Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29865 Brassica carinata HOM05D001733 ORTHO05D001882 2.6e-118 428.7 213 100.0
C05p63290 Brassica napus HOM05D001733 ORTHO05D001882 6.4e-117 424.1 213 98.1
BolC5t34992H Brassica oleracea HOM05D001733 ORTHO05D001882 1.9e-116 422.5 213 97.7
BcaC01g04396 Brassica carinata HOM05D001733 ORTHO05D001882 1.6e-112 409.5 220 92.7
BolC3t16323H Brassica oleracea HOM05D001733 ORTHO05D001882 1.6e-112 409.5 220 92.7
A03p33340 Brassica napus HOM05D001733 ORTHO05D001882 2.1e-112 409.1 208 95.7
BraA03t12505Z Brassica rapa HOM05D001733 ORTHO05D001882 2.1e-112 409.1 220 92.7
A05p43710 Brassica napus HOM05D001733 ORTHO05D001882 4.7e-112 407.9 205 97.6
C03p40580 Brassica napus HOM05D001733 ORTHO05D001882 6.2e-112 407.5 220 92.3
BraA05t23110Z Brassica rapa HOM05D001733 ORTHO05D001882 6.8e-111 404.1 205 97.1
BcaC05g30264 Brassica carinata HOM05D001733 ORTHO05D001882 1.2e-110 403.3 207 94.7
Carub.0003s0276 Capsella rubella HOM05D001733 ORTHO05D001882 1.5e-110 402.9 220 90.0
AL3G13370 Arabidopsis lyrata HOM05D001733 ORTHO05D001882 3.4e-110 401.7 220 89.5
AT3G03600 Arabidopsis thaliana HOM05D001733 ORTHO05D001882 7.6e-110 400.6 220 89.1
CARHR077640 Cardamine hirsuta HOM05D001733 ORTHO05D001882 7.6e-110 400.6 220 89.5
Sp3g02590 Schrenkiella parvula HOM05D001733 ORTHO05D001882 7.6e-110 400.6 209 91.4
Thhalv10021487m.g Eutrema salsugineum HOM05D001733 ORTHO05D001882 9.9e-110 400.2 207 93.2
Aa31LG5G14110 Aethionema arabicum HOM05D001733 ORTHO05D001882 6.6e-106 387.5 208 88.9
THA.LOC104820811 Tarenaya hassleriana HOM05D001733 ORTHO05D001882 7.9e-99 364.0 212 81.1
BcaB04g19363 Brassica carinata HOM05D001733 ORTHO05D001882 5.6e-89 331.3 170 94.7
Cpa.g.sc73.32 Carica papaya HOM05D001733 ORTHO05D001882 2.7e-75 285.8 209 65.1
Ciclev10023278m.g Citrus clementina HOM05D001733 ORTHO05D001882 1.6e-72 276.6 209 64.1
Lj1g0025923 Lotus japonicus HOM05D001733 ORTHO05D001882 1.6e-72 276.6 212 63.7
MD02G1230600 Malus domestica HOM05D001733 ORTHO05D001882 1.6e-72 276.6 209 63.2
Eucgr.D01117 Eucalyptus grandis HOM05D001733 ORTHO05D001882 1.1e-71 273.9 204 67.2
Manes.08G156000 Manihot esculenta HOM05D001733 ORTHO05D001882 1.2e-70 270.4 212 62.7
TWI39G0742 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 1.2e-70 270.4 209 62.7
Atru.chr9.238 Acer truncatum HOM05D001733 ORTHO05D001882 1.5e-70 270.0 211 61.1
Cfa003706 Carpinus fangiana HOM05D001733 ORTHO05D001882 5.9e-70 268.1 204 63.7
Haze_15782 Corylus avellana HOM05D001733 ORTHO05D001882 5.9e-70 268.1 204 63.2
RcHm_v2.0_Chr1g0341081 Rosa chinensis HOM05D001733 ORTHO05D001882 1.3e-69 266.9 210 60.5
TWI73G0070 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 1.7e-69 266.5 210 60.5
PGR044G0034 Punica granatum HOM05D001733 ORTHO05D001882 3.8e-69 265.4 211 62.6
