005965 ORTHO05D007283 1.2e-138 497.3 454 58.4
FvH4_6g06510 Fragaria vesca HOM05D005965 ORTHO05D007283 2.1e-138 496.5 390 65.1
FAN05G3147 Fragaria x ananassa HOM05D005965 ORTHO05D007283 4.7e-138 495.4 386 65.5
Cc02_g33090 Coffea canephora HOM05D005965 ORTHO05D007283 1.0e-137 494.2 444 60.1
MBI19_g29225_MAGBIO Magnolia biondii HOM05D005965 ORTHO05D007283 1.0e-137 494.2 455 58.2
Hund07094 Selenicereus undatus HOM05D005965 ORTHO05D007283 1.8e-137 493.4 457 58.2
Phvul.006G090000 Phaseolus vulgaris HOM05D005965 ORTHO05D007283 3.0e-137 492.7 454 57.7
Sopen10g013470 Solanum pennellii HOM05D005965 ORTHO05D007283 1.3e-135 487.3 441 56.9
PGSC0003DMG400007478 Solanum tuberosum HOM05D005965 ORTHO05D007283 2.2e-135 486.5 441 57.1
unitig_699.g19668 Utricularia gibba HOM05D005965 ORTHO05D007283 2.2e-135 486.5 453 56.7
Peaxi162Scf00949g00112 Petunia axillaris HOM05D005965 ORTHO05D007283 2.8e-135 486.1 443 57.1
vmacro19747 Vaccinium macrocarpon HOM05D005965 ORTHO05D007283 6.3e-135 485.0 411 60.6
Solyc10g044780.2 Solanum lycopersicum HOM05D005965 ORTHO05D007283 8.2e-135 484.6 441 56.7
HanXRQChr03g0072671 Helianthus annuus HOM05D005965 ORTHO05D007283 1.4e-134 483.8 448 57.1
Lj9A144T46 Lonicera japonica HOM05D005965 ORTHO05D007283 5.3e-134 481.9 338 68.9
Ca_05803_v3 Cicer arietinum L. HOM05D005965 ORTHO05D007283 7.0e-134 481.5 407 61.7
Nitab4.5_0001129g0130 Nicotiana tabacum HOM05D005965 ORTHO05D007283 1.2e-133 480.7 456 57.0
CAN.G1.32 Capsicum annuum HOM05D005965 ORTHO05D007283 1.5e-133 480.3 442 56.8
Ah.04g161100 Amaranthus hybridus HOM05D005965 ORTHO05D007283 2.0e-133 479.9 450 57.1
AUR62000770 Chenopodium quinoa HOM05D005965 ORTHO05D007283 1.0e-132 477.6 399 62.2
HanXRQChr03g0072661 Helianthus annuus HOM05D005965 ORTHO05D007283 9.4e-131 471.1 469 54.4
Lsat_1_v5_gn_9_124801 Lactuca sativa HOM05D005965 ORTHO05D007283 3.6e-130 469.2 458 55.9
Migut.G01092 Erythranthe guttata HOM05D005965 ORTHO05D007283 3.0e-129 466.1 343 65.9
Eucgr.H04558 Eucalyptus grandis HOM05D005965 ORTHO05D007283 3.0e-129 466.1 389 62.5
Hma1.2p1_1292F.1_g273680 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 5.9e-125 451.8 336 67.3
HPP92_000400 Vanilla planifolia HOM05D005965 ORTHO05D007283 1.0e-124 451.1 455 53.6
HPP92_000403 Vanilla planifolia HOM05D005965 ORTHO05D007283 8.5e-124 448.0 455 53.2
SGA_v2.0_scaffold172G38992 Striga asiatica HOM05D005965 ORTHO05D007283 3.2e-123 446.0 466 52.4
BraA05t19070Z Brassica rapa HOM05D005965 ORTHO05D007283 1.8e-121 440.3 245 90.2
ATR0796G244 Amborella trichopoda HOM05D005965 ORTHO05D007283 5.2e-121 438.7 457 51.4
Thecc.05G312500 Theobroma cacao HOM05D005965 ORTHO05D007283 1.7e-119 433.7 371 62.3
AUR62005199 Chenopodium quinoa HOM05D005965 ORTHO05D007283 2.4e-118 429.9 392 57.7
SHI18108 Sapria himalayana HOM05D005965 ORTHO05D007283 6.5e-116 421.8 317 66.6
Migut.G01320 Erythranthe guttata HOM05D005965 ORTHO05D007283 1.5e-112 410.6 377 56.8
Haze_04145 Corylus avellana HOM05D005965 ORTHO05D007283 6.3e-111 405.2 255 74.1
