Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29822 Brassica carinata HOM05D006680 ORTHO05D008206 1.6e-62 242.7 127 100.0
BolC5t34701H Brassica oleracea HOM05D006680 ORTHO05D008206 1.6e-62 242.7 127 100.0
A03p34950 Brassica napus HOM05D006680 ORTHO05D008206 1.4e-58 229.6 128 96.1
C03p42530 Brassica napus HOM05D006680 ORTHO05D008206 1.4e-58 229.6 128 96.1
BolC3t16523H Brassica oleracea HOM05D006680 ORTHO05D008206 1.4e-58 229.6 128 96.1
BraA03t12675Z Brassica rapa HOM05D006680 ORTHO05D008206 1.4e-58 229.6 128 96.1
BraA05t22848Z Brassica rapa HOM05D006680 ORTHO05D008206 3.1e-58 228.4 127 96.1
A05p41250 Brassica napus HOM05D006680 ORTHO05D008206 1.5e-57 226.1 127 96.1
Thhalv10021931m.g Eutrema salsugineum HOM05D006680 ORTHO05D008206 5.8e-49 197.6 127 83.5
THA.LOC104818922 Tarenaya hassleriana HOM05D006680 ORTHO05D008206 1.3e-45 186.4 125 78.4
CARHR081510 Cardamine hirsuta HOM05D006680 ORTHO05D008206 1.7e-45 186.0 128 80.5
Sp3g05850 Schrenkiella parvula HOM05D006680 ORTHO05D008206 2.3e-45 185.7 127 78.7
AL3G18020 Arabidopsis lyrata HOM05D006680 ORTHO05D008206 3.9e-45 184.9 129 80.6
AT3G06890 Arabidopsis thaliana HOM05D006680 ORTHO05D008206 5.1e-45 184.5 129 80.6
RcHm_v2.0_Chr4g0422811 Rosa chinensis HOM05D006680 ORTHO05D008206 5.1e-45 184.5 123 78.9
Prupe.1G134500 Prunus persica HOM05D006680 ORTHO05D008206 1.5e-44 183.0 123 78.9
Carub.0003s0642 Capsella rubella HOM05D006680 ORTHO05D008206 5.6e-44 181.0 127 78.0
Cpa.g.sc16.184 Carica papaya HOM05D006680 ORTHO05D008206 5.6e-44 181.0 127 78.0
MD13G1167200 Malus domestica HOM05D006680 ORTHO05D008206 7.3e-44 180.6 115 80.9
FAN07G2082 Fragaria x ananassa HOM05D006680 ORTHO05D008206 9.6e-44 180.3 123 75.6
FAN12G3601 Fragaria x ananassa HOM05D006680 ORTHO05D008206 9.6e-44 180.3 123 75.6
FAN17G1034 Fragaria x ananassa HOM05D006680 ORTHO05D008206 9.6e-44 180.3 123 75.6
FvH4_4g18340 Fragaria vesca HOM05D006680 ORTHO05D008206 1.3e-43 179.9 123 75.6
Manes.15G011600 Manihot esculenta HOM05D006680 ORTHO05D008206 1.6e-43 179.5 127 78.7
VMungo1215G2846 Vigna mungo HOM05D006680 ORTHO05D008206 2.8e-43 178.7 118 80.5
FAN12G3976 Fragaria x ananassa HOM05D006680 ORTHO05D008206 6.2e-43 177.6 123 74.8
Gohir.A10G164900 Gossypium hirsutum HOM05D006680 ORTHO05D008206 6.2e-43 177.6 116 80.2
Gohir.D10G171100 Gossypium hirsutum HOM05D006680 ORTHO05D008206 6.2e-43 177.6 116 80.2
Gorai.011G191100 Gossypium raimondii HOM05D006680 ORTHO05D008206 6.2e-43 177.6 116 80.2
Manes.03G196700 Manihot esculenta HOM05D006680 ORTHO05D008206 8.1e-43 177.2 124 79.0
Thecc.04G286300 Theobroma cacao HOM05D006680 ORTHO05D008206 2.4e-42 175.6 113 82.3