CiPaw.02G047900 Carya illinoinensis HOM05D001733 ORTHO05D001882 6.5e-69 264.6 204 62.7
Sabra13G0060700 Salix brachista HOM05D001733 ORTHO05D001882 6.5e-69 264.6 204 62.3
Prupe.2G107500 Prunus persica HOM05D001733 ORTHO05D001882 1.1e-68 263.8 200 63.0
Lsat_1_v5_gn_7_34060 Lactuca sativa HOM05D001733 ORTHO05D001882 3.2e-68 262.3 208 62.0
QL08p048200 Quercus lobata HOM05D001733 ORTHO05D001882 3.2e-68 262.3 207 62.3
Potri.013G070001 Populus trichocarpa HOM05D001733 ORTHO05D001882 1.6e-67 260.0 204 61.8
Lalb_Chr23g0264941 Lupinus albus HOM05D001733 ORTHO05D001882 4.6e-67 258.5 203 61.1
Sed0021856 Sechium edule HOM05D001733 ORTHO05D001882 4.6e-67 258.5 203 61.1
ClCG08G014080 Citrullus lanatus HOM05D001733 ORTHO05D001882 6.1e-67 258.1 203 60.1
Cc02_g26570 Coffea canephora HOM05D001733 ORTHO05D001882 6.1e-67 258.1 208 61.1
Psat5g001280 Pisum sativum HOM05D001733 ORTHO05D001882 7.9e-67 257.7 207 58.9
CANSAT78G1742 Cannabis sativa HOM05D001733 ORTHO05D001882 1.8e-66 256.5 197 61.9
HanXRQChr04g0117601 Helianthus annuus HOM05D001733 ORTHO05D001882 2.3e-66 256.1 210 59.0
Ca_15286_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 8.8e-66 254.2 207 57.5
Ca_15422_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 8.8e-66 254.2 207 57.5
FvH4_7g08140 Fragaria vesca HOM05D001733 ORTHO05D001882 8.8e-66 254.2 205 60.0
FAN06G0601 Fragaria x ananassa HOM05D001733 ORTHO05D001882 8.8e-66 254.2 205 60.0
Gorai.007G250600 Gossypium raimondii HOM05D001733 ORTHO05D001882 8.8e-66 254.2 205 59.0
FAN03G0842 Fragaria x ananassa HOM05D001733 ORTHO05D001882 1.1e-65 253.8 205 60.0
Hund19368 Selenicereus undatus HOM05D001733 ORTHO05D001882 1.1e-65 253.8 203 59.1
FAN01G0027 Fragaria x ananassa HOM05D001733 ORTHO05D001882 1.5e-65 253.4 205 60.0
Gohir.D11G237300 Gossypium hirsutum HOM05D001733 ORTHO05D001882 1.5e-65 253.4 205 59.0
Dinv43956 Davidia involucrata HOM05D001733 ORTHO05D001882 2.0e-65 253.1 211 59.7
FAN10G0402 Fragaria x ananassa HOM05D001733 ORTHO05D001882 2.0e-65 253.1 205 59.5
Gohir.A11G224218 Gossypium hirsutum HOM05D001733 ORTHO05D001882 2.0e-65 253.1 205 59.5
Lj7P561T30 Lonicera japonica HOM05D001733 ORTHO05D001882 2.0e-65 253.1 204 59.8
Phvul.009G117800 Phaseolus vulgaris HOM05D001733 ORTHO05D001882 3.3e-65 252.3 202 59.9
VMungo1309G3105 Vigna mungo HOM05D001733 ORTHO05D001882 3.3e-65 252.3 209 58.4
Glyma.06G001900 Glycine max HOM05D001733 ORTHO05D001882 5.7e-65 251.5 213 57.7
Thecc.05G236000 Theobroma cacao HOM05D001733 ORTHO05D001882 5.7e-65 251.5 203 58.6
CSS0001376 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 7.4e-65 251.1 202 61.4
CSS0011354 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 7.4e-65 251.1 202 61.4
Medtr3g118200 Medicago truncatula HOM05D001733 ORTHO05D001882 7.4e-65 251.1 199 60.3
