Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29842 Brassica carinata HOM05D005051 ORTHO05D005945 0.0e+00 1265.8 634 100.0
BolC5t34674H Brassica oleracea HOM05D005051 ORTHO05D005945 0.0e+00 1253.8 635 99.4
C05p60240 Brassica napus HOM05D005051 ORTHO05D005945 0.0e+00 1241.5 635 98.7
BraA05t22834Z Brassica rapa HOM05D005051 ORTHO05D005945 0.0e+00 1196.4 642 94.1
A05p41070 Brassica napus HOM05D005051 ORTHO05D005945 0.0e+00 1188.3 642 93.6
BcaC05g29752 Brassica carinata HOM05D005051 ORTHO05D005945 0.0e+00 1157.1 639 91.7
AL3G18390 Arabidopsis lyrata HOM05D005051 ORTHO05D005945 0.0e+00 1088.2 642 86.1
Thhalv10020265m.g Eutrema salsugineum HOM05D005051 ORTHO05D005945 0.0e+00 1078.2 651 83.9
AT3G07140 Arabidopsis thaliana HOM05D005051 ORTHO05D005945 0.0e+00 1075.5 642 85.0
Carub.0003s0666 Capsella rubella HOM05D005051 ORTHO05D005945 4.3e-312 1074.3 642 84.4
CARHR081740 Cardamine hirsuta HOM05D005051 ORTHO05D005945 6.2e-309 1063.5 651 83.6
Aa31LG5G17700 Aethionema arabicum HOM05D005051 ORTHO05D005945 3.2e-297 1024.6 652 79.8
THA.LOC104818965 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 2.4e-281 971.8 652 75.6
THA.LOC104802665 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 6.0e-272 940.6 642 74.8
Atru.chr6.1506 Acer truncatum HOM05D005051 ORTHO05D005945 7.2e-241 837.4 662 64.5
Cpa.g.sc8.135 Carica papaya HOM05D005051 ORTHO05D005945 7.5e-238 827.4 659 65.1
Thecc.01G222800 Theobroma cacao HOM05D005051 ORTHO05D005945 1.3e-234 816.6 668 64.1
TWI36G0473 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 5.0e-234 814.7 658 64.3
COL.COLO4_15648 Corchorus olitorius HOM05D005051 ORTHO05D005945 6.5e-234 814.3 665 63.5
Haze_24821 Corylus avellana HOM05D005051 ORTHO05D005945 4.7e-232 808.1 664 63.7
CiPaw.03G147700 Carya illinoinensis HOM05D005051 ORTHO05D005945 6.1e-232 807.7 663 63.3
Cfa002585 Carpinus fangiana HOM05D005051 ORTHO05D005945 1.0e-231 807.0 664 63.6
Sp3g06080 Schrenkiella parvula HOM05D005051 ORTHO05D005945 1.5e-230 803.1 488 85.2
Ciclev10019161m.g Citrus clementina HOM05D005051 ORTHO05D005945 7.5e-230 800.8 665 62.1
Dinv19188 Davidia involucrata HOM05D005051 ORTHO05D005945 7.5e-230 800.8 659 62.8
Actinidia30063 Actinidia chinensis HOM05D005051 ORTHO05D005945 9.8e-230 800.4 667 61.9
Duzib138G1384 Durio zibethinus HOM05D005051 ORTHO05D005945 9.8e-230 800.4 640 64.5
Duzib211G0096 Durio zibethinus HOM05D005051 ORTHO05D005945 2.2e-229 799.3 663 62.6
TAR365G1079 Trochodendron aralioides HOM05D005051 ORTHO05D005945 3.7e-229 798.5 654 63.5
QL09p053053 Quercus lobata HOM05D005051 ORTHO05D005945 1.4e-228 796.6 665 62.4
Gohir.D07G164100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 3.1e-228 795.4 674 61.4
Gorai.001G188000 Gossypium raimondii HOM05D005051 ORTHO05D005945 5.4e-228 794.7 663 61.8
FAN24G2416 Fragaria x ananassa HOM05D005051 ORTHO05D005945 4.5e-227 791.6 659 62.2
FAN27G0551 Fragaria x ananassa HOM05D005051 ORTHO05D005945 2.9e-226 788.9 659 62.2
Potri.014G190600 Populus trichocarpa HOM05D005051 ORTHO05D005945 2.9e-226 788.9 639 64.5
FvH4_2g18730 Fragaria vesca HOM05D005051 ORTHO05D005945 8.6e-226 787.3 659 62.1
QL09p052190 Quercus lobata HOM05D005051 ORTHO05D005945 8.6e-226 787.3 663 62.1
Gohir.A07G158000 Gossypium hirsutum HOM05D005051 ORTHO05D005945 3.3e-225 785.4 657 62.3
Sabra14G0142400 Salix brachista HOM05D005051 ORTHO05D005945 8.9e-223 777.3 685 60.3