ClCG00G005610 Citrullus lanatus HOM05D006680 ORTHO05D008206 3.1e-42 175.3 127 74.0
Ciclev10006049m.g Citrus clementina HOM05D006680 ORTHO05D008206 3.1e-42 175.3 115 80.9
Duzib151G0306 Durio zibethinus HOM05D006680 ORTHO05D008206 6.9e-42 174.1 128 75.0
Potri.008G221000 Populus trichocarpa HOM05D006680 ORTHO05D008206 9.0e-42 173.7 112 83.0
Duzib212G0294 Durio zibethinus HOM05D006680 ORTHO05D008206 1.2e-41 173.3 128 75.0
TWI09G0327 Tripterygium wilfordii HOM05D006680 ORTHO05D008206 1.2e-41 173.3 125 74.4
Medtr4g120020 Medicago truncatula HOM05D006680 ORTHO05D008206 1.5e-41 172.9 127 76.4
CiPaw.01G147500 Carya illinoinensis HOM05D006680 ORTHO05D008206 2.0e-41 172.6 127 73.2
Sabra10G0008200 Salix brachista HOM05D006680 ORTHO05D008206 3.4e-41 171.8 127 74.8
CAN.G129.31 Capsicum annuum HOM05D006680 ORTHO05D008206 4.5e-41 171.4 112 82.1
Atru.chr4.2870 Acer truncatum HOM05D006680 ORTHO05D008206 7.6e-41 170.6 115 79.1
Ca_21488_v3 Cicer arietinum L. HOM05D006680 ORTHO05D008206 9.9e-41 170.2 118 79.7
ECA240G4018 Erigeron canadensis HOM05D006680 ORTHO05D008206 9.9e-41 170.2 127 69.3
Dinv29759 Davidia involucrata HOM05D006680 ORTHO05D008206 1.3e-40 169.9 112 79.5
Potri.010G013100 Populus trichocarpa HOM05D006680 ORTHO05D008206 1.3e-40 169.9 127 72.4
Gohir.A09G238300 Gossypium hirsutum HOM05D006680 ORTHO05D008206 1.7e-40 169.5 116 75.9
QL06p009590 Quercus lobata HOM05D006680 ORTHO05D008206 2.2e-40 169.1 126 70.6
Gorai.006G261900 Gossypium raimondii HOM05D006680 ORTHO05D008206 2.9e-40 168.7 116 75.0
Lalb_Chr13g0303561 Lupinus albus HOM05D006680 ORTHO05D008206 6.4e-40 167.5 110 79.1
Nitab4.5_0002761g0070 Nicotiana tabacum HOM05D006680 ORTHO05D008206 6.4e-40 167.5 112 79.5
Cc03_g01760 Coffea canephora HOM05D006680 ORTHO05D008206 8.4e-40 167.2 116 78.4
Glyma.07G246700 Glycine max HOM05D006680 ORTHO05D008206 1.4e-39 166.4 116 74.1
Peaxi162Scf00246g00103 Petunia axillaris HOM05D006680 ORTHO05D008206 1.4e-39 166.4 110 80.9
Gohir.D09G239200 Gossypium hirsutum HOM05D006680 ORTHO05D008206 1.9e-39 166.0 116 74.1
Sopen01g028370 Solanum pennellii HOM05D006680 ORTHO05D008206 2.4e-39 165.6 112 78.6
PGSC0003DMG400011317 Solanum tuberosum HOM05D006680 ORTHO05D008206 4.2e-39 164.9 112 77.7
CiPaw.02G082300 Carya illinoinensis HOM05D006680 ORTHO05D008206 5.4e-39 164.5 127 68.5
Migut.G00148 Erythranthe guttata HOM05D006680 ORTHO05D008206 7.1e-39 164.1 112 80.4
Nitab4.5_0003466g0010 Nicotiana tabacum HOM05D006680 ORTHO05D008206 7.1e-39 164.1 112 76.8
Lsat_1_v5_gn_6_95660 Lactuca sativa HOM05D006680 ORTHO05D008206 9.3e-39 163.7 127 68.5
Peaxi162Scf00646g00027 Petunia axillaris HOM05D006680 ORTHO05D008206 9.3e-39 163.7 112 79.5