DCAR_029572 Daucus carota HOM05D001733 ORTHO05D001882 9.7e-65 250.8 206 59.2
Duzib106G0611 Durio zibethinus HOM05D001733 ORTHO05D001882 9.7e-65 250.8 209 58.9
Solyc01g081520.3 Solanum lycopersicum HOM05D001733 ORTHO05D001882 2.2e-64 249.6 208 58.2
Sopen01g033080 Solanum pennellii HOM05D001733 ORTHO05D001882 2.2e-64 249.6 208 58.2
PGSC0003DMG401031123 Solanum tuberosum HOM05D001733 ORTHO05D001882 2.8e-64 249.2 203 59.1
CsaV3_2G024360 Cucumis sativus L. HOM05D001733 ORTHO05D001882 8.2e-64 247.7 203 59.6
AUR62020701 Chenopodium quinoa HOM05D001733 ORTHO05D001882 1.1e-63 247.3 207 57.0
Nitab4.5_0000792g0200 Nicotiana tabacum HOM05D001733 ORTHO05D001882 1.4e-63 246.9 203 59.1
AUR62028023 Chenopodium quinoa HOM05D001733 ORTHO05D001882 4.1e-63 245.4 207 56.5
MELO3C011346.2 Cucumis melo HOM05D001733 ORTHO05D001882 4.1e-63 245.4 203 58.1
arahy.Tifrunner.gnm1.ann1.A8CT9J Arachis hypogaea HOM05D001733 ORTHO05D001882 5.3e-63 245.0 203 58.6
Nitab4.5_0007787g0030 Nicotiana tabacum HOM05D001733 ORTHO05D001882 1.2e-62 243.8 208 57.2
vmacro15942 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 1.2e-62 243.8 219 56.2
EL10Ac2g03646 Beta vulgaris HOM05D001733 ORTHO05D001882 2.0e-62 243.0 211 53.6
TAR362G0336 Trochodendron aralioides HOM05D001733 ORTHO05D001882 4.5e-62 241.9 200 58.5
Aqoxy7G03741 Aquilegia oxysepala HOM05D001733 ORTHO05D001882 6.5e-61 238.0 203 59.1
Oeu060721.2 Olea europaea HOM05D001733 ORTHO05D001882 1.1e-60 237.3 202 56.9
COL.COLO4_21825 Corchorus olitorius HOM05D001733 ORTHO05D001882 3.2e-60 235.7 203 53.2
Sc06g0001410 Simmondsia chinensis HOM05D001733 ORTHO05D001882 4.2e-60 235.3 206 54.4
ECA236G4258 Erigeron canadensis HOM05D000200 ORTHO05D000262 1.6e-59 233.4 191 60.7
MSTRG.20625 Avicennia marina HOM05D001733 ORTHO05D001882 2.7e-59 232.6 200 56.0
Migut.B01416 Erythranthe guttata HOM05D001733 ORTHO05D001882 7.9e-59 231.1 203 53.2
SGA_v2.0_scaffold98G29368 Striga asiatica HOM05D001733 ORTHO05D001882 1.8e-58 229.9 206 53.9
Rhsim07G0048200 Rhododendron simsii HOM05D001733 ORTHO05D001882 5.7e-57 224.9 202 55.0
SalBow5G0061 Salvia bowleyana HOM05D001733 ORTHO05D001882 5.7e-57 224.9 211 51.2
unitig_0.g1363 Utricularia gibba HOM05D001733 ORTHO05D001882 3.7e-56 222.2 200 52.0
Actinidia26430 Actinidia chinensis HOM05D001733 ORTHO05D001882 8.0e-51 204.5 173 57.2
Nn044s41810 Nelumbo nucifera HOM05D001733 ORTHO05D001882 7.0e-47 191.4 200 49.5
Nn1g10086 Nelumbo nucifera HOM05D001733 ORTHO05D001882 7.0e-47 191.4 200 49.5
Ah.13g073670 Amaranthus hybridus HOM05D001733 ORTHO05D001882 1.6e-46 190.3 167 55.7
Cc08_g05780 Coffea canephora HOM05D001733 ORTHO05D001882 2.7e-46 189.5 177 57.1
Cc05_g05120 Coffea canephora HOM05D001733 ORTHO05D001882 3.5e-46 189.1 177 57.1
RcHm_v2.0_Chr1g0383121 Rosa chinensis HOM05D001733 ORTHO05D001882 1.1e-44 184.1 196 49.5