CSS0047345 Camellia sinensis var. sinensis HOM05D005051 ORTHO05D005945 5.7e-222 774.6 645 62.2
arahy.Tifrunner.gnm1.ann1.SK15G6 Arachis hypogaea HOM05D005051 ORTHO05D005945 7.5e-222 774.2 635 62.2
ClCG09G008890 Citrullus lanatus HOM05D005051 ORTHO05D005945 7.5e-222 774.2 661 60.5
HanXRQChr04g0108251 Helianthus annuus HOM05D005051 ORTHO05D005945 1.7e-221 773.1 649 59.3
RcHm_v2.0_Chr6g0284351 Rosa chinensis HOM05D005051 ORTHO05D005945 1.7e-221 773.1 663 60.9
GSVIVG01011065001 Vitis vinifera HOM05D005051 ORTHO05D005945 2.8e-221 772.3 644 64.0
Gohir.D11G145300 Gossypium hirsutum HOM05D005051 ORTHO05D005945 3.7e-221 771.9 649 61.5
SalBow6G3716 Salvia bowleyana HOM05D005051 ORTHO05D005945 4.9e-221 771.5 650 61.1
Manes.13G046400 Manihot esculenta HOM05D005051 ORTHO05D005945 1.1e-220 770.4 662 61.6
MD13G1217900 Malus domestica HOM05D005051 ORTHO05D005945 3.1e-220 768.8 656 60.7
Sed0004391 Sechium edule HOM05D005051 ORTHO05D005945 5.4e-220 768.1 660 59.5
Lj2A1128T45 Lonicera japonica HOM05D005051 ORTHO05D005945 9.2e-220 767.3 672 59.7
arahy.Tifrunner.gnm1.ann1.8DP3DE Arachis hypogaea HOM05D005051 ORTHO05D005945 4.5e-219 765.0 634 61.7
Lj3g0013392 Lotus japonicus HOM05D005051 ORTHO05D005945 4.5e-219 765.0 637 61.4
Lalb_Chr13g0291091 Lupinus albus HOM05D005051 ORTHO05D005945 5.9e-219 764.6 638 62.1
Migut.D02493 Erythranthe guttata HOM05D005051 ORTHO05D005945 1.0e-218 763.8 639 60.4
MELO3C021052.2 Cucumis melo HOM05D005051 ORTHO05D005945 1.7e-218 763.1 661 59.2
Cc01_g16860 Coffea canephora HOM05D005051 ORTHO05D005945 5.0e-218 761.5 665 58.8
ECA236G0910 Erigeron canadensis HOM05D005051 ORTHO05D005945 6.6e-218 761.1 652 60.0
CsaV3_7G026000 Cucumis sativus L. HOM05D005051 ORTHO05D005945 1.5e-217 760.0 661 59.5
Glyma.03G064400 Glycine max HOM05D005051 ORTHO05D005945 1.5e-217 760.0 661 59.6
Phvul.010G020500 Phaseolus vulgaris HOM05D005051 ORTHO05D005945 4.3e-217 758.4 637 61.9
Sed0023522 Sechium edule HOM05D005051 ORTHO05D005945 7.3e-217 757.7 667 59.8
Lsat_1_v5_gn_8_89520 Lactuca sativa HOM05D005051 ORTHO05D005945 1.6e-216 756.5 647 59.7
Eucgr.E03305 Eucalyptus grandis HOM05D005051 ORTHO05D005945 3.6e-216 755.4 638 60.5
Solyc09g059960.3 Solanum lycopersicum HOM05D005051 ORTHO05D005945 8.0e-216 754.2 656 59.3
PGR083G2429 Punica granatum HOM05D005051 ORTHO05D005945 1.0e-215 753.8 638 60.8
PGSC0003DMG400023098 Solanum tuberosum HOM05D005051 ORTHO05D005945 1.0e-215 753.8 655 59.2
Ca_23236_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 1.4e-215 753.4 637 60.4
MSTRG.18843 Avicennia marina HOM05D005051 ORTHO05D005945 3.1e-215 752.3 654 58.6
Gohir.A11G139100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.2e-214 750.4 612 62.4
Medtr8g013045 Medicago truncatula HOM05D005051 ORTHO05D005945 1.5e-214 750.0 663 59.4
Psat4g199920 Pisum sativum HOM05D005051 ORTHO05D005945 1.5e-214 750.0 654 59.9
Sopen09g023140 Solanum pennellii HOM05D005051 ORTHO05D005945 5.8e-214 748.0 659 59.0
Nn2g14125 Nelumbo nucifera HOM05D005051 ORTHO05D005945 2.9e-213 745.7 651 58.8
VMungo1309G1922 Vigna mungo HOM05D005051 ORTHO05D005945 8.3e-213 744.2 638 61.1
Glyma.16G101100 Glycine max HOM05D005051 ORTHO05D005945 1.9e-212 743.0 638 60.3
Peaxi162Scf00398g00089 Petunia axillaris HOM05D005051 ORTHO05D005945 4.1e-212 741.9 658 59.1