Lj4g0016566 Lotus japonicus HOM05D006680 ORTHO05D008206 1.6e-38 162.9 96 88.5
Aqoxy2G02951 Aquilegia oxysepala HOM05D006680 ORTHO05D008206 2.1e-38 162.5 115 74.8
Lalb_Chr07g0177791 Lupinus albus HOM05D006680 ORTHO05D008206 3.5e-38 161.8 108 78.7
Oeu001107.1 Olea europaea HOM05D006680 ORTHO05D008206 1.8e-37 159.5 112 78.6
DCAR_027070 Daucus carota HOM05D006680 ORTHO05D008206 3.0e-37 158.7 108 76.9
Psat4g026840 Pisum sativum HOM05D006680 ORTHO05D008206 6.7e-37 157.5 94 84.0
Oeu063359.1 Olea europaea HOM05D006680 ORTHO05D008206 8.7e-37 157.1 112 78.6
DCAR_002469 Daucus carota HOM05D006680 ORTHO05D008206 1.9e-36 156.0 114 72.8
PGSC0003DMG400004705 Solanum tuberosum HOM05D006680 ORTHO05D008206 5.6e-36 154.5 110 72.7
TPR.G3164 Trifolium pratense HOM05D006680 ORTHO05D008206 7.4e-36 154.1 96 84.4
CAN.G484.39 Capsicum annuum HOM05D006680 ORTHO05D008206 1.6e-35 152.9 114 71.9
Hma1.2p1_1185F.1_g265000 Hydrangea macrophylla HOM05D006680 ORTHO05D008206 1.6e-35 152.9 125 67.2
TAR370G0002 Trochodendron aralioides HOM05D006680 ORTHO05D008206 1.6e-35 152.9 114 71.9
CSS0014864 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 1.1e-34 150.2 128 67.2
Solyc12g099500.2 Solanum lycopersicum HOM05D006680 ORTHO05D008206 1.1e-34 150.2 108 72.2
Sopen12g034170 Solanum pennellii HOM05D006680 ORTHO05D008206 1.1e-34 150.2 108 72.2
MSTRG.3906 Avicennia marina HOM05D006680 ORTHO05D008206 3.1e-34 148.7 112 71.4
CSS0010580 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 3.1e-34 148.7 128 67.2
Ah.08g214570 Amaranthus hybridus HOM05D006680 ORTHO05D008206 1.5e-33 146.4 113 72.6
CANSAT78G1139 Cannabis sativa HOM05D006680 ORTHO05D008206 2.0e-33 146.0 96 77.1
SGA_v2.0_scaffold67G22622 Striga asiatica HOM05D006680 ORTHO05D008206 2.0e-33 146.0 112 69.6
Nn4g25792 Nelumbo nucifera HOM05D006680 ORTHO05D008206 2.6e-33 145.6 129 60.5
Sed0015603 Sechium edule HOM05D006680 ORTHO05D008206 2.6e-33 145.6 127 60.6
Sc19g0005290 Simmondsia chinensis HOM05D006680 ORTHO05D008206 4.5e-33 144.8 117 70.1
Sc19g0005370 Simmondsia chinensis HOM05D006680 ORTHO05D008206 4.5e-33 144.8 117 70.1
Phvul.003G097003 Phaseolus vulgaris HOM05D006680 ORTHO05D008206 2.9e-32 142.1 96 78.1
Nn3g21479 Nelumbo nucifera HOM05D006680 ORTHO05D008206 4.9e-32 141.4 114 66.7
AUR62040379 Chenopodium quinoa HOM05D006680 ORTHO05D008206 8.4e-32 140.6 113 68.1
MBI19_g25353_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 1.9e-31 139.4 116 62.9
PSO832G1781 Papaver somniferum HOM05D006680 ORTHO05D008206 1.9e-31 139.4 120 62.5
HanXRQChr13g0419971 Helianthus annuus HOM05D006680 ORTHO05D008206 2.4e-31 139.0 110 65.5
PSO210G6323 Papaver somniferum HOM05D006680 ORTHO05D008206 3.2e-31 138.7 120 64.2
PGR004G0310 Punica granatum HOM05D006680 ORTHO05D008206 4.2e-31 138.3 128 62.5
DCAR_030521 Daucus carota HOM05D006680 ORTHO05D008206 2.7e-30 135.6 122 66.4
Sabra10G0008300 Salix brachista HOM05D006680 ORTHO05D008206 3.0e-29 132.1 113 68.1
PSO170G5007 Papaver somniferum HOM05D006680 ORTHO05D008206 5.1e-29 131.3 99 71.7
PSO017G4993 Papaver somniferum HOM05D006680 ORTHO05D008206 1.1e-28 130.2 99 70.7
MBI18_g06870_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 4.3e-28 128.3 116 61.2
PGR031G3343 Punica granatum HOM05D006680 ORTHO05D008206 7.4e-28 127.5 120 55.0
Os03g0343800 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 1.3e-27 126.7 114 61.4
Zm00001eb124100 Zea mays HOM05D006680 ORTHO05D008206 1.1e-26 123.6 114 59.6
MD16G1168200 Malus domestica HOM05D006680 ORTHO05D008206 1.4e-26 123.2 116 63.8
HanXRQChr03g0089341 Helianthus annuus HOM05D006680 ORTHO05D008206 5.3e-26 121.3 115 58.3
Thecc.09G272700 Theobroma cacao HOM05D006680 ORTHO05D008206 5.8e-25 117.9 82 75.6
Rhsim04G0223700 Rhododendron simsii HOM05D006680 ORTHO05D008206 7.6e-25 117.5 92 67.4
Rhsim09G0007300 Rhododendron simsii HOM05D006680 ORTHO05D008206 7.6e-25 117.5 92 67.4
HPP92_000110 Vanilla planifolia HOM05D006680 ORTHO05D008206 6.5e-24 114.4 118 53.4
Thecc.05G268700 Theobroma cacao HOM05D006680 ORTHO05D008206 1.4e-23 113.2 89 70.8
Zm00001eb016470 Zea mays HOM05D006680 ORTHO05D008206 2.5e-23 112.5 122 54.1
Zm00001eb394930 Zea mays HOM05D006680 ORTHO05D008206 6.7e-21 104.4 105 58.1
ATR0796G044 Amborella trichopoda HOM05D006680 ORTHO05D008206 1.5e-20 103.2 112 53.6
unitig_32.g11869 Utricularia gibba HOM05D006680 ORTHO05D008206 1.5e-20 103.2 114 52.6
Eucgr.H03932 Eucalyptus grandis HOM05D006680 ORTHO05D008206 1.9e-20 102.8 119 49.6
TAR633G0386 Trochodendron aralioides HOM05D006680 ORTHO05D008206 2.2e-16 89.4 127 45.7
Os07g0673801 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 9.4e-15 84.0 95 50.5
SalBow5G0837 Salvia bowleyana HOM05D006680 ORTHO05D008206 9.1e-10 67.4 113 38.1
MELO3C006671.2 Cucumis melo HOM05D006680 ORTHO05D008206 1.7e-08 63.2 59 59.3
SalBow3G3394 Salvia bowleyana HOM05D003064 ORTHO05D001733 1.6e-06 56.6 64 39.1
BcaC02g11300 Brassica carinata HOM05D003064 ORTHO05D001733 2.1e-06 56.2 100 36.0
C04p17820 Brassica napus HOM05D003064 ORTHO05D001733 2.1e-06 56.2 100 36.0
BolC4t23330H Brassica oleracea HOM05D003064 ORTHO05D001733 2.1e-06 56.2 100 36.0
Ca_03208_v3 Cicer arietinum L. HOM05D003064 ORTHO05D001733 3.6e-06 55.5 92 37.0
Medtr2g062220 Medicago truncatula HOM05D003064 ORTHO05D001733 6.1e-06 54.7 92 37.0


User provided reference genes

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