vmacro13603 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 5.5e-44 181.8 203 47.8
RcHm_v2.0_Chr2g0085551 Rosa chinensis HOM05D001733 ORTHO05D001882 2.1e-43 179.9 142 59.2
SEGI_38852 Sequoiadendron giganteum HOM05D001733 ORTHO05D001882 1.5e-41 173.7 210 42.4
RcHm_v2.0_Chr1g0363821 Rosa chinensis HOM05D001733 ORTHO05D001882 1.8e-39 166.8 147 54.4
RcHm_v2.0_Chr5g0027611 Rosa chinensis HOM05D001733 ORTHO05D001882 5.9e-38 161.8 111 63.1
TPR.G38482 Trifolium pratense HOM05D001733 ORTHO05D001882 1.3e-37 160.6 207 43.0
RcHm_v2.0_Chr3g0481141 Rosa chinensis HOM05D001733 ORTHO05D001882 2.9e-37 159.5 140 54.3
RcHm_v2.0_Chr6g0246101 Rosa chinensis HOM05D001733 ORTHO05D001882 2.6e-33 146.4 111 58.6
CAN.G1249.13 Capsicum annuum HOM05D001733 ORTHO05D001882 3.7e-32 142.5 113 57.5
AagrBONN_evm.TU.Sc2ySwM_228.194 Anthoceros agrestis HOM05D001733 ORTHO05D001882 7.0e-31 138.3 222 33.8
arahy.Tifrunner.gnm1.ann1.VEWU5V Arachis hypogaea HOM05D001733 ORTHO05D001882 2.9e-29 132.9 98 63.3
RcHm_v2.0_Chr5g0054321 Rosa chinensis HOM05D001733 ORTHO05D001882 6.1e-27 125.2 111 51.4
HanXRQChr16g0501591 Helianthus annuus HOM05D001733 ORTHO05D001882 7.5e-25 118.2 96 58.3
Peaxi162Scf01260g00014 Petunia axillaris HOM05D001733 ORTHO05D001882 9.8e-25 117.9 88 61.4
BcaC02g09516 Brassica carinata HOM05D001733 ORTHO05D001882 1.6e-22 110.5 81 72.8
A01p19710 Brassica napus HOM05D001733 ORTHO05D001882 1.1e-20 104.4 56 91.1
C04p32130 Brassica napus HOM05D001733 ORTHO05D001882 1.1e-20 104.4 52 98.1
C04p54460 Brassica napus HOM05D001733 ORTHO05D001882 1.9e-20 103.6 53 96.2
BolC4t25944H Brassica oleracea HOM05D001733 ORTHO05D001882 2.5e-20 103.2 52 96.2
C03p74560 Brassica napus HOM05D001733 ORTHO05D001882 7.3e-20 101.7 52 94.2
Zm00001eb385930 Zea mays HOM05D022646 ORTHO05D001882 4.0e-18 95.9 96 51.0
Zm00001eb436200 Zea mays HOM05D022646 ORTHO05D001882 4.0e-18 95.9 96 51.0
Zm00001eb436250 Zea mays HOM05D022646 ORTHO05D001882 4.0e-18 95.9 96 51.0
Zm00001eb436290 Zea mays HOM05D022646 ORTHO05D001882 4.0e-18 95.9 96 51.0
Zm00001eb436330 Zea mays HOM05D022646 ORTHO05D001882 4.0e-18 95.9 96 51.0
arahy.Tifrunner.gnm1.ann1.3YR680 Arachis hypogaea HOM05D001733 ORTHO05D001882 6.4e-16 88.6 70 57.1
RcHm_v2.0_Chr5g0036111 Rosa chinensis HOM05D001733 ORTHO05D001882 4.1e-15 85.9 140 35.7
arahy.Tifrunner.gnm1.ann1.BIR89S Arachis hypogaea HOM05D001903 ORTHO05D001847 1.9e-07 60.5 74 45.9
Mapoly0051s0114 Marchantia polymorpha HOM05D052641 ORTHO05D001882 4.1e-07 59.3 74 43.2
ATR0660G006 Amborella trichopoda HOM05D001733 ORTHO05D001882 1.6e-06 57.4 47 51.1
Gorai.008G076300 Gossypium raimondii HOM05D001733 ORTHO05D047820 2.7e-06 56.6 39 59.0
Gohir.D12G069601 Gossypium hirsutum HOM05D001733 ORTHO05D047820 7.8e-06 55.1 39 56.4


User provided reference genes

Program Settings