EL10Ac7g17867 Beta vulgaris HOM05D005051 ORTHO05D005945 7.0e-212 741.1 659 58.4
TPR.G17135 Trifolium pratense HOM05D005051 ORTHO05D005945 9.2e-212 740.7 653 59.7
AUR62008933 Chenopodium quinoa HOM05D005051 ORTHO05D005945 1.6e-211 740.0 661 58.7
PSO384G3368 Papaver somniferum HOM05D005051 ORTHO05D005945 1.6e-211 740.0 664 57.2
CAN.G3.1 Capsicum annuum HOM05D005051 ORTHO05D005945 3.5e-211 738.8 659 58.7
SGA_v2.0_scaffold171G38944 Striga asiatica HOM05D005051 ORTHO05D005945 1.3e-210 736.9 639 57.9
vmacro02772 Vaccinium macrocarpon HOM05D005051 ORTHO05D005945 1.7e-210 736.5 589 63.3
Nitab4.5_0000045g0340 Nicotiana tabacum HOM05D005051 ORTHO05D005945 8.6e-210 734.2 647 59.2
Ah.02g115620 Amaranthus hybridus HOM05D005051 ORTHO05D005945 1.1e-209 733.8 633 59.7
AUR62001109 Chenopodium quinoa HOM05D005051 ORTHO05D005945 1.5e-209 733.4 661 58.2
Oeu018495.2 Olea europaea HOM05D005051 ORTHO05D005945 1.8e-207 726.5 618 60.4
Sc17g0002210 Simmondsia chinensis HOM05D005051 ORTHO05D005945 7.8e-203 711.1 601 60.2
CDE05G0682 Ceratophyllum demersum HOM05D005051 ORTHO05D005945 1.7e-202 709.9 631 58.2
Zm00001eb269850 Zea mays HOM05D005051 ORTHO05D005945 4.7e-200 701.8 629 56.9
Aqoxy4G00040 Aquilegia oxysepala HOM05D005051 ORTHO05D005945 8.9e-199 697.6 657 55.9
Oeu035785.1 Olea europaea HOM05D005051 ORTHO05D005945 2.6e-198 696.0 656 56.6
PSO339G3208 Papaver somniferum HOM05D005051 ORTHO05D005945 2.6e-198 696.0 663 54.1
Gorai.007G155800 Gossypium raimondii HOM05D005051 ORTHO05D005945 9.9e-198 694.1 639 58.1
DCAR_012658 Daucus carota HOM05D005051 ORTHO05D005945 2.4e-196 689.5 622 58.4
Prupe.8G200800 Prunus persica HOM05D005051 ORTHO05D005945 2.7e-195 686.0 584 60.6
FAN15G1450 Fragaria x ananassa HOM05D005051 ORTHO05D005945 2.5e-193 679.5 583 60.5
MD16G1223000 Malus domestica HOM05D005051 ORTHO05D005945 3.8e-189 665.6 575 59.8
SHI23570 Sapria himalayana HOM05D005051 ORTHO05D005945 6.4e-181 638.3 618 55.5
Sp2g19120 Schrenkiella parvula HOM05D005051 ORTHO05D005945 3.2e-180 636.0 558 62.0
Medtr8g013050 Medicago truncatula HOM05D005051 ORTHO05D005945 2.6e-174 616.3 558 57.5
ATR0564G162 Amborella trichopoda HOM05D005051 ORTHO05D005945 1.1e-169 600.9 547 55.6
SEGI_10192 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 2.7e-163 579.7 556 54.9
Hund18405 Selenicereus undatus HOM05D005051 ORTHO05D005945 6.3e-152 542.0 494 56.9
Mapoly0173s0012 Marchantia polymorpha HOM05D005051 ORTHO05D005945 6.9e-151 538.5 663 45.9
SMO259G0038 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.3e-146 523.5 560 51.1
unitig_899.g15019 Utricularia gibba HOM05D005051 ORTHO05D005945 2.2e-128 463.8 418 56.0
Pp3c21_19350 Physcomitrium patens HOM05D005051 ORTHO05D005945 5.9e-126 455.7 645 41.6
SEGI_29510 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 1.1e-119 434.9 449 50.6
Actinidia31469 Actinidia chinensis HOM05D005051 ORTHO05D005945 2.2e-117 427.2 642 41.0
CBR_g44939 Chara braunii HOM05D005051 ORTHO05D005945 6.8e-114 415.6 835 34.0
TWI18G1080 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 4.2e-108 396.4 392 57.4
AagrBONN_evm.TU.Sc2ySwM_368.938 Anthoceros agrestis HOM05D005051 ORTHO05D005945 1.1e-100 371.7 567 40.2
QL09p053462 Quercus lobata HOM05D005051 ORTHO05D005945 6.0e-86 322.8 387 46.5
COL.COLO4_36899 Corchorus olitorius HOM05D005051 ORTHO05D005945 1.3e-85 321.6 198 73.7