SEGI_33282 Sequoiadendron giganteum HOM05D005965 ORTHO05D007283 6.3e-111 405.2 473 48.6
MELO3C031536.2 Cucumis melo HOM05D005965 ORTHO05D007283 5.9e-109 398.7 395 54.9
Eucgr.H04576 Eucalyptus grandis HOM05D005965 ORTHO05D007283 2.0e-104 383.6 253 69.6
Os03g0345100 Oryza sativa ssp. japonica HOM05D005965 ORTHO05D007283 1.1e-99 367.9 432 49.1
CDE02G1352 Ceratophyllum demersum HOM05D005965 ORTHO05D007283 1.2e-98 364.4 366 53.3
Eucgr.H04573 Eucalyptus grandis HOM05D005965 ORTHO05D007283 4.1e-94 349.4 279 61.3
Pp3c7_570 Physcomitrium patens HOM05D005965 ORTHO05D007283 1.2e-93 347.8 387 45.7
Pp3c15_2650 Physcomitrium patens HOM05D005965 ORTHO05D007283 1.9e-91 340.5 368 48.1
Eucgr.H04556 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.6e-90 337.4 289 58.8
SMO134G0282 Selaginella moellendorffii HOM05D005965 ORTHO05D007283 1.6e-90 337.4 354 49.7
Mapoly0078s0014 Marchantia polymorpha HOM05D005965 ORTHO05D007283 4.4e-88 329.3 449 42.5
Nitab4.5_0001057g0090 Nicotiana tabacum HOM05D005965 ORTHO05D007283 7.1e-86 322.0 350 51.4
SHI32441 Sapria himalayana HOM05D005965 ORTHO05D007283 2.1e-85 320.5 292 58.6
CBR_g180 Chara braunii HOM05D005965 ORTHO05D007283 3.6e-82 309.7 391 46.3
Zm00001eb016590 Zea mays HOM05D005965 ORTHO05D007283 7.6e-80 302.0 318 50.9
CARHR079870 Cardamine hirsuta HOM05D005965 ORTHO05D007283 9.6e-75 285.0 186 80.6
AL3G16050 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 1.7e-68 264.2 293 51.9
Eucgr.H04569 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.2e-64 251.5 447 40.3
Eucgr.H04571 Eucalyptus grandis HOM05D005965 ORTHO05D007283 2.5e-59 233.8 448 38.4
Psat6g098120 Pisum sativum HOM05D005965 ORTHO05D007283 2.3e-52 210.7 163 63.2
Thhalv10022144m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 3.3e-51 206.8 311 45.0
Thecc.07G184800 Theobroma cacao HOM05D005965 ORTHO05D007283 7.4e-51 205.7 234 50.4
Thecc.07G184700 Theobroma cacao HOM05D005965 ORTHO05D007283 8.2e-34 149.1 192 51.0
MCO01G074 Micromonas commoda HOM05D005965 ORTHO05D007283 2.9e-31 140.6 336 30.1
QL03p021253 Quercus lobata HOM05D005965 ORTHO05D007283 2.5e-30 137.5 93 67.7
PSO017G4250 Papaver somniferum HOM05D005965 ORTHO05D007283 1.4e-28 131.7 122 54.1
TAR633G2454 Trochodendron aralioides HOM05D005965 ORTHO05D007283 1.1e-27 128.6 134 52.2
Haze_04144 Corylus avellana HOM05D005965 ORTHO05D007283 5.0e-23 113.2 133 57.1
Cre16.g682950 Chlamydomonas reinhardtii HOM05D005965 ORTHO05D007283 8.5e-23 112.5 218 34.4
Eucgr.H04575 Eucalyptus grandis HOM05D005965 ORTHO05D007283 8.5e-23 112.5 125 46.4
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 1.9e-22 111.3 60 76.7
TWI56G1489 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 2.9e-15 87.4 73 60.3
Nitab4.5_0000524g0030 Nicotiana tabacum HOM05D005965 ORTHO05D007283 4.4e-11 73.6 208 34.6
C03p41530 Brassica napus HOM05D033945 ORTHO05D033616 2.9e-07 60.8 47 66.0
BolC3t16434H Brassica oleracea HOM05D033945 ORTHO05D033616 2.9e-07 60.8 47 66.0


User provided reference genes

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