Os11g0479232 Oryza sativa ssp. japonica HOM05D005051 ORTHO05D005945 3.6e-83 313.5 285 57.9
MCO05G006 Micromonas commoda HOM05D005051 ORTHO05D005945 5.8e-73 279.6 613 33.9
Glyma.13G182400 Glycine max HOM05D005051 ORTHO05D005945 2.4e-66 257.7 205 63.4
Ca_23237_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 9.3e-63 245.7 311 47.3
Glyma.13G196100 Glycine max HOM05D005051 ORTHO05D005945 4.0e-58 230.3 204 55.9
Cfa025345 Carpinus fangiana HOM05D005051 ORTHO05D005945 1.3e-56 225.3 643 28.8
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 2.3e-53 214.5 629 29.4
Cre10.g441100 Chlamydomonas reinhardtii HOM05D005051 ORTHO05D005945 2.8e-51 207.6 687 26.9
Sed0011580 Sechium edule HOM05D005051 ORTHO05D005945 1.0e-48 199.1 385 38.2
QL09p048654 Quercus lobata HOM05D005051 ORTHO05D005945 3.5e-46 190.7 227 43.6
HPP92_008216 Vanilla planifolia HOM05D005051 ORTHO05D005945 6.0e-46 189.9 175 55.4
SMO259G0024 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 3.9e-45 187.2 366 36.6
SMO259G0021 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.9e-44 184.9 266 42.9
Nitab4.5_0000345g0090 Nicotiana tabacum HOM05D005051 ORTHO05D000055 1.6e-43 181.8 146 67.1
Glyma.13G059866 Glycine max HOM05D005051 ORTHO05D005945 3.8e-40 170.6 120 70.8
SMO174G0204 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 9.7e-36 156.0 264 38.3
TPR.G17133 Trifolium pratense HOM05D005051 ORTHO05D005945 6.5e-32 143.3 147 47.6
Zm00001eb184180 Zea mays HOM05D005051 ORTHO05D005945 1.9e-31 141.7 109 60.6
QL09p053457 Quercus lobata HOM05D005051 ORTHO05D005945 2.7e-30 137.9 172 47.7
Medtr6g061260 Medicago truncatula HOM05D005051 ORTHO05D005945 4.6e-30 137.1 123 59.3
unitig_899.g15018 Utricularia gibba HOM05D003904 ORTHO05D004378 9.7e-28 129.4 110 63.6
SMO108G0003 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.8e-27 127.9 216 37.5
SMO108G0001 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 8.2e-27 126.3 216 37.0
SMO108G0002 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 8.2e-27 126.3 216 37.0
SMO108G0004 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 8.2e-27 126.3 216 37.0
SMO108G0005 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 8.2e-27 126.3 216 37.0
SMO259G0028 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 3.1e-26 124.4 178 39.3
SMO259G0051 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 7.9e-22 109.8 157 41.4
SMO313G0001 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 1.8e-21 108.6 157 40.8
SMO259G0015 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 3.9e-21 107.5 157 40.8
SMO259G0055 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 7.4e-20 103.2 157 40.1
Glyma.13G258901 Glycine max HOM05D005051 ORTHO05D005945 2.8e-19 101.3 69 75.4
Glyma.13G368066 Glycine max HOM05D005051 ORTHO05D005945 2.4e-18 98.2 69 73.9
Glyma.13G258850 Glycine max HOM05D005051 ORTHO05D005945 7.0e-18 96.7 235 32.3
Glyma.13G368132 Glycine max HOM05D005051 ORTHO05D005945 2.9e-16 91.3 175 36.6
Hund18406 Selenicereus undatus HOM05D005051 ORTHO05D005945 1.4e-10 72.4 48 64.6
Lsat_1_v5_gn_5_150541 Lactuca sativa HOM05D005051 ORTHO05D048368 7.0e-10 70.1 74 51.4
Lsat_1_v5_gn_5_28021 Lactuca sativa HOM05D001978 ORTHO05D048368 1.6e-09 68.9 47 63.8
Medtr6g061110 Medicago truncatula HOM05D005051 ORTHO05D000004 1.7e-08 65.5 40 72.5


User provided reference genes

Program